PMC Links for GEO Profiles (Select 62645523) - PMC

Select item 103825611.

Loss of Krüppel-like factor 9 deregulates both physiological gene expression and development

Laura Drepanos, Ian M. Gans, Janelle Grendler, Sophia Guitar, J. Heath Fuqua, Nathaniel J. Maki, Andrea R. Tilden, Joel H. Graber, James A. Coffman

Sci Rep. 2023; 13: 12239. Published online 2023 Jul 28. doi: 10.1038/s41598-023-39453-3

PMCID:: PMC10382561

Abstract Article PDF–4.7M

Select item 91720262.

Midnight/midday-synchronized expression of cryptochrome genes in the eyes of three teleost species, zebrafish, goldfish, and medaka

Marika Nakagawa, Keiko Okano, Yuya Saratani, Yosuke Shoji, Toshiyuki Okano

Zoological Lett. 2022; 8: 8. Published online 2022 Jun 7. doi: 10.1186/s40851-022-00192-4

PMCID:: PMC9172026

Abstract Article PDF–3.6M

Select item 86748373.

Rhythmic Clock Gene Expression in Atlantic Salmon Parr Brain

Charlotte M. Bolton, Michaël Bekaert, Mariann Eilertsen, Jon Vidar Helvik, Herve Migaud

Front Physiol. 2021; 12: 761109. Published online 2021 Dec 2. doi: 10.3389/fphys.2021.761109

PMCID:: PMC8674837

Abstract Article PDF–8.6M

Select item 70812204.

A photoperiodic time measurement served by the biphasic expression of Cryptochrome1ab in the zebrafish eye

Keiko Okano, Yuya Saratani, Ayumi Tamasawa, Yosuke Shoji, Riko Toda, Toshiyuki Okano

Sci Rep. 2020; 10: 5056. Published online 2020 Mar 19. doi: 10.1038/s41598-020-61877-4

PMCID:: PMC7081220

Abstract Article PDF–1.9M

Select item 63368125.

The clock components Period2, Cryptochrome1a, and Cryptochrome2a function in establishing light-dependent behavioral rhythms and/or total activity levels in zebrafish

Jun Hirayama, Yikelamu Alifu, Rin Hamabe, Sho Yamaguchi, Jun Tomita, Yusuke Maruyama, Yoichi Asaoka, Ken-ichi Nakahama, Teruya Tamaru, Ken Takamatsu, Nobuhiko Takamatsu, Atsuhiko Hattori, Sachiko Nishina, Noriyuki Azuma, Atsuo Kawahara, Kazuhiko Kume, Hiroshi Nishina

Sci Rep. 2019; 9: 196. Published online 2019 Jan 17. doi: 10.1038/s41598-018-37879-8

PMCID:: PMC6336812

Abstract Article PDF–3.0M

Select item 52406606.

Pth4, an ancient parathyroid hormone lost in eutherian mammals, reveals a new brain-to-bone signaling pathway

Paula Suarez-Bregua, Eva Torres-Nuñez, Ankur Saxena, Pedro Guerreiro, Ingo Braasch, David A. Prober, Paloma Moran, Jose Miguel Cerda-Reverter, Shao Jun Du, Fatima Adrio, Deborah M. Power, Adelino V. M. Canario, John H. Postlethwait, Marianne E. Bronner, Cristian Cañestro, Josep Rotllant

FASEB J. 2017 Feb; 31(2): 569–583. Published online 2016 Oct 24. doi: 10.1096/fj.201600815R

PMCID:: PMC5240660

Abstract Article

Select item 51477667.

Genetically Blocking the Zebrafish Pineal Clock Affects Circadian Behavior

Zohar Ben-Moshe Livne, Shahar Alon, Daniela Vallone, Yared Bayleyen, Adi Tovin, Inbal Shainer, Laura G. Nisembaum, Idit Aviram, Sima Smadja-Storz, Michael Fuentes, Jack Falcón, Eli Eisenberg, David C. Klein, Harold A. Burgess, Nicholas S. Foulkes, Yoav Gothilf

PLoS Genet. 2016 Nov; 12(11): e1006445. Published online 2016 Nov 21. doi: 10.1371/journal.pgen.1006445

PMCID:: PMC5147766

Abstract Article PDF–2.1M

Select item 48172298.

The spotted gar genome illuminates vertebrate evolution and facilitates human-to-teleost comparisons

Ingo Braasch, Andrew R. Gehrke, Jeramiah J. Smith, Kazuhiko Kawasaki, Tereza Manousaki, Jeremy Pasquier, Angel Amores, Thomas Desvignes, Peter Batzel, Julian Catchen, Aaron M. Berlin, Michael S. Campbell, Daniel Barrell, Kyle J. Martin, John F. Mulley, Vydianathan Ravi, Alison P. Lee, Tetsuya Nakamura, Domitille Chalopin, Shaohua Fan, Dustin Wcisel, Cristian Cañestro, Jason Sydes, Felix E. G. Beaudry, Yi Sun, Jana Hertel, Michael J. Beam, Mario Fasold, Mikio Ishiyama, Jeremy Johnson, Steffi Kehr, Marcia Lara, John H. Letaw, Gary W. Litman, Ronda T. Litman, Masato Mikami, Tatsuya Ota, Nil Ratan Saha, Louise Williams, Peter F. Stadler, Han Wang, John S. Taylor, Quenton Fontenot, Allyse Ferrara, Stephen M. J. Searle, Bronwen Aken, Mark Yandell, Igor Schneider, Jeffrey A. Yoder, Jean-Nicolas Volff, Axel Meyer, Chris T. Amemiya, Byrappa Venkatesh, Peter W. H. Holland, Yann Guiguen, Julien Bobe, Neil H. Shubin, Federica Di Palma, Jessica Alföldi, Kerstin Lindblad-Toh, John H. Postlethwait

Nat Genet. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Genet. 2016 Apr; 48(4): 427–437. Published online 2016 Mar 7. doi: 10.1038/ng.3526

PMCID:: PMC4817229

Abstract Article PDF–2.6M

Select item 47619279.

Progestins alter photo-transduction cascade and circadian rhythm network in eyes of zebrafish (Danio rerio)

Yanbin Zhao, Karl Fent

Sci Rep. 2016; 6: 21559. Published online 2016 Feb 22. doi: 10.1038/srep21559

PMCID:: PMC4761927

Abstract Article PDF–1.8M

Select item 463413710.

RFX transcription factors are essential for hearing in mice

Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano

Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549

PMCID:: PMC4634137

Abstract Article PDF–5.5M

Select item 455852111.

Molecular evolution and functional divergence of zebrafish (Danio rerio) cryptochrome genes

Chao Liu, Jia Hu, Chunxiang Qu, Lin Wang, Guodong Huang, Pengfei Niu, Zhaomin Zhong, Fashui Hong, Guanghui Wang, John H. Postlethwait, Han Wang

Sci Rep. 2015; 5: 8113. Published online 2015 Jan 29. doi: 10.1038/srep08113

PMCID:: PMC4558521

Abstract Article PDF–3.9M

Select item 435018112.

Eumetazoan Cryptochrome Phylogeny and Evolution

Marion F. Haug, Matthias Gesemann, Viktor Lazović, Stephan C.F. Neuhauss

Genome Biol Evol. 2015 Feb; 7(2): 601–619. Published online 2015 Jan 18. doi: 10.1093/gbe/evv010

PMCID:: PMC4350181

Abstract Article PDF–1.8M

Select item 352729313.

Systematic Identification of Rhythmic Genes Reveals camk1gb as a New Element in the Circadian Clockwork

Adi Tovin, Shahar Alon, Zohar Ben-Moshe, Philipp Mracek, Gad Vatine, Nicholas S. Foulkes, Jasmine Jacob-Hirsch, Gideon Rechavi, Reiko Toyama, Steven L. Coon, David C. Klein, Eli Eisenberg, Yoav Gothilf

PLoS Genet. 2012 Dec; 8(12): e1003116. Published online 2012 Dec 20. doi: 10.1371/journal.pgen.1003116

PMCID:: PMC3527293

Abstract Article PDF–1.0M

Select item 317805914.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 273960415.

Comparative Photochemistry of Animal Type 1 and Type 4 Cryptochromes

Nuri Ozturk, Christopher P. Selby, Sang-Hun Song, Rui Ye, Chuang Tan, Ya-Ting Kao, Dongping Zhong, Aziz Sancar

Biochemistry. 2009 Sep 15; 48(36): 8585–8593. Published online 2009 Aug 8. doi: 10.1021/bi901043s

PMCID:: PMC2739604

Abstract Article PDF–4.6M

Select item 13924116.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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