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Items: 1 to 20 of 45

1.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
2.
HIV-1 Gag-Virus-Like Particles Induce Natural Killer Cell Immune Responses via Activation and Maturation of Dendritic Cells
Myint Oo Chang, Tomoyuki Suzuki, Hitoshi Suzuki, Hiroshi Takaku
J Innate Immun. 2012 Feb; 4(2): 187–200. Published online 2011 Jul 22. doi: 10.1159/000329226
PMCID:
PMC6741469
AbstractArticlePDF–990K
3.
LuTHy: a double‐readout bioluminescence‐based two‐hybrid technology for quantitative mapping of protein–protein interactions in mammalian cells
Philipp Trepte, Sabrina Kruse, Simona Kostova, Sheila Hoffmann, Alexander Buntru, Anne Tempelmeier, Christopher Secker, Lisa Diez, Aline Schulz, Konrad Klockmeier, Martina Zenkner, Sabrina Golusik, Kirstin Rau, Sigrid Schnoegl, Craig C Garner, Erich E Wanker
Mol Syst Biol. 2018 Jul; 14(7): e8071. Published online 2018 Jul 11. doi: 10.15252/msb.20178071
PMCID:
PMC6039870
AbstractArticlePDF–2.1M
4.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
5.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
6.
Evaluating the role of HLA-DM in MHC II-peptide association reactions
Liusong Yin, Zachary Maben, Aniuska Becerra, Lawrence J. Stern
J Immunol. Author manuscript; available in PMC 2016 Jul 15.
Published in final edited form as: J Immunol. 2015 Jul 15; 195(2): 706–716. Published online 2015 Jun 10. doi: 10.4049/jimmunol.1403190
PMCID:
PMC4490944
AbstractArticlePDF–1.3M
7.
SNP screening of central MHC identified HLA-DMB as a candidate susceptibility gene for HIV-related Kaposi’s sarcoma
Brahim Aissani, Amelia K. Boehme, Howard W. Wiener, Sadeep Shrestha, Lisa P. Jacobson, Richard A. Kaslow
Genes Immun. Author manuscript; available in PMC 2015 Mar 1.
Published in final edited form as: Genes Immun. 2014 Sep; 15(6): 424–429. Published online 2014 Jul 10. doi: 10.1038/gene.2014.42
PMCID:
PMC4174341
AbstractArticlePDF–922K
8.
The activity of Nef on HIV-1 infectivity
Stéphane Basmaciogullari, Massimo Pizzato
Front Microbiol. 2014; 5: 232. Published online 2014 May 20. doi: 10.3389/fmicb.2014.00232
PMCID:
PMC4033043
AbstractArticlePDF–1.2M
9.
HLA-DO acts as a substrate mimic to inhibit HLA-DM by a competitive mechanism
Abigail I Guce, Sarah E Mortimer, Taejin Yoon, Corrie A Painter, Wei Jiang, Elizabeth D Mellins, Lawrence J Stern
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 Jul 1.
Published in final edited form as: Nat Struct Mol Biol. 2013 Jan; 20(1): 90–98. Published online 2012 Dec 9. doi: 10.1038/nsmb.2460
PMCID:
PMC3537886
AbstractArticlePDF–2.2M
10.
Crystal Structure of the HLA-DM - HLA-DR1 Complex Defines Mechanisms for Rapid Peptide Selection
Wouter Pos, Dhruv K. Sethi, Melissa J. Call, Monika-Sarah E. D. Schulze, Anne-Kathrin Anders, Jason Pyrdol, Kai W. Wucherpfennig
Cell. Author manuscript; available in PMC 2013 Dec 21.
Published in final edited form as: Cell. 2012 Dec 21; 151(7): 1557–1568. doi: 10.1016/j.cell.2012.11.025
PMCID:
PMC3530167
AbstractArticlePDF–6.5M
11.
Strategy for Identifying Dendritic Cell-Processed CD4+ T Cell Epitopes from the HIV Gag p24 Protein
Leonia Bozzacco, Haiqiang Yu, Jörn Dengjel, Christine Trumpfheller, Henry A. Zebroski, III, Nawei Zhang, Victoria Küttner, Beatrix M. Ueberheide, Haiteng Deng, Brian T. Chait, Ralph M. Steinman, Svetlana Mojsov, David Fenyö
PLoS One. 2012; 7(7): e41897. Published online 2012 Jul 30. doi: 10.1371/journal.pone.0041897
PMCID:
PMC3408443
AbstractArticlePDF–1.4M
12.
Mapping the HLA-DO/HLA-DM complex by FRET and mutagenesis
Taejin Yoon, Henriette Macmillan, Sarah E. Mortimer, Wei Jiang, Cornelia H. Rinderknecht, Lawrence J. Stern, Elizabeth D. Mellins
Proc Natl Acad Sci U S A. 2012 Jul 10; 109(28): 11276–11281. Published online 2012 Jun 25. doi: 10.1073/pnas.1113966109
PMCID:
PMC3396517
AbstractArticlePDF–1.2M
13.
Ubiquitination of Human Leukocyte Antigen (HLA)-DM by Different Membrane-associated RING-CH (MARCH) Protein Family E3 Ligases Targets Different Endocytic Pathways
Martin Jahnke, John Trowsdale, Adrian P. Kelly
J Biol Chem. 2012 Mar 2; 287(10): 7256–7264. Published online 2012 Jan 13. doi: 10.1074/jbc.M111.305961
PMCID:
PMC3293585
AbstractArticlePDF–1.5M
14.
One Protein to Rule them All: Modulation of Cell Surface Receptors and Molecules by HIV Nef
Alessia Landi, Veronica Iannucci, Anouk Van Nuffel, Pieter Meuwissen, Bruno Verhasselt
Curr HIV Res. 2011 Oct; 9(7): 496–504. Published online 2011 Oct. doi: 10.2174/157016211798842116
PMCID:
PMC3290772
AbstractArticlePDF–247K
15.
Toward an understanding of the protein interaction network of the human liver
Jian Wang, Keke Huo, Lixin Ma, Liujun Tang, Dong Li, Xiaobi Huang, Yanzhi Yuan, Chunhua Li, Wei Wang, Wei Guan, Hui Chen, Chaozhi Jin, Junchen Wei, Wanqiao Zhang, Yongsheng Yang, Qiongming Liu, Ying Zhou, Cuili Zhang, Zhihao Wu, Wangxiang Xu, Ying Zhang, Tao Liu, Donghui Yu, Yaping Zhang, Liang Chen, Dewu Zhu, Xing Zhong, Lixin Kang, Xiang Gan, Xiaolan Yu, Qi Ma, Jing Yan, Li Zhou, Zhongyang Liu, Yunping Zhu, Tao Zhou, Fuchu He, Xiaoming Yang
Mol Syst Biol. 2011; 7: 536. Published online 2011 Oct 11. doi: 10.1038/msb.2011.67
Correction in:
Mol Syst Biol. 2017 Dec; 13(12): 965.
PMCID:
PMC3261708
AbstractArticlePDF–2.0M
16.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
17.
Misdirection of membrane trafficking by HIV-1 Vpu and Nef: Keys to viral virulence and persistence
Andrey Tokarev, John Guatelli
Cell Logist. 2011 May-Jun; 1(3): 90–102. Published online May-Jun 2011. doi: 10.4161/cl.1.3.16708
PMCID:
PMC3173656
AbstractArticlePDF–619K
18.
HLA-DM Captures Partially Empty HLA-DR Molecules for Catalyzed Peptide Removal
Anne-Kathrin Anders, Melissa J. Call, Monika-Sarah E. D. Schulze, Kevin D. Fowler, David A. Schubert, Nilufer P. Seth, Eric J. Sundberg, Kai W. Wucherpfennig
Nat Immunol. Author manuscript; available in PMC 2011 Jul 1.
Published in final edited form as: Nat Immunol. 2011 Jan; 12(1): 54–61. Published online 2010 Dec 5. doi: 10.1038/ni.1967
PMCID:
PMC3018327
AbstractArticlePDF–1.7M
19.
INCREASED HLA-DMB EXPRESSION IN THE TUMOR EPITHELIUM IS ASSOCIATED WITH INCREASED CYTOTOXIC T LYMPHOCYTE INFILTRATION AND IMPROVED PROGNOSIS IN ADVANCED SEROUS OVARIAN CANCER
Michael J. Callahan, Zoltan Nagymanyoki, Tomas Bonome, Michael E. Johnson, Babak Litkouhi, Elizabeth H. Sullivan, Michelle S. Hirsch, Ursula A. Matulonis, Joyce Liu, Michael J. Birrer, Ross S. Berkowitz, Samuel C. Mok
Clin Cancer Res. Author manuscript; available in PMC 2010 Dec 9.
Published in final edited form as: Clin Cancer Res. 2008 Dec 1; 14(23): 7667–7673. doi: 10.1158/1078-0432.CCR-08-0479
PMCID:
PMC3000165
AbstractArticlePDF–3.5M
20.
DM influences the abundance of major histocompatibility complex class II alleles with low affinity for class II-associated invariant chain peptides via multiple mechanisms
Cornelia H Rinderknecht, Sujin Roh, Achal Pashine, Michael P Belmares, Namrata S Patil, Ning Lu, Phi Truong, Tieying Hou, Claudia Macaubas, Taejin Yoon, Nan Wang, Robert Busch, Elizabeth D Mellins
Immunology. 2010 Sep; 131(1): 18–32. doi: 10.1111/j.1365-2567.2010.03282.x
PMCID:
PMC2966754
AbstractArticlePDF–516K

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