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Items: 1 to 20 of 27

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker
Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0
PMCID:
PMC9673352
AbstractArticlePDF–2.6M
5.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
6.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
7.
Systematic analysis of bypass suppression of essential genes
Jolanda van Leeuwen, Carles Pons, Guihong Tan, Jason Zi Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone
Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828
PMCID:
PMC7507402
AbstractArticlePDF–1.8M
8.
Dosage suppression genetic interaction networks enhance functional wiring diagrams of the cell
Leslie Magtanong, Cheuk Hei Ho, Sarah L Barker, Wei Jiao, Anastasia Baryshnikova, Sondra Bahr, Andrew M Smith, Lawrence E Heisler, John S Choy, Elena Kuzmin, Kerry Andrusiak, Anna Kobylianski, Zhijian Li, Michael Costanzo, Munira A Basrai, Guri Giaever, Corey Nislow, Brenda Andrewa, Charles Boone
Nat Biotechnol. Author manuscript; available in PMC 2020 Jul 28.
Published in final edited form as: Nat Biotechnol. 2011 May 15; 29(6): 505–511. Published online 2011 May 15. doi: 10.1038/nbt.1855
PMCID:
PMC7386433
AbstractArticlePDF–1.0M
9.
The ribotoxin α-sarcin can cleave the sarcin/ricin loop on late 60S pre-ribosomes
Miriam Olombrada, Cohue Peña, Olga Rodríguez-Galán, Purnima Klingauf-Nerurkar, Daniela Portugal-Calisto, Michaela Oborská-Oplová, Martin Altvater, José G Gavilanes, Álvaro Martínez-del-Pozo, Jesús de la Cruz, Lucía García-Ortega, Vikram Govind Panse
Nucleic Acids Res. 2020 Jun 19; 48(11): 6210–6222. Published online 2020 May 4. doi: 10.1093/nar/gkaa315
PMCID:
PMC7293039
AbstractArticlePDF–12M
10.
The Sir4 H‐BRCT domain interacts with phospho‐proteins to sequester and repress yeast heterochromatin
Ishan Deshpande, Jeremy J Keusch, Kiran Challa, Vytautas Iesmantavicius, Susan M Gasser, Heinz Gut
EMBO J. 2019 Oct 15; 38(20): e101744. Published online 2019 Sep 12. doi: 10.15252/embj.2019101744
Correction in:
EMBO J. 2020 Jan 2; 39(1): e103976.
PMCID:
PMC6792019
AbstractArticlePDF–2.0M
11.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
12.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
13.
A non-canonical mechanism for Crm1-export cargo complex assembly
Ute Fischer, Nico Schäuble, Sabina Schütz, Martin Altvater, Yiming Chang, Marius Boulos Faza, Vikram Govind Panse
eLife. 2015; 4: e05745. Published online 2015 Apr 21. doi: 10.7554/eLife.05745
PMCID:
PMC4402694
AbstractArticlePDF–3.9M
14.
The nuclear localization of SWI/SNF proteins is subjected to oxygen regulation
Ranita Ghosh Dastidar, Jagmohan Hooda, Ajit Shah, Thai M Cao, Robert Michael Henke, Li Zhang
Cell Biosci. 2012; 2: 30. Published online 2012 Aug 29. doi: 10.1186/2045-3701-2-30
PMCID:
PMC3489556
AbstractArticlePDF–2.4M
15.
Role of Mex67-Mtr2 in the Nuclear Export of 40S Pre-Ribosomes
Marius B. Faza, Yiming Chang, Laura Occhipinti, Stefan Kemmler, Vikram G. Panse
PLoS Genet. 2012 Aug; 8(8): e1002915. Published online 2012 Aug 30. doi: 10.1371/journal.pgen.1002915
PMCID:
PMC3431309
AbstractArticlePDF–8.9M
16.
Characterization of Cell Cycle Specific Protein Interaction Networks of the Yeast 26S Proteasome Complex by the QTAX Strategy
Robyn M. Kaake, Tijana Milenković, Nataša Pržulj, Peter Kaiser, Lan Huang
J Proteome Res. Author manuscript; available in PMC 2011 Jul 21.
Published in final edited form as: J Proteome Res. 2010 Apr 5; 9(4): 2016–2029. doi: 10.1021/pr1000175
PMCID:
PMC3140958
AbstractArticlePDF–3.2M
17.
An allosteric mechanism to displace nuclear export cargo from CRM1 and RanGTP by RanBP1
Masako Koyama, Yoshiyuki Matsuura
EMBO J. 2010 Jun 16; 29(12): 2002–2013. Published online 2010 May 18. doi: 10.1038/emboj.2010.89
PMCID:
PMC2892370
AbstractArticlePDF–1.8M
18.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
19.
Rational Extension of the Ribosome Biogenesis Pathway Using Network-Guided Genetics
Zhihua Li, Insuk Lee, Emily Moradi, Nai-Jung Hung, Arlen W. Johnson, Edward M. Marcotte
PLoS Biol. 2009 Oct; 7(10): e1000213. Published online 2009 Oct 6. doi: 10.1371/journal.pbio.1000213
PMCID:
PMC2749941
AbstractArticlePDF–7.2M
20.
A Genetic Interaction Map of RNA Processing Factors Reveals Links Between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing
Gwendolyn M. Wilmes, Megan Bergkessel, Sourav Bandyopadhyay, Michael Shales, Hannes Braberg, Gerard Cagney, Sean R. Collins, Gregg B. Whitworth, Tracy L. Kress, Jonathan S. Weissman, Trey Ideker, Christine Guthrie, Nevan J. Krogan
Mol Cell. Author manuscript; available in PMC 2009 Dec 5.
Published in final edited form as: Mol Cell. 2008 Dec 5; 32(5): 735–746. doi: 10.1016/j.molcel.2008.11.012
PMCID:
PMC2644724
AbstractArticlePDF–2.8M

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