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Items: 15

1.
A disease associated mutant reveals how Ltv1 orchestrates RP assembly and rRNA folding of the small ribosomal subunit head
Ebba K. Blomqvist, Haina Huang, Katrin Karbstein
PLoS Genet. 2023 Nov; 19(11): e1010862. Published online 2023 Nov 1. doi: 10.1371/journal.pgen.1010862
PMCID:
PMC10695388
AbstractArticlePDF–10M
2.
Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation
Priya Bhutada, Sébastien Favre, Mariam Jaafar, Jutta Hafner, Laura Liesinger, Stefan Unterweger, Karin Bischof, Barbara Darnhofer, Devanarayanan Siva Sankar, Gerald Rechberger, Raghida Abou Merhi, Simon Lebaron, Ruth Birner-Gruenberger, Dieter Kressler, Anthony K Henras, Brigitte Pertschy
Nucleic Acids Res. 2022 Sep 23; 50(17): 10053–10077. Published online 2022 Aug 26. doi: 10.1093/nar/gkac724
PMCID:
PMC9508819
AbstractArticlePDF–16M
3.
Ribosome biogenesis factor Tsr3 is the aminocarboxypropyl transferase responsible for 18S rRNA hypermodification in yeast and humans
Britta Meyer, Jan Philip Wurm, Sunny Sharma, Carina Immer, Denys Pogoryelov, Peter Kötter, Denis L. J. Lafontaine, Jens Wöhnert, Karl-Dieter Entian
Nucleic Acids Res. 2016 May 19; 44(9): 4304–4316. Published online 2016 Apr 15. doi: 10.1093/nar/gkw244
PMCID:
PMC4872110
AbstractArticlePDF–12M
4.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M
5.
Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution
Ralph D. Hector, Elena Burlacu, Stuart Aitken, Thierry Le Bihan, Maarten Tuijtel, Alina Zaplatina, Atlanta G. Cook, Sander Granneman
Nucleic Acids Res. 2014 Oct 29; 42(19): 12138–12154. Published online 2014 Sep 8. doi: 10.1093/nar/gku815
PMCID:
PMC4231735
AbstractArticlePDF–7.0M
6.
Transcriptome-wide mapping reveals widespread dynamic regulated pseudouridylation of ncRNA and mRNA
Schraga Schwartz, Douglas A. Bernstein, Maxwell R. Mumbach, Marko Jovanovic, Rebecca H. Herbst, Brian X. León-Ricardo, Jesse M. Engreitz, Mitchell Guttman, Rahul Satija, Eric S. Lander, Gerald Fink, Aviv Regev
Cell. Author manuscript; available in PMC 2015 Sep 25.
Published in final edited form as: Cell. 2014 Sep 25; 159(1): 148–162. Published online 2014 Sep 11. doi: 10.1016/j.cell.2014.08.028
PMCID:
PMC4180118
AbstractArticlePDF–1.6M
7.
Identification of novel proteins associated with yeast snR30 small nucleolar RNA
Vincent Lemay, Ahmed Hossain, Yvonne N. Osheim, Ann L. Beyer, François Dragon
Nucleic Acids Res. 2011 Dec; 39(22): 9659–9670. Published online 2011 Sep 5. doi: 10.1093/nar/gkr659
PMCID:
PMC3239182
AbstractArticlePDF–13M
8.
Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1
Tyler J. Creamer, Miranda M. Darby, Nuttara Jamonnak, Paul Schaughency, Haiping Hao, Sarah J. Wheelan, Jeffry L. Corden
PLoS Genet. 2011 Oct; 7(10): e1002329. Published online 2011 Oct 20. doi: 10.1371/journal.pgen.1002329
PMCID:
PMC3197677
AbstractArticlePDF–1.3M
9.
The Bowen–Conradi syndrome protein Nep1 (Emg1) has a dual role in eukaryotic ribosome biogenesis, as an essential assembly factor and in the methylation of Ψ1191 in yeast 18S rRNA
Britta Meyer, Jan Philip Wurm, Peter Kötter, Matthias S. Leisegang, Valeska Schilling, Markus Buchhaupt, Martin Held, Ute Bahr, Michael Karas, Alexander Heckel, Markus T. Bohnsack, Jens Wöhnert, Karl-Dieter Entian
Nucleic Acids Res. 2011 Mar; 39(4): 1526–1537. Published online 2010 Oct 23. doi: 10.1093/nar/gkq931
PMCID:
PMC3045603
AbstractArticlePDF–2.1M
10.
Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing
Xue-hai Liang, Qing Liu, Maurille J. Fournier
RNA. 2009 Sep; 15(9): 1716–1728. doi: 10.1261/rna.1724409
PMCID:
PMC2743053
AbstractArticlePDF–1.1M
11.
New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA
Dorota Piekna-Przybylska, Wayne A. Decatur, Maurille J. Fournier
RNA. 2007 Mar; 13(3): 305–312. doi: 10.1261/rna.373107
PMCID:
PMC1800513
AbstractArticlePDF–745K
12.
The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae
CLAIRE TORCHET, GWENAËL BADIS, FRÉDÉRIC DEVAUX, GINNY COSTANZO, MICHEL WERNER, ALAIN JACQUIER
RNA. 2005 Jun; 11(6): 928–938. doi: 10.1261/rna.2100905
PMCID:
PMC1370777
AbstractArticlePDF–592K
13.
Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome
Peter Schattner, Wayne A. Decatur, Carrie A. Davis, Manuel Ares, Jr, Maurille J. Fournier, Todd M. Lowe
Nucleic Acids Res. 2004; 32(14): 4281–4296. Published online 2004 Aug 11. doi: 10.1093/nar/gkh768
PMCID:
PMC514388
AbstractArticlePDF–709K
14.
Characterization of three new snRNAs from Saccharomyces cerevisiae: snR34, snR35 and snR36.
D A Samarsky, A G Balakin, M J Fournier
Nucleic Acids Res. 1995 Jul 11; 23(13): 2548–2554. doi: 10.1093/nar/23.13.2548
PMCID:
PMC307065
SummaryPage BrowsePDF–1.8M
15.
A comprehensive database for the small nucleolar RNAs from Saccharomyces cerevisiae.
D A Samarsky, M J Fournier
Nucleic Acids Res. 1999 Jan 1; 27(1): 161–164. doi: 10.1093/nar/27.1.161
PMCID:
PMC148121
SummaryPDF–517K

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