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Items: 17

1.
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome
Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2022 May 27.
Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011
PMCID:
PMC8165030
AbstractArticlePDF–2.2M
2.
Non-coding variants in MYH11, FZD3, and SORCS3 are associated with dementia in women
Elizabeth E. Blue, Timothy A. Thornton, Charles Kooperberg, Simin Liu, Jean Wactawski-Wende, JoAnn Manson, Lew Kuller, Kathleen Hayden, Alexander P. Reiner
Alzheimers Dement. Author manuscript; available in PMC 2022 Feb 1.
Published in final edited form as: Alzheimers Dement. 2021 Feb; 17(2): 215–225. Published online 2020 Sep 23. doi: 10.1002/alz.12181
PMCID:
PMC7920533
AbstractArticlePDF–660K
3.
Down-regulation of FZD3 receptor suppresses growth and metastasis of human melanoma independently of canonical WNT signaling
Chen Li, Vincent Nguyen, Kaitlyn N. Clark, Tara Zahed, Shawn Sharkas, Fabian V. Filipp, Alexander D. Boiko
Proc Natl Acad Sci U S A. 2019 Mar 5; 116(10): 4548–4557. Published online 2019 Feb 21. doi: 10.1073/pnas.1813802116
PMCID:
PMC6410844
AbstractArticlePDF–2.7M
4.
Architecture of the human interactome defines protein communities and disease networks
Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper
Nature. Author manuscript; available in PMC 2017 Nov 17.
Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366
PMCID:
PMC5531611
AbstractArticlePDF–2.7M
5.
The BioPlex Network: A Systematic Exploration of the Human Interactome
Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi
Cell. Author manuscript; available in PMC 2016 Jul 16.
Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043
PMCID:
PMC4617211
AbstractArticlePDF–2.2M
6.
Clinical Significance of Frizzled Homolog 3 Protein in Colorectal Cancer Patients
Sze Chuen Cesar Wong, Catherine Wan He, Charles Ming Lok Chan, Amanda Kit Ching Chan, Heong Ting Wong, Moon Tong Cheung, Lewis Lai Yin Luk, Thomas Chi Chuen Au, Man Kin Chiu, Brigette Buig Yue Ma, Anthony Tak Cheung Chan
PLoS One. 2013; 8(11): e79481. Published online 2013 Nov 8. doi: 10.1371/journal.pone.0079481
PMCID:
PMC3821856
AbstractArticlePDF–2.7M
7.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
8.
MicroRNA-related genetic variations as predictors for risk of second primary tumor and/or recurrence in patients with early-stage head and neck cancer
Xiaofan Zhang, Hushan Yang, J.Jack Lee, Edward Kim, Scott M. Lippman, Fadlo R. Khuri, Margaret R. Spitz, Reuben Lotan, Waun K. Hong, Xifeng Wu
Carcinogenesis. 2010 Dec; 31(12): 2118–2123. Published online 2010 Sep 5. doi: 10.1093/carcin/bgq177
PMCID:
PMC3105587
AbstractArticlePDF–236K
9.
Direct interaction between NHERF1 and Frizzled regulates ß-catenin signaling
David S. Wheeler, Stacey R. Barrick, Melanie J. Grubisha, Adam M. Brufsky, Peter A. Friedman, Guillermo Romero
Oncogene. Author manuscript; available in PMC 2011 Jul 6.
Published in final edited form as: Oncogene. 2011 Jan 6; 30(1): 32–42. Published online 2010 Aug 30. doi: 10.1038/onc.2010.389
PMCID:
PMC2995822
AbstractArticlePDF–1.2M
10.
Sequence requirement and subtype specificity in the high-affinity interaction between human frizzled and dishevelled proteins
Chandanamali Punchihewa, Antonio M Ferreira, Robert Cassell, Patrick Rodrigues, Naoaki Fujii
Protein Sci. 2009 May; 18(5): 994–1002. Published online 2009 Mar 16. doi: 10.1002/pro.109
Correction in:
Protein Sci. 2009 Jun; 18(6): 1333.
PMCID:
PMC2771301
AbstractArticlePDF–430K
11.
The Frizzled 3 gene is associated with methamphetamine psychosis in the Japanese population
Makiko Kishimoto, Hiroshi Ujike, Yuko Okahisa, Tatsuya Kotaka, Manabu Takaki, Masafumi Kodama, Toshiya Inada, Mitsuhiko Yamada, Naohisa Uchimura, Nakao Iwata, Ichiro Sora, Masaomi Iyo, Norio Ozaki, Shigetoshi Kuroda
Behav Brain Funct. 2008; 4: 37. Published online 2008 Aug 15. doi: 10.1186/1744-9081-4-37
PMCID:
PMC2542390
AbstractArticlePDF–259K
12.
The Postsynaptic Density 95/Disc-Large/Zona Occludens Protein Syntenin Directly Interacts with Frizzled 7 and Supports Noncanonical Wnt Signaling
Annouck Luyten, Eva Mortier, Claude Van Campenhout, Vincent Taelman, Gisèle Degeest, Gunther Wuytens, Kathleen Lambaerts, Guido David, Eric J. Bellefroid, Pascale Zimmermann
Mol Biol Cell. 2008 Apr; 19(4): 1594–1604. doi: 10.1091/mbc.E07-08-0832
PMCID:
PMC2291413
AbstractArticlePDF–2.4M
13.
Signal peptide prediction based on analysis of experimentally verified cleavage sites
Zemin Zhang, William J. Henzel
Protein Sci. 2004 Oct; 13(10): 2819–2824. doi: 10.1110/ps.04682504
PMCID:
PMC2286551
AbstractArticlePDF–125K
14.
Wnt-3a and Dickkopf-1 Stimulate Neurite Outgrowth in Ewing Tumor Cells via a Frizzled3- and c-Jun N-Terminal Kinase-Dependent Mechanism
Yoshimi Endo, Elspeth Beauchamp, David Woods, William G. Taylor, Jeffrey A. Toretsky, Aykut Üren, Jeffrey S. Rubin
Mol Cell Biol. 2008 Apr; 28(7): 2368–2379. Published online 2008 Jan 22. doi: 10.1128/MCB.01780-07
PMCID:
PMC2268413
AbstractArticlePDF–842K
15.
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406
PMCID:
PMC1356129
AbstractArticlePDF–438K
16.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
17.
Purification and molecular cloning of a secreted, Frizzled-related antagonist of Wnt action
Paul W. Finch, Xi He, Michael J. Kelley, Aykut Üren, R. Paul Schaudies, Nicholas C. Popescu, Stuart Rudikoff, Stuart A. Aaronson, Harold E. Varmus, Jeffrey S. Rubin
Proc Natl Acad Sci U S A. 1997 Jun 24; 94(13): 6770–6775. doi: 10.1073/pnas.94.13.6770
PMCID:
PMC21233
AbstractArticlePDF–409K

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