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Select item 95262561.

A standardized nomenclature for mammalian histone genes

Ruth L. Seal, Paul Denny, Elspeth A. Bruford, Anna K. Gribkova, David Landsman, William F. Marzluff, Monica McAndrews, Anna R. Panchenko, Alexey K. Shaytan, Paul B. Talbert

Epigenetics Chromatin. 2022; 15: 34. Published online 2022 Oct 1. doi: 10.1186/s13072-022-00467-2

PMCID:: PMC9526256

Abstract Article PDF–1.1M

Select item 90713842.

Multivalent DNA and nucleosome acidic patch interactions specify VRK1 mitotic localization and activity

Gabrielle R Budziszewski, Yani Zhao, Cathy J Spangler, Katarzyna M Kedziora, Michael R Williams, Dalal N Azzam, Aleksandra Skrajna, Yuka Koyama, Andrew P Cesmat, Holly C Simmons, Eyla C Arteaga, Joshua D Strauss, Dmitri Kireev, Robert K McGinty

Nucleic Acids Res. 2022 May 6; 50(8): 4355–4371. Published online 2022 Apr 7. doi: 10.1093/nar/gkac198

PMCID:: PMC9071384

Abstract Article PDF–8.7M

Select item 81650303.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 73220674.

RIG-I regulates myeloid differentiation by promoting TRIM25-mediated ISGylation

Song-Fang Wu, Li Xia, Xiao-Dong Shi, Yu-Jun Dai, Wei-Na Zhang, Jun-Mei Zhao, Wu Zhang, Xiang-Qin Weng, Jing Lu, Huang-Ying Le, Sheng-ce Tao, Jiang Zhu, Zhu Chen, Yue-Ying Wang, Saijuan Chen

Proc Natl Acad Sci U S A. 2020 Jun 23; 117(25): 14395–14404. Published online 2020 Jun 8. doi: 10.1073/pnas.1918596117

PMCID:: PMC7322067

Abstract Article PDF–2.7M

Select item 58269265.

VIRMA mediates preferential m⁶A mRNA methylation in 3′UTR and near stop codon and associates with alternative polyadenylation

Yanan Yue, Jun Liu, Xiaolong Cui, Jie Cao, Guanzheng Luo, Zezhou Zhang, Tao Cheng, Minsong Gao, Xiao Shu, Honghui Ma, Fengqin Wang, Xinxia Wang, Bin Shen, Yizhen Wang, Xinhua Feng, Chuan He, Jianzhao Liu

Cell Discov. 2018; 4: 10. Published online 2018 Feb 27. doi: 10.1038/s41421-018-0019-0

PMCID:: PMC5826926

Abstract Article PDF–2.3M

Select item 46853126.

The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis

Giorgio Oliviero, Nayla Munawar, Ariane Watson, Gundula Streubel, Gwendolyn Manning, Vivian Bardwell, Adrian P. Bracken, Gerard Cagney

Sci Rep. 2015; 5: 18388. Published online 2015 Dec 21. doi: 10.1038/srep18388

PMCID:: PMC4685312

Abstract Article PDF–1.5M

Select item 46463877.

ATDC (Ataxia Telangiectasia Group D Complementing) Promotes Radioresistance through an Interaction with the RNF8 Ubiquitin Ligase

Huibin Yang, Phillip L. Palmbos, Lidong Wang, Evelyn H. Kim, Gina M. Ney, Chao Liu, Jayendra Prasad, David E. Misek, Xiaochun Yu, Mats Ljungman, Diane M. Simeone

J Biol Chem. 2015 Nov 6; 290(45): 27146–27157. Published online 2015 Sep 17. doi: 10.1074/jbc.M115.665489

PMCID:: PMC4646387

Abstract Article PDF–4.1M

Select item 45873228.

Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage

Romain Drissi, Marie-Line Dubois, Mélanie Douziech, François-Michel Boisvert

Mol Cell Proteomics. 2015 Jul; 14(7): 2002–2013. Published online 2015 May 11. doi: 10.1074/mcp.M115.048991

PMCID:: PMC4587322

Abstract Article PDF–3.0M

Select item 42527669.

Structural insights into recognition of acetylated histone ligands by the BRPF1 bromodomain

Mulu Y. Lubula, Brian E. Eckenroth, Samuel Carlson, Amanda Poplawski, Maksymilian Chruszcz, Karen C. Glass

FEBS Lett. Author manuscript; available in PMC 2015 Nov 3.

Published in final edited form as: FEBS Lett. 2014 Nov 3; 588(21): 3844–3854. Published online 2014 Sep 30. doi: 10.1016/j.febslet.2014.09.028

PMCID:: PMC4252766

Abstract Article PDF–1.3M

Select item 377350510.

In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine

Simona Principe, E. Ellen Jones, Yunee Kim, Ankit Sinha, Julius O. Nyalwidhe, Jasmin Brooks, O. John Semmes, Dean A. Troyer, Raymond S. Lance, Thomas Kislinger, Richard R. Drake

Proteomics. Author manuscript; available in PMC 2014 May 1.

Published in final edited form as: Proteomics. 2013 May; 13(0): 1667–1671. Published online 2013 Apr 23. doi: 10.1002/pmic.201200561

PMCID:: PMC3773505

Abstract Article PDF–630K

Select item 340874411.

Multiple myeloma–associated chromosomal translocation activates orphan snoRNA ACA11 to suppress oxidative stress

Liang Chu, Mack Y. Su, Leonard B. Maggi, Jr., Lan Lu, Chelsea Mullins, Seth Crosby, Gaofeng Huang, Wee Joo Chng, Ravi Vij, Michael H. Tomasson

J Clin Invest. 2012 Aug 1; 122(8): 2793–2806. Published online 2012 Jul 2. doi: 10.1172/JCI63051

PMCID:: PMC3408744

Abstract Article PDF–6.0M

Select item 328530812.

Macro Histone H2A1.2 (MacroH2A1) Protein Suppresses Mitotic Kinase VRK1 during Interphase

Wanil Kim, Goutam Chakraborty, Sangjune Kim, Joon Shin, Choon-Ho Park, Min-Woo Jeong, Nagakumar Bharatham, Ho Sup Yoon, Kyong-Tai Kim

J Biol Chem. 2012 Feb 17; 287(8): 5278–5289. Published online 2011 Dec 22. doi: 10.1074/jbc.M111.281709

PMCID:: PMC3285308

Abstract Article PDF–2.9M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 300858614.

Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics

Eric J. Bennett, John Rush, Steven P. Gygi, J. Wade Harper

Cell. Author manuscript; available in PMC 2011 Dec 10.

Published in final edited form as: Cell. 2010 Dec 10; 143(6): 951–965. doi: 10.1016/j.cell.2010.11.017

PMCID:: PMC3008586

Abstract Article PDF–3.0M

Select item 257212715.

Molecular mimicry between IL-33 and KSHV for attachment to chromatin through the H2A–H2B acidic pocket

Lucie Roussel, Monique Erard, Corinne Cayrol, Jean-Philippe Girard

EMBO Rep. 2008 Oct; 9(10): 1006–1012. Published online 2008 Aug 8. doi: 10.1038/embor.2008.145

PMCID:: PMC2572127

Abstract Article PDF–1.2M

Select item 147290816.

DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of histone H2A

Steven Bergink, Florian A. Salomons, Deborah Hoogstraten, Tom A.M. Groothuis, Harm de Waard, Junxin Wu, Li Yuan, Elisabetta Citterio, Adriaan B. Houtsmuller, Jacques Neefjes, Jan H.J. Hoeijmakers, Wim Vermeulen, Nico P. Dantuma

Genes Dev. 2006 May 15; 20(10): 1343–1352. doi: 10.1101/gad.373706

PMCID:: PMC1472908

Abstract Article PDF–648K

Select item 52892817.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 39584718.

Nucleosomal histone kinase-1 phosphorylates H2A Thr 119 during mitosis in the early Drosophila embryo

Hitoshi Aihara, Takeya Nakagawa, Kiyoshi Yasui, Tsutomu Ohta, Susumu Hirose, Naoshi Dhomae, Koji Takio, Mayumi Kaneko, Yukio Takeshima, Masami Muramatsu, Takashi Ito

Genes Dev. 2004 Apr 15; 18(8): 877–888. doi: 10.1101/gad.1184604