PMC Links for GEO Profiles (Select 42577055) - PMC

Select item 109802631.

Cryo-EM structures of the human NaS1 and NaDC1 transporters revealed the elevator transport and allosteric regulation mechanism

Ximin Chi, Yiming Chen, Yaning Li, Lu Dai, Yuanyuan Zhang, Yaping Shen, Yun Chen, Tianhao Shi, Haonan Yang, Zilong Wang, Renhong Yan

Sci Adv. 2024 Mar 29; 10(13): eadl3685. Published online 2024 Mar 29. doi: 10.1126/sciadv.adl3685

PMCID:: PMC10980263

Abstract Article PDF–3.5M

Select item 81650302.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 71699833.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 55316114.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 53743115.

Expression of sodium-dependent dicarboxylate transporter 1 (NaDC1/SLC13A2) in normal and neoplastic human kidney

Hyun-Wook Lee, Mary E. Handlogten, Gunars Osis, William L. Clapp, Dara N. Wakefield, Jill W. Verlander, I. David Weiner

Am J Physiol Renal Physiol. 2017 Mar 1; 312(3): F427–F435. Published online 2016 Dec 7. doi: 10.1152/ajprenal.00559.2016

PMCID:: PMC5374311

Abstract Article

Select item 47817556.

Structure based identification of inhibitors for the SLC13 family of Na⁺/dicarboxylate cotransporters

Claire Colas, Ana M. Pajor, Avner Schlessinger

Biochemistry. Author manuscript; available in PMC 2016 Mar 7.

Published in final edited form as: Biochemistry. 2015 Aug 11; 54(31): 4900–4908. Published online 2015 Jul 30. doi: 10.1021/acs.biochem.5b00388

PMCID:: PMC4781755

Abstract Article PDF–1.0M

Select item 31780597.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 30641808.

Synthesis, Maturation, and Trafficking of Human Na⁺-Dicarboxylate Cotransporter NaDC1 Requires the Chaperone Activity of Cyclophilin B

Marc J. Bergeron, Marc Bürzle, Gergely Kovacs, Alexandre Simonin, Matthias A. Hediger

J Biol Chem. 2011 Apr 1; 286(13): 11242–11253. Published online 2011 Jan 21. doi: 10.1074/jbc.M110.171728

PMCID:: PMC3064180

Abstract Article PDF–3.5M

Select item 29572499.

Single nucleotide polymorphisms in the human Na⁺-dicarboxylate cotransporter affect transport activity and protein expression

Ana M. Pajor, Nina N. Sun

Am J Physiol Renal Physiol. 2010 Oct; 299(4): F704–F711. Published online 2010 Jul 7. doi: 10.1152/ajprenal.00213.2010

PMCID:: PMC2957249

Abstract Article

Select item 263705010.

Large-Scale Proteomics and Phosphoproteomics of Urinary Exosomes

Patricia A. Gonzales, Trairak Pisitkun, Jason D. Hoffert, Dmitry Tchapyjnikov, Robert A. Star, Robert Kleta, Nam Sun Wang, Mark A. Knepper

J Am Soc Nephrol. 2009 Feb; 20(2): 363–379. doi: 10.1681/ASN.2008040406

PMCID:: PMC2637050

Abstract Article

Select item 257018511.

Threonine-509 is a determinant of apparent affinity for both substrate and cations in the human Na⁺/dicarboxylate cotransporter

Jittima Weerachayaphorn, Ana M. Pajor

Biochemistry. Author manuscript; available in PMC 2009 Jan 22.

Published in final edited form as: Biochemistry. 2008 Jan 22; 47(3): 1087–1093. Published online 2007 Dec 28. doi: 10.1021/bi701417h

PMCID:: PMC2570185

Abstract Article PDF–485K

Select item 186626812.

Molecular properties of the SLC13 family of dicarboxylate and sulfate transporters

Ana M. Pajor

Pflugers Arch. Author manuscript; available in PMC 2007 May 10.

Published in final edited form as: Pflugers Arch. 2006 Feb; 451(5): 597–605. Published online 2005 Oct 7. doi: 10.1007/s00424-005-1487-2

PMCID:: PMC1866268

Abstract Article PDF–335K

Select item 135612913.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406