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Items: 18

1.
Histone demethylase KDM5D upregulation drives sex differences in colon cancer
Jiexi Li, Zhengdao Lan, Wenting Liao, James W. Horner, Xueping Xu, Jielin Liu, Yohei Yoshihama, Shan Jiang, Hong Seok Shim, Max Slotnik, Kyle A. LaBella, Chang-Jiun Wu, Kenneth Dunner, Jr., Wen-Hao Hsu, Rumi Lee, Isha Khanduri, Christopher Terranova, Kadir Akdemir, Deepavali Chakravarti, Xiaoying Shang, Denise J. Spring, Y. Alan Wang, Ronald A. DePinho
Nature. Author manuscript; available in PMC 2023 Sep 27.
Published in final edited form as: Nature. 2023 Jul; 619(7970): 632–639. Published online 2023 Jun 21. doi: 10.1038/s41586-023-06254-7
PMCID:
PMC10529424
AbstractArticlePDF–6.1M
2.
Expansion of interferon inducible gene pool via USP18 inhibition promotes cancer cell pyroptosis
Kei-ichiro Arimoto, Sayuri Miyauchi, Ty D. Troutman, Yue Zhang, Mengdan Liu, Samuel A. Stoner, Amanda G. Davis, Jun-Bao Fan, Yi-Jou Huang, Ming Yan, Christopher K. Glass, Dong-Er Zhang
Nat Commun. 2023; 14: 251. Published online 2023 Jan 17. doi: 10.1038/s41467-022-35348-5
PMCID:
PMC9842760
AbstractArticlePDF–4.8M
3.
Transcription Factor Protein Interactomes Reveal Genetic Determinants in Heart Disease
Barbara Gonzalez-Teran, Maureen Pittman, Franco Felix, Reuben Thomas, Desmond Richmond-Buccola, Ruth Hüttenhain, Krishna Choudhary, Elisabetta Moroni, Mauro W. Costa, Yu Huang, Arun Padmanabhan, Michael Alexanian, Clara Youngna Lee, Bonnie E. J. Maven, Kaitlen Samse-Knapp, Sarah U. Morton, Michael McGregor, Casey A. Gifford, J. G. Seidman, Christine E. Seidman, Bruce D. Gelb, Giorgio Colombo, Bruce R. Conklin, Brian L. Black, Benoit G. Bruneau, Nevan J. Krogan, Katherine S. Pollard, Deepak Srivastava
Cell. Author manuscript; available in PMC 2023 Mar 3.
Published in final edited form as: Cell. 2022 Mar 3; 185(5): 794–814.e30. Published online 2022 Feb 18. doi: 10.1016/j.cell.2022.01.021
PMCID:
PMC8923057
AbstractArticlePDF–2.5M
4.
Proteome‐scale mapping of binding sites in the unstructured regions of the human proteome
Caroline Benz, Muhammad Ali, Izabella Krystkowiak, Leandro Simonetti, Ahmed Sayadi, Filip Mihalic, Johanna Kliche, Eva Andersson, Per Jemth, Norman E Davey, Ylva Ivarsson
Mol Syst Biol. 2022 Jan; 18(1): e10584. Published online 2022 Jan 19. doi: 10.15252/msb.202110584
PMCID:
PMC8769072
AbstractArticlePDF–2.9M
5.
Y disruption, autosomal hypomethylation and poor male lung cancer survival
Saffron A. G. Willis-Owen, Clara Domingo-Sabugo, Elizabeth Starren, Liming Liang, Maxim B. Freidin, Madeleine Arseneault, Youming Zhang, Shir Kiong Lu, Sanjay Popat, Eric Lim, Andrew G. Nicholson, Yasser Riazalhosseini, Mark Lathrop, William O. C. Cookson, Miriam F. Moffatt
Sci Rep. 2021; 11: 12453. Published online 2021 Jun 14. doi: 10.1038/s41598-021-91907-8
PMCID:
PMC8203787
AbstractArticlePDF–1.2M
6.
X- and Y-linked chromatin-modifying genes as regulators of sex-specific cancer incidence and prognosis
Rossella Tricarico, Emmanuelle Nicolas, Michael J. Hall, Erica A. Golemis
Clin Cancer Res. Author manuscript; available in PMC 2021 May 1.
Published in final edited form as: Clin Cancer Res. 2020 Nov 1; 26(21): 5567–5578. Published online 2020 Jul 30. doi: 10.1158/1078-0432.CCR-20-1741
PMCID:
PMC7642178
AbstractArticlePDF–1.4M
7.
Proteomics based identification of KDM5 histone demethylases associated with cardiovascular disease
Marika Mokou, Julie Klein, Manousos Makridakis, Vasiliki Bitsika, Jean-Loup Bascands, Jean Sebastien Saulnier-Blache, William Mullen, Michael Sacherer, Jerome Zoidakis, Burkert Pieske, Harald Mischak, Maria G. Roubelakis, Joost P. Schanstra, Antonia Vlahou
EBioMedicine. 2019 Mar; 41: 91–104. Published online 2019 Feb 28. doi: 10.1016/j.ebiom.2019.02.040
PMCID:
PMC6443027
AbstractArticlePDF–4.5M
8.
ATR inhibition controls aggressive prostate tumors deficient in Y-linked histone demethylase KDM5D
Kazumasa Komura, Yuki Yoshikawa, Teppei Shimamura, Goutam Chakraborty, Travis A. Gerke, Kunihiko Hinohara, Kalyani Chadalavada, Seong Ho Jeong, Joshua Armenia, Shin-Yi Du, Ying Z. Mazzu, Kohei Taniguchi, Naokazu Ibuki, Clifford A. Meyer, Gouri J. Nanjangud, Teruo Inamoto, Gwo-Shu Mary Lee, Lorelei A. Mucci, Haruhito Azuma, Christopher J. Sweeney, Philip W. Kantoff
J Clin Invest. 2018 Jul 2; 128(7): 2979–2995. Published online 2018 Jun 4. doi: 10.1172/JCI96769
PMCID:
PMC6025984
AbstractArticlePDF–17M
9.
Resistance to docetaxel in prostate cancer is associated with androgen receptor activation and loss of KDM5D expression
Kazumasa Komura, Seong Ho Jeong, Kunihiko Hinohara, Fangfang Qu, Xiaodong Wang, Masayuki Hiraki, Haruhito Azuma, Gwo-Shu Mary Lee, Philip W. Kantoff, Christopher J. Sweeney
Proc Natl Acad Sci U S A. 2016 May 31; 113(22): 6259–6264. Published online 2016 May 16. doi: 10.1073/pnas.1600420113
PMCID:
PMC4896695
AbstractArticlePDF–1.1M
10.
Multiplexed barcoded CRISPR-Cas9 screening enabled by CombiGEM
Alan S. L. Wong, Gigi C. G. Choi, Cheryl H. Cui, Gabriela Pregernig, Pamela Milani, Miriam Adam, Samuel D. Perli, Samuel W. Kazer, Aleth Gaillard, Mario Hermann, Alex K. Shalek, Ernest Fraenkel, Timothy K. Lu
Proc Natl Acad Sci U S A. 2016 Mar 1; 113(9): 2544–2549. Published online 2016 Feb 10. doi: 10.1073/pnas.1517883113
PMCID:
PMC4780610
AbstractArticlePDF–918K
11.
JARID1D is a suppressor and prognostic marker of prostate cancer invasion and metastasis
Na Li, Shilpa S. Dhar, Tsai-Yu Chen, Pu-Yeh Kan, Yongkun Wei, Jae-Hwan Kim, Chia-Hsin Chan, Hui-Kuan Lin, Mien-Chie Hung, Min Gyu Lee
Cancer Res. Author manuscript; available in PMC 2017 Feb 15.
Published in final edited form as: Cancer Res. 2016 Feb 15; 76(4): 831–843. Published online 2016 Jan 8. doi: 10.1158/0008-5472.CAN-15-0906
PMCID:
PMC4755879
AbstractArticlePDF–3.7M
12.
Investigation of Histone Lysine-Specific Demethylase 5D (KDM5D) Isoform Expression in Prostate Cancer Cell Lines: a System Approach
Zohreh Jangravi, Mohammad Najafi, Mohammd Shabani
Iran Biomed J. 2016 Apr; 20(2): 117–121. doi: 10.7508/ibj.2016.02.007
PMCID:
PMC4726892
AbstractArticlePDF–339K
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
H-Y Incompatibility Predicts Short-Term Outcomes for Kidney Transplant Recipients
S. Joseph Kim, John S. Gill
J Am Soc Nephrol. 2009 Sep; 20(9): 2025–2033. doi: 10.1681/ASN.2008101110
PMCID:
PMC2736773
AbstractArticle
15.
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406
PMCID:
PMC1356129
AbstractArticlePDF–438K
16.
Antibody responses to H-Y minor histocompatibility antigens correlate with chronic graft-versus-host disease and disease remission
David B. Miklos, Haesook T. Kim, Katherine H. Miller, Luxuan Guo, Emmanuel Zorn, Stephanie J. Lee, Ephraim P. Hochberg, Catherine J. Wu, Edwin P. Alyea, Corey Cutler, Vincent Ho, Robert J. Soiffer, Joseph H. Antin, Jerome Ritz
Blood. Author manuscript; available in PMC 2006 Jan 25.
Published in final edited form as: Blood. 2005 Apr 1; 105(7): 2973–2978. Published online 2004 Dec 21. doi: 10.1182/blood-2004-09-3660
PMCID:
PMC1350982
AbstractArticlePDF–786K
17.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
18.
Population genetic implications from sequence variation in four Y chromosome genes
Peidong Shen, Frank Wang, Peter A. Underhill, Claudia Franco, Wei-Hsien Yang, Adriane Roxas, Raphael Sung, Alice A. Lin, Richard W. Hyman, Douglas Vollrath, Ronald W. Davis, L. Luca Cavalli-Sforza, Peter J. Oefner
Proc Natl Acad Sci U S A. 2000 Jun 20; 97(13): 7354–7359. doi: 10.1073/pnas.97.13.7354
PMCID:
PMC16549
AbstractArticlePDF–202K

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