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Items: 1 to 20 of 67

1.
Histone deacetylase Hos2 regulates protein expression noise by potentially modulating the protein translation machinery
Wei-Han Lin, Florica J G Opoc, Chia-Wei Liao, Kevin R Roy, Lars M Steinmetz, Jun-Yi Leu
Nucleic Acids Res. 2024 Jul 22; 52(13): 7556–7571. Published online 2024 May 23. doi: 10.1093/nar/gkae432
PMCID:
PMC11260488
AbstractArticlePDF–1.0M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates
Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus
Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.
Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2
PMCID:
PMC10868727
AbstractArticlePDF–7.0M
4.
A Protein–Protein Interaction Analysis Suggests a Wide Range of New Functions for the p21-Activated Kinase (PAK) Ste20
Ifeoluwapo Matthew Joshua, Meng Lin, Ariestia Mardjuki, Alessandra Mazzola, Thomas Höfken
Int J Mol Sci. 2023 Nov; 24(21): 15916. Published online 2023 Nov 2. doi: 10.3390/ijms242115916
PMCID:
PMC10647699
AbstractArticlePDF–5.4M
5.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
8.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
9.
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Jason Zi Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828
PMCID:
PMC7507402
AbstractArticlePDF–1.8M
10.
GCN sensitive protein translation in yeast
William A. Barr, Ruchi B. Sheth, Jack Kwon, Jungwoo Cho, Jacob W. Glickman, Felix Hart, Om K. Chatterji, Kristen Scopino, Karen Voelkel-Meiman, Daniel Krizanc, Kelly M. Thayer, Michael P. Weir
PLoS One. 2020; 15(9): e0233197. Published online 2020 Sep 18. doi: 10.1371/journal.pone.0233197
PMCID:
PMC7500604
AbstractArticlePDF–2.3M
11.
Synthetic dosage lethal (SDL) interaction data of Hmt1 arginine methyltransferase
Dimitris Kyriakou, Mamantia Constantinou, Antonis Kirmizis
Data Brief. 2020 Aug; 31: 105885. Published online 2020 Jun 21. doi: 10.1016/j.dib.2020.105885
PMCID:
PMC7330151
AbstractArticlePDF–968K
12.
Chemogenomic study of gemcitabine using Saccharomyces cerevisiae as model cell—molecular insights about chemoresistance
Lucas de Sousa Cavalcante, Tales A. Costa-Silva, Tiago Antônio Souza, Susan Ienne, Gisele Monteiro
Braz J Microbiol. 2020 Jun; 51(2): 489–496. Published online 2019 Sep 12. doi: 10.1007/s42770-019-00154-7
PMCID:
PMC7203405
AbstractArticlePDF–735K
13.
Arginine methylation augments Sbp1 function in translation repression and decapping
Nupur Bhatter, Raju Roy, Shanaya Shah, Sneha P. Sastry, Sabnam Parbin, Rajan Iyappan, Siddharth Kankaria, Purusharth I. Rajyaguru
FEBS J. 2019 Dec; 286(23): 4693–4708. Published online 2019 Sep 23. doi: 10.1111/febs.15057
PMCID:
PMC6916386
AbstractArticlePDF–2.7M
14.
Experimental evolution reveals a general role for the methyltransferase Hmt1 in noise buffering
Shu-Ting You, Yu-Ting Jhou, Cheng-Fu Kao, Jun-Yi Leu
PLoS Biol. 2019 Oct; 17(10): e3000433. Published online 2019 Oct 15. doi: 10.1371/journal.pbio.3000433
PMCID:
PMC6814240
AbstractArticlePDF–1.1M
15.
Robust repression of tRNA gene transcription during stress requires protein arginine methylation
Richoo B Davis, Neah Likhite, Christopher A Jackson, Tao Liu, Michael C Yu
Life Sci Alliance. 2019 Jun; 2(3): e201800261. Published online 2019 Jun 3. doi: 10.26508/lsa.201800261
PMCID:
PMC6549136
AbstractArticlePDF–2.0M
16.
Knockout of the Hmt1p Arginine Methyltransferase in Saccharomyces cerevisiae Leads to the Dysregulation of Phosphate-associated Genes and Processes
Samantha Z. Chia, Yu-Wen Lai, Daniel Yagoub, Sophie Lev, Joshua J. Hamey, Chi Nam Ignatius Pang, Desmarini Desmarini, Zhiliang Chen, Julianne T. Djordjevic, Melissa A. Erce, Gene Hart-Smith, Marc R. Wilkins
Mol Cell Proteomics. 2018 Dec; 17(12): 2462–2479. Published online 2018 Sep 11. doi: 10.1074/mcp.RA117.000214
PMCID:
PMC6283299
AbstractArticlePDF–1.4M
17.
A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A
Sultan Ciftci-Yilmaz, Wei-Chun Au, Prashant K. Mishra, Jessica R. Eisenstatt, Joy Chang, Anthony R. Dawson, Iris Zhu, Mahfuzur Rahman, Sven Bilke, Michael Costanzo, Anastasia Baryshnikova, Chad L. Myers, Paul S. Meltzer, David Landsman, Richard E. Baker, Charles Boone, Munira A. Basrai
Genetics. 2018 Sep; 210(1): 203–218. Published online 2018 Jul 16. doi: 10.1534/genetics.118.301305
PMCID:
PMC6116949
AbstractArticlePDF–2.1M
18.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M

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