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Items: 1 to 20 of 43

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Screening of selected ageing-related proteins that extend chronological life span in yeast Saccharomyces cerevisiae
Jee Whu Lee, Tee Gee Ong, Mohammed Razip Samian, Aik-Hong Teh, Nobumoto Watanabe, Hiroyuki Osada, Eugene Boon Beng Ong
Sci Rep. 2021; 11: 24148. Published online 2021 Dec 17. doi: 10.1038/s41598-021-03490-7
PMCID:
PMC8683414
AbstractArticlePDF–3.4M
5.
Phylogenetic Comparison and Splicing Analysis of the U1 snRNP-specific Protein U1C in Eukaryotes
Kai-Lu Zhang, Jian-Li Zhou, Jing-Fang Yang, Yu-Zhen Zhao, Debatosh Das, Ge-Fei Hao, Caie Wu, Jianhua Zhang, Fu-Yuan Zhu, Mo-Xian Chen, Shao-Ming Zhou
Front Mol Biosci. 2021; 8: 696319. Published online 2021 Sep 9. doi: 10.3389/fmolb.2021.696319
PMCID:
PMC8458698
AbstractArticlePDF–4.4M
6.
Structural insights into how Prp5 proofreads the pre-mRNA branch site
Zhenwei Zhang, Norbert Rigo, Olexandr Dybkov, Jean-Baptiste Fourmann, Cindy L. Will, Vinay Kumar, Henning Urlaub, Holger Stark, Reinhard Lührmann
Nature. 2021; 596(7871): 296–300. Published online 2021 Aug 4. doi: 10.1038/s41586-021-03789-5
PMCID:
PMC8357632
AbstractArticlePDF–16M
7.
Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2
Lisbeth-Carolina Aguilar, Biplab Paul, Taylor Reiter, Louis Gendron, Arvind Arul Nambi Rajan, Rachel Montpetit, Christian Trahan, Sebastian Pechmann, Marlene Oeffinger, Ben Montpetit
Nucleic Acids Res. 2020 Nov 18; 48(20): 11675–11694. Published online 2020 Nov 2. doi: 10.1093/nar/gkaa964
PMCID:
PMC7672433
AbstractArticlePDF–6.0M
8.
Structure of the yeast spliceosomal post-catalytic P complex
Shiheng Liu, Xueni Li, Lingdi Zhang, Jiansen Jiang, Ryan C. Hill, Yanxiang Cui, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Science. Author manuscript; available in PMC 2018 Feb 27.
Published in final edited form as: Science. 2017 Dec 8; 358(6368): 1278–1283. Published online 2017 Nov 16. doi: 10.1126/science.aar3462
PMCID:
PMC5828012
AbstractArticlePDF–976K
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
11.
CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing
Xueni Li, Shiheng Liu, Jiansen Jiang, Lingdi Zhang, Sara Espinosa, Ryan C. Hill, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Nat Commun. 2017; 8: 1035. Published online 2017 Oct 19. doi: 10.1038/s41467-017-01241-9
Correction in:
Nat Commun. 2018; 9: 1495.
PMCID:
PMC5648754
AbstractArticlePDF–5.7M
12.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
13.
Structure of a spliceosome remodelled for exon ligation
Sebastian M. Fica, Chris Oubridge, Wojciech P. Galej, Max E. Wilkinson, Xiao-Chen Bai, Andrew J. Newman, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2017 Jul 11.
Published in final edited form as: Nature. 2017 Feb 16; 542(7641): 377–380. Published online 2017 Jan 11. doi: 10.1038/nature21078
PMCID:
PMC5321579
AbstractArticlePDF–5.6M
14.
Will the circle be unbroken: specific mutations in the yeast Sm protein ring expose a requirement for assembly factor Brr1, a homolog of Gemin2
Beate Schwer, Allen J. Roth, Stewart Shuman
RNA. 2017 Mar; 23(3): 420–430. doi: 10.1261/rna.059881.116
PMCID:
PMC5311505
AbstractArticlePDF–1.7M
15.
Structure–function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring
Beate Schwer, Joshua Kruchten, Stewart Shuman
RNA. 2016 Sep; 22(9): 1320–1328. doi: 10.1261/rna.057448.116
PMCID:
PMC4986888
AbstractArticlePDF–1.2M
16.
Active yeast telomerase shares subunits with ribonucleoproteins RNase P and RNase MRP
Bruno Lemieux, Nancy Laterreur, Anna Perederina, Jean-François Noël, Marie-Line Dubois, Andrey S. Krasilnikov, Raymund J. Wellinger
Cell. Author manuscript; available in PMC 2017 May 19.
Published in final edited form as: Cell. 2016 May 19; 165(5): 1171–1181. Published online 2016 May 5. doi: 10.1016/j.cell.2016.04.018
PMCID:
PMC4874874
AbstractArticlePDF–1.3M
17.
CryoEM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Å resolution
Thi Hoang Duong Nguyen, Wojciech P. Galej, Xiao-chen Bai, Chris Oubridge, Andrew J. Newman, Sjors H. W. Scheres, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2016 Aug 18.
Published in final edited form as: Nature. 2016 Feb 18; 530(7590): 298–302. Published online 2016 Feb 1. doi: 10.1038/nature16940
PMCID:
PMC4762201
AbstractArticlePDF–6.1M
18.
Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly
Allison L. Didychuk, Eric J. Montemayor, David A. Brow, Samuel E. Butcher
Nucleic Acids Res. 2016 Feb 18; 44(3): 1398–1410. Published online 2015 Dec 15. doi: 10.1093/nar/gkv1374
PMCID:
PMC4756825
AbstractArticlePDF–9.3M
19.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
20.
Proteomics of yeast telomerase identified Cdc48-Npl4-Ufd1 and Ufd4 as regulators of Est1 and telomere length
Kah-Wai Lin, Karin R. McDonald, Amanda J. Guise, Angela Chan, Ileana M. Cristea, Virginia A. Zakian
Nat Commun. 2015; 6: 8290. Published online 2015 Sep 14. doi: 10.1038/ncomms9290
PMCID:
PMC4579843
AbstractArticlePDF–1.6M

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