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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 96309863.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 95071304.

The VINE complex is an endosomal VPS9-domain GEF and SNX-BAR coat

Shawn P Shortill, Mia S Frier, Ponthakorn Wongsangaroonsri, Michael Davey, Elizabeth Conibear

eLife. 2022; 11: e77035. Published online 2022 Aug 8. doi: 10.7554/eLife.77035

PMCID:: PMC9507130

Abstract Article PDF–6.1M

Select item 92860235.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 86940407.

Phospholipid flippases and Sfk1 are essential for the retention of ergosterol in the plasma membrane

Takuma Kishimoto, Tetsuo Mioka, Eriko Itoh, David E. Williams, Raymond J. Andersen, Kazuma Tanaka

Mol Biol Cell. 2021 Jul 15; 32(15): 1374–1392. doi: 10.1091/mbc.E20-11-0699

PMCID:: PMC8694040

Abstract Article PDF–4.3M

Select item 79393878.

Exofacial membrane composition and lipid metabolism regulates plasma membrane P4-ATPase substrate specificity

Bhawik Kumar Jain, Bartholomew P. Roland, Todd R. Graham

J Biol Chem. 2020 Dec 25; 295(52): 17997–18009. Published online 2021 Jan 13. doi: 10.1074/jbc.RA120.014794

PMCID:: PMC7939387

Abstract Article PDF–2.3M

Select item 77970789.

Pseudouridine-mediated translation control of mRNA by methionine aminoacyl tRNA synthetase

Ofri Levi, Yoav S Arava

Nucleic Acids Res. 2021 Jan 11; 49(1): 432–443. Published online 2020 Dec 10. doi: 10.1093/nar/gkaa1178

PMCID:: PMC7797078

Abstract Article PDF–3.3M

Select item 777333310.

Transport mechanism of P4 ATPase phosphatidylcholine flippases

Lin Bai, Qinglong You, Bhawik K Jain, H Diessel Duan, Amanda Kovach, Todd R Graham, Huilin Li

eLife. 2020; 9: e62163. Published online 2020 Dec 15. doi: 10.7554/eLife.62163

PMCID:: PMC7773333

Abstract Article PDF–6.6M

Select item 771875111.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 738517812.

An optogenetic system to control membrane phospholipid asymmetry through flippase activation in budding yeast

Tomomi Suzuki, Tetsuo Mioka, Kazuma Tanaka, Akira Nagatani

Sci Rep. 2020; 10: 12474. Published online 2020 Jul 27. doi: 10.1038/s41598-020-69459-0

PMCID:: PMC7385178

Abstract Article PDF–8.2M

Select item 649517513.

The PQ-loop protein Any1 segregates Drs2 and Neo1 functions required for viability and plasma membrane phospholipid asymmetry

Mehmet Takar, Yannan Huang, Todd R. Graham

J Lipid Res. 2019 May; 60(5): 1032–1042. Published online 2019 Mar 1. doi: 10.1194/jlr.M093526

PMCID:: PMC6495175

Abstract Article PDF–1.8M

Select item 636928514.

Yeast and human P4-ATPases transport glycosphingolipids using conserved structural motifs

Bartholomew P. Roland, Tomoki Naito, Jordan T. Best, Cayetana Arnaiz-Yépez, Hiroyuki Takatsu, Roger J. Yu, Hye-Won Shin, Todd R. Graham

J Biol Chem. 2019 Feb 8; 294(6): 1794–1806. Published online 2018 Dec 10. doi: 10.1074/jbc.RA118.005876

PMCID:: PMC6369285

Abstract Article PDF–2.4M

Select item 634107315.

The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system

Amit Shrestha, Steve Brunette, William Lloyd Stanford, Lynn Arthur Megeney

Cell Discov. 2019; 5: 6. Published online 2019 Jan 22. doi: 10.1038/s41421-018-0071-9

PMCID:: PMC6341073

Abstract Article PDF–1.7M

Select item 621328516.

Nonsense‐mediated mRNA decay involves two distinct Upf1‐bound complexes

Marine Dehecq, Laurence Decourty, Abdelkader Namane, Caroline Proux, Joanne Kanaan, Hervé Le Hir, Alain Jacquier, Cosmin Saveanu

EMBO J. 2018 Nov 2; 37(21): e99278. Published online 2018 Oct 1. doi: 10.15252/embj.201899278

PMCID:: PMC6213285

Abstract Article PDF–1.2M

Select item 607845317.

Target of rapamycin complex 2–dependent phosphorylation of the coat protein Pan1 by Akl1 controls endocytosis dynamics in Saccharomyces cerevisiae

Clélia Bourgoint, Delphine Rispal, Marina Berti, Ireos Filipuzzi, Stephen B. Helliwell, Manoël Prouteau, Robbie Loewith

J Biol Chem. 2018 Aug 3; 293(31): 12043–12053. Published online 2018 Jun 12. doi: 10.1074/jbc.RA117.001615

PMCID:: PMC6078453

Abstract Article PDF–3.9M

Select item 593507018.

Phospholipid flippases and Sfk1p, a novel regulator of phospholipid asymmetry, contribute to low permeability of the plasma membrane

Tetsuo Mioka, Konomi Fujimura-Kamada, Nahiro Mizugaki, Takuma Kishimoto, Takamitsu Sano, Hitoshi Nunome, David E. Williams, Raymond J. Andersen, Kazuma Tanaka

Mol Biol Cell. 2018 May 15; 29(10): 1203–1218. doi: 10.1091/mbc.E17-04-0217

PMCID:: PMC5935070

Abstract Article PDF–2.7M

Select item 576535919.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188520.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

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PMC Links for GEO Profiles (Select 6191157) (63)
PMC
GATA1 GATA binding protein 1 [Homo sapiens]
GATA1 GATA binding protein 1 [Homo sapiens]
Gene ID:2623

Gene
Gene Links for OMIM (Select 301083) (1)
Gene
RecName: Full=Dipeptidyl peptidase 1; AltName: Full=Cathepsin C; AltName: Full=C...
RecName: Full=Dipeptidyl peptidase 1; AltName: Full=Cathepsin C; AltName: Full=Cathepsin J; AltName: Full=Dipeptidyl peptidase I; Short=DPP-I; Short=DPPI; AltName: Full=Dipeptidyl transferase; Contains: RecName: Full=Dipeptidyl peptidase 1 exclusion domain chain; AltName: Full=Dipeptidyl peptidase I exclusion domain chain; Contains: RecName: Full=Dipeptidyl peptidase 1 heavy chain; AltName: Full=Dipeptidyl peptidase I heavy chain; Contains: RecName: Full=Dipeptidyl peptidase 1 light chain; AltName: Full=Dipeptidyl peptidase I light chain; Flags: Precursor
gi|3023454|sp|P97821.1|CATC_MOUSE

Protein
Zosterops consobrinorum isolate SUL2458 NADH dehydrogenase subunit 3 (ND3) gene,...
Zosterops consobrinorum isolate SUL2458 NADH dehydrogenase subunit 3 (ND3) gene, complete cds; mitochondrial
gi|1625642680|gb|MH492895.1|

Nucleotide

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