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Items: 1 to 20 of 26

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation
He Leng, Shaofeng Liu, Yang Lei, Yuantao Tang, Shijia Gu, Jiazhi Hu, She Chen, Jianxun Feng, Qing Li
Nucleic Acids Res. 2021 Jun 4; 49(10): 5502–5519. Published online 2021 May 8. doi: 10.1093/nar/gkab312
PMCID:
PMC8191775
AbstractArticlePDF–3.0M
4.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
5.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
6.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
7.
Mapping the Synthetic Dosage Lethality Network of CDK1/CDC28
Christine Zimmermann, Ignacio Garcia, Manja Omerzu, Pierre Chymkowitch, Beibei Zhang, Jorrit M. Enserink
G3 (Bethesda) 2017 Jun; 7(6): 1753–1766. Published online 2017 Apr 18. doi: 10.1534/g3.117.042317
Correction in:
G3 (Bethesda). 2019 Aug; 9(8): 2787.
PMCID:
PMC5473755
AbstractArticlePDF–2.7M
8.
Substrate binding on the APC/C occurs between the co-activator CDH1 and the processivity factor DOC1
Bettina A. Buschhorn, Georg Petzold, Marta Galova, Prakash Dube, Claudine Kraft, Franz Herzog, Holger Stark, Jan–Michael Peters
Nat Struct Mol Biol. Author manuscript; available in PMC 2015 Jan 21.
Published in final edited form as: Nat Struct Mol Biol. 2011 Jan; 18(1): 6–13. Published online 2010 Dec 26. doi: 10.1038/nsmb.1979
PMCID:
PMC4300845
AbstractArticlePDF–1.6M
9.
Multiple mechanisms determine the order of APC/C substrate degradation in mitosis
Dan Lu, Jennifer Y. Hsiao, Norman E. Davey, Vanessa A. Van Voorhis, Scott A. Foster, Chao Tang, David O. Morgan
J Cell Biol. 2014 Oct 13; 207(1): 23–39. doi: 10.1083/jcb.201402041
PMCID:
PMC4195823
AbstractArticlePDF–4.9M
10.
Genome-Wide Study of the Adaptation of Saccharomyces cerevisiae to the Early Stages of Wine Fermentation
Maite Novo, Ana Mangado, Manuel Quirós, Pilar Morales, Zoel Salvadó, Ramon Gonzalez
PLoS One. 2013; 8(9): e74086. Published online 2013 Sep 5. doi: 10.1371/journal.pone.0074086
PMCID:
PMC3764036
AbstractArticlePDF–496K
11.
APC15 mediates CDC20 auto-ubiquitylation by APC/CMCC and MCC disassembly
Kristina Uzunova, Billy T. Dye, Hannelore Schutz, Rene Ladurner, Georg Petzold, Yusuke Toyoda, Marc A. Jarvis, Nicholas G. Brown, Ina Poser, Maria Novatchkova, Karl Mechtler, Anthony A. Hyman, Holger Stark, Brenda A. Schulman, Jan-Michael Peters
Nat Struct Mol Biol. Author manuscript; available in PMC 2013 May 1.
Published in final edited form as: Nat Struct Mol Biol. 2012 Nov; 19(11): 1116–1123. Published online 2012 Sep 24. doi: 10.1038/nsmb.2412
PMCID:
PMC3498062
AbstractArticlePDF–3.2M
12.
The APC/C Subunit Mnd2/Apc15 Promotes Cdc20 Autoubiquitination and Spindle Assembly Checkpoint Inactivation
Scott A. Foster, David O. Morgan
Mol Cell. Author manuscript; available in PMC 2013 Sep 28.
Published in final edited form as: Mol Cell. 2012 Sep 28; 47(6): 921–932. Published online 2012 Aug 30. doi: 10.1016/j.molcel.2012.07.031
PMCID:
PMC3462283
AbstractArticlePDF–3.5M
13.
Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins
Tanja Scherrer, Christian Femmer, Ralph Schiess, Ruedi Aebersold, André P Gerber
Genome Biol. 2011; 12(1): R3. Published online 2011 Jan 13. doi: 10.1186/gb-2011-12-1-r3
PMCID:
PMC3091301
AbstractArticlePDF–1.3M
14.
Structures of APC/CCdh1 with substrates identify Cdh1 and Apc10 as the D-box co-receptor
Paula C.A. da Fonseca, Eric H. Kong, Ziguo Zhang, Anne Schreiber, Mark. A. Williams, Edward P. Morris, David Barford
Nature. Author manuscript; available in PMC 2011 Aug 1.
Published in final edited form as: Nature. 2011 Feb 10; 470(7333): 274–278. Published online 2010 Nov 24. doi: 10.1038/nature09625
PMCID:
PMC3037847
AbstractArticlePDF–1.7M
15.
Ama1p-activated anaphase-promoting complex regulates the destruction of Cdc20p during meiosis II
Grace S. Tan, Jennifer Magurno, Katrina F. Cooper
Mol Biol Cell. 2011 Feb 1; 22(3): 315–326. doi: 10.1091/mbc.E10-04-0360
PMCID:
PMC3031463
AbstractArticlePDF–6.0M
16.
Rec8 Phosphorylation by Casein Kinase 1 and Cdc7-Dbf4 Kinase Regulates Cohesin Cleavage by Separase during Meiosis
Vittorio L. Katis, Jesse J. Lipp, Richard Imre, Aliona Bogdanova, Elwy Okaz, Bianca Habermann, Karl Mechtler, Kim Nasmyth, Wolfgang Zachariae
Dev Cell. 2010 Mar 16; 18(3): 397–409. doi: 10.1016/j.devcel.2010.01.014
PMCID:
PMC2994640
AbstractArticle
17.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
18.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M
19.
The Ras/cAMP Pathway and the CDK-Like Kinase Ime2 Regulate the MAPK Smk1 and Spore Morphogenesis in Saccharomyces cerevisiae
Christine M. McDonald, Marisa Wagner, Maitreya J. Dunham, Marcus E. Shin, Noreen T. Ahmed, Edward Winter
Genetics. 2009 Feb; 181(2): 511–523. doi: 10.1534/genetics.108.098434
PMCID:
PMC2644944
AbstractArticlePDF–609K
20.
Identification of Yeast IQGAP (Iqg1p) as an Anaphase-Promoting-Complex Substrate and Its Role in Actomyosin-Ring-Independent Cytokinesis
Nolan Ko, Ryuichi Nishihama, Gregory H. Tully, Denis Ostapenko, Mark J. Solomon, David O. Morgan, John R. Pringle
Mol Biol Cell. 2007 Dec; 18(12): 5139–5153. doi: 10.1091/mbc.E07-05-0509
PMCID:
PMC2096582
AbstractArticlePDF–2.3M

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