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Items: 18

1.
A dual-activity topoisomerase complex regulates mRNA translation and turnover
Shuaikun Su, Yutong Xue, Alexei Sharov, Yongqing Zhang, Seung Kyu Lee, Jennifer L Martindale, Wen Li, Wai Lim Ku, Keji Zhao, Supriyo De, Weiping Shen, Payel Sen, Myriam Gorospe, Dongyi Xu, Weidong Wang
Nucleic Acids Res. 2022 Jul 8; 50(12): 7013–7033. Published online 2022 Jun 24. doi: 10.1093/nar/gkac538
PMCID:
PMC9262614
AbstractArticlePDF–3.6M
2.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
3.
Expanding the clinical spectrum of biallelic ZNF335 variants
Katrien Stouffs, Andrew B. Stergachis, Tim Vanderhasselt, Alice Dica, Sandra Janssens, Laura Vandervore, Alexander Gheldof, Olaf Bodamer, Kathelijn Keymolen, Sara Seneca, Inge Liebaers, Divya Jayaraman, Haley E. Hill, Jennifer N. Partlow, Christopher A. Walsh, Anna C. Jansen
Clin Genet. Author manuscript; available in PMC 2019 Aug 1.
Published in final edited form as: Clin Genet. 2018 Aug; 94(2): 246–251. Published online 2018 May 3. doi: 10.1111/cge.13260
PMCID:
PMC6361164
AbstractArticlePDF–1.1M
4.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
5.
Recruitment of the Mammalian Histone-modifying EMSY Complex to Target Genes Is Regulated by ZNF131
Radhika A. Varier, Enrique Carrillo de Santa Pau, Petra van der Groep, Rik G. H. Lindeboom, Filomena Matarese, Anneloes Mensinga, Arne H. Smits, Raghu Ram Edupuganti, Marijke P. Baltissen, Pascal W. T. C. Jansen, Natalie ter Hoeve, Danny R. van Weely, Ina Poser, Paul J. van Diest, Hendrik G. Stunnenberg, Michiel Vermeulen
J Biol Chem. 2016 Apr 1; 291(14): 7313–7324. Published online 2016 Feb 3. doi: 10.1074/jbc.M115.701227
PMCID:
PMC4817164
AbstractArticlePDF–3.5M
6.
Common polygenic variation in coeliac disease and confirmation of ZNF335 and NIFA as disease susceptibility loci
Ciara Coleman, Emma M Quinn, Anthony W Ryan, Judith Conroy, Valerie Trimble, Nasir Mahmud, Nicholas Kennedy, Aiden P Corvin, Derek W Morris, Gary Donohoe, Colm O'Morain, Padraic MacMathuna, Valerie Byrnes, Clifford Kiat, Gosia Trynka, Cisca Wijmenga, Dermot Kelleher, Sean Ennis, Richard JL Anney, Ross McManus
Eur J Hum Genet. 2016 Feb; 24(2): 291–297. Published online 2015 Apr 29. doi: 10.1038/ejhg.2015.87
PMCID:
PMC4717209
AbstractArticlePDF–997K
7.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
8.
Characterization of the Cardiac Overexpression of HSPB2 Reveals Mitochondrial and Myogenic Roles Supported by a Cardiac HspB2 Interactome
Julianne H. Grose, Kelsey Langston, Xiaohui Wang, Shayne Squires, Soumyajit Banerjee Mustafi, Whitney Hayes, Jonathan Neubert, Susan K. Fischer, Matthew Fasano, Gina Moore Saunders, Qiang Dai, Elisabeth Christians, E. Douglas Lewandowski, Peipei Ping, Ivor J. Benjamin
PLoS One. 2015; 10(10): e0133994. Published online 2015 Oct 14. doi: 10.1371/journal.pone.0133994
PMCID:
PMC4605610
AbstractArticlePDF–6.8M
9.
Microcephaly gene links Trithorax and REST/NRSF to control neural stem cell proliferation and differentiation
Yawei J. Yang, Andrew E. Baltus, Rebecca S. Mathew, Elisabeth A. Murphy, Gilad D. Evrony, Dilenny M. Gonzalez, Estee P. Wang, Christine A. Marshall-Walker, Brenda J. Barry, Jernej Murn, Antonis Tatarakis, Muktar A. Mahajan, Herbert H. Samuels, Yang Shi, Jeffrey A. Golden, Muhammad Mahajnah, Ruthie Shenhav, Christopher A. Walsh
Cell. Author manuscript; available in PMC 2013 May 21.
Published in final edited form as: Cell. 2012 Nov 21; 151(5): 1097–1112. doi: 10.1016/j.cell.2012.10.043
PMCID:
PMC3567437
AbstractArticlePDF–7.5M
10.
A Systematic Screen for CDK4/6 Substrates Links FOXM1 Phosphorylation to Senescence Suppression in Cancer Cells
Lars Anders, Nan Ke, Per Hydbring, Yoon J. Choi, Hans R. Widlund, Joel M. Chick, Huili Zhai, Marc Vidal, Stephen P. Gygi, Pascal Braun, Piotr Sicinski
Cancer Cell. Author manuscript; available in PMC 2012 Nov 15.
Published in final edited form as: Cancer Cell. 2011 Nov 15; 20(5): 620–634. doi: 10.1016/j.ccr.2011.10.001
PMCID:
PMC3237683
AbstractArticlePDF–3.3M
11.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
12.
Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score
Jed E Rose, Frédérique M Behm, Tomas Drgon, Catherine Johnson, George R Uhl
Mol Med. 2010 Jul-Aug; 16(7-8): 247–253. Published online 2010 Mar 17. doi: 10.2119/molmed.2009.00159
Correction in:
Mol Med. 2012; 18(1): 729.
PMCID:
PMC2896464
AbstractArticlePDF–2.4M
13.
Complementary Quantitative Proteomics Reveals that Transcription Factor AP-4 Mediates E-box-dependent Complex Formation for Transcriptional Repression of HDM2
Wei-Chi Ku, Sung-Kay Chiu, Yi-Ju Chen, Hsin-Hung Huang, Wen-Guey Wu, Yu-Ju Chen
Mol Cell Proteomics. 2009 Sep; 8(9): 2034–2050. Published online 2009 Jun 7. doi: 10.1074/mcp.M900013-MCP200
PMCID:
PMC2742435
AbstractArticlePDF–560K
14.
Identification and Characterization of a Novel Nuclear Protein Complex Involved in Nuclear Hormone Receptor-mediated Gene Regulation
Shivani Garapaty, Chong-Feng Xu, Patrick Trojer, Muktar A. Mahajan, Thomas A. Neubert, Herbert H. Samuels
J Biol Chem. 2009 Mar 20; 284(12): 7542–7552. doi: 10.1074/jbc.M805872200
PMCID:
PMC2658049
AbstractArticlePDF–531K
15.
Large-scale characterization of HeLa cell nuclear phosphoproteins
Sean A. Beausoleil, Mark Jedrychowski, Daniel Schwartz, Joshua E. Elias, Judit Villén, Jiaxu Li, Martin A. Cohn, Lewis C. Cantley, Steven P. Gygi
Proc Natl Acad Sci U S A. 2004 Aug 17; 101(33): 12130–12135. Published online 2004 Aug 9. doi: 10.1073/pnas.0404720101
PMCID:
PMC514446
AbstractArticlePDF–475K
16.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
17.
NRC-Interacting Factor 1 Is a Novel Cotransducer That Interacts with and Regulates the Activity of the Nuclear Hormone Receptor Coactivator NRC
Muktar A. Mahajan, Audrey Murray, Herbert H. Samuels
Mol Cell Biol. 2002 Oct; 22(19): 6883–6894. doi: 10.1128/MCB.22.19.6883-6894.2002
PMCID:
PMC134037
AbstractArticlePDF–305K
18.
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags
Emmanuel Dias Neto, Ricardo Garcia Correa, Sergio Verjovski-Almeida, Marcelo R. S. Briones, Maria Aparecida Nagai, Wilson da Silva, Jr., Marco Antonio Zago, Silvana Bordin, Fernando Ferreira Costa, Gustavo Henrique Goldman, Alex F. Carvalho, Adriana Matsukuma, Gilson S. Baia, David H. Simpson, Adriana Brunstein, Paulo S. L. de Oliveira, Philipp Bucher, C. Victor Jongeneel, Michael J. O'Hare, Fernando Soares, Ricardo R. Brentani, Luis F. L. Reis, Sandro J. de Souza, Andrew J. G. Simpson
Proc Natl Acad Sci U S A. 2000 Mar 28; 97(7): 3491–3496. doi: 10.1073/pnas.97.7.3491
PMCID:
PMC16267
AbstractArticlePDF–111K

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