PMC Links for GEO Profiles (Select 43766191) - PMC

Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 92098112.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86827943.

VID22 counteracts G-quadruplex-induced genome instability

Elena Galati, Maria C Bosio, Daniele Novarina, Matteo Chiara, Giulia M Bernini, Alessandro M Mozzarelli, Maria L García-Rubio, Belén Gómez-González, Andrés Aguilera, Thomas Carzaniga, Marco Todisco, Tommaso Bellini, Giulia M Nava, Gianmaria Frigè, Sarah Sertic, David S Horner, Anastasia Baryshnikova, Caterina Manzari, Anna M D’Erchia, Graziano Pesole, Grant W Brown, Marco Muzi-Falconi, Federico Lazzaro

Nucleic Acids Res. 2021 Dec 16; 49(22): 12785–12804. Published online 2021 Dec 6. doi: 10.1093/nar/gkab1156

PMCID:: PMC8682794

Abstract Article PDF–8.0M

Select item 77187514.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 56618855.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56002546.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 47734017.

Structures of the DfsB Protein Family Suggest a Cationic, Helical Sibling Lethal Factor Peptide

Jonathan D. Taylor, Gabrielle Taylor, Stephen A. Hare, Steve J. Matthews

J Mol Biol. 2016 Feb 13; 428(3): 554–560. doi: 10.1016/j.jmb.2016.01.013

PMCID:: PMC4773401

Abstract Article PDF–1.0M

Select item 36375968.

A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae

Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis

BMC Genomics. 2013; 14: 251. Published online 2013 Apr 15. doi: 10.1186/1471-2164-14-251

PMCID:: PMC3637596

Abstract Article PDF–2.0M

Select item 35546109.

Histone H3K56 Acetylation, Rad52, and Non-DNA Repair Factors Control Double-Strand Break Repair Choice with the Sister Chromatid

Sandra Muñoz-Galván, Sonia Jimeno, Rodney Rothstein, Andrés Aguilera

PLoS Genet. 2013 Jan; 9(1): e1003237. Published online 2013 Jan 24. doi: 10.1371/journal.pgen.1003237

PMCID:: PMC3554610

Abstract Article PDF–2.5M

Select item 240923410.

Association of yeast Upf1p with direct substrates of the NMD pathway

Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson

Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105

PMCID:: PMC2409234

Abstract Article PDF–864K

Select item 213494211.

Genome-Wide Analysis of Rad52 Foci Reveals Diverse Mechanisms Impacting Recombination

David Alvaro, Michael Lisby, Rodney Rothstein

PLoS Genet. 2007 Dec; 3(12): e228. Prepublished online 2007 Nov 6. Published online 2007 Dec 14. doi: 10.1371/journal.pgen.0030228

PMCID:: PMC2134942

Abstract Article PDF–332K

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