PMC Links for GEO Profiles (Select 68865979) - PMC

Select item 100339371.

Assessment of community efforts to advance network-based prediction of protein–protein interactions

Xu-Wen Wang, Lorenzo Madeddu, Kerstin Spirohn, Leonardo Martini, Adriano Fazzone, Luca Becchetti, Thomas P. Wytock, István A. Kovács, Olivér M. Balogh, Bettina Benczik, Mátyás Pétervári, Bence Ágg, Péter Ferdinandy, Loan Vulliard, Jörg Menche, Stefania Colonnese, Manuela Petti, Gaetano Scarano, Francesca Cuomo, Tong Hao, Florent Laval, Luc Willems, Jean-Claude Twizere, Marc Vidal, Michael A. Calderwood, Enrico Petrillo, Albert-László Barabási, Edwin K. Silverman, Joseph Loscalzo, Paola Velardi, Yang-Yu Liu

Nat Commun. 2023; 14: 1582. Published online 2023 Mar 22. doi: 10.1038/s41467-023-37079-7

PMCID:: PMC10033937

Abstract Article PDF–1.5M

Select item 96903982.

Involvement of NINJ2 Protein in Inflammation and Blood–Brain Barrier Transmigration of Monocytes in Multiple Sclerosis

Melissa Sorosina, Silvia Peroni, Elisabetta Mascia, Silvia Santoro, Ana Maria Osiceanu, Laura Ferrè, Ferdinando Clarelli, Antonino Giordano, Miryam Cannizzaro, Filippo Martinelli Boneschi, Massimo Filippi, Federica Esposito

Genes (Basel) 2022 Nov; 13(11): 1946. Published online 2022 Oct 25. doi: 10.3390/genes13111946

PMCID:: PMC9690398

Abstract Article PDF–1.3M

Select item 87141503.

Functional rare variant in a C/EBPbeta binding site in NINJ2 gene increases the risk of coronary artery disease

Pengyun Wang, Yifan Wang, Huixin Peng, Jingjing Wang, Qian Zheng, Pengxia Wang, Jing Wang, Hongfu Zhang, Yufeng Huang, Liang Xiong, Rongfeng Zhang, Yunlong Xia, Qing K. Wang, Chengqi Xu

Aging (Albany NY) 2021 Dec 15; 13(23): 25393–25407. Published online 2021 Dec 12. doi: 10.18632/aging.203755

PMCID:: PMC8714150

Abstract Article PDF–1.0M

Select item 71699834.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 69329075.

Ninjurin2 overexpression promotes glioma cell growth

Li-Na Zhou, Ping Li, Shang Cai, Gang Li, Fang Liu

Aging (Albany NY) 2019 Dec 15; 11(23): 11136–11147. Published online 2019 Dec 2. doi: 10.18632/aging.102515

PMCID:: PMC6932907

Abstract Article PDF–2.6M

Select item 67741136.

Ninjurin2, a Novel Homophilic Adhesion Molecule, Is Expressed in Mature Sensory and Enteric Neurons and Promotes Neurite Outgrowth

Toshiyuki Araki, Jeffrey Milbrandt

J Neurosci. 2000 Jan 1; 20(1): 187–195. doi: 10.1523/JNEUROSCI.20-01-00187.2000

PMCID:: PMC6774113

Abstract Article PDF–573K

Select item 64855077.

Comparative gene expression profiling of in vitro differentiated megakaryocytes and erythroblasts identifies novel activatory and inhibitory platelet membrane proteins

Iain C. Macaulay, Marloes R. Tijssen, Daphne C. Thijssen-Timmer, Arief Gusnanto, Michael Steward, Philippa Burns, Cordelia F. Langford, Peter D. Ellis, Frank Dudbridge, Jaap-Jan Zwaginga, Nicholas A. Watkins, C. Ellen van der Schoot, Willem H. Ouwehand

Blood. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Blood. 2007 Apr 15; 109(8): 3260–3269. Published online 2006 Dec 27. doi: 10.1182/blood-2006-07-036269

PMCID:: PMC6485507

Abstract Article PDF–4.4M

Select item 42665888.

A proteome-scale map of the human interactome network

Thomas Rolland, Murat Taşan, Benoit Charloteaux, Samuel J. Pevzner, Quan Zhong, Nidhi Sahni, Song Yi, Irma Lemmens, Celia Fontanillo, Roberto Mosca, Atanas Kamburov, Susan D. Ghiassian, Xinping Yang, Lila Ghamsari, Dawit Balcha, Bridget E. Begg, Pascal Braun, Marc Brehme, Martin P. Broly, Anne-Ruxandra Carvunis, Dan Convery-Zupan, Roser Corominas, Jasmin Coulombe-Huntington, Elizabeth Dann, Matija Dreze, Amélie Dricot, Changyu Fan, Eric Franzosa, Fana Gebreab, Bryan J. Gutierrez, Madeleine F. Hardy, Mike Jin, Shuli Kang, Ruth Kiros, Guan Ning Lin, Katja Luck, Andrew MacWilliams, Jörg Menche, Ryan R. Murray, Alexandre Palagi, Matthew M. Poulin, Xavier Rambout, John Rasla, Patrick Reichert, Viviana Romero, Elien Ruyssinck, Julie M. Sahalie, Annemarie Scholz, Akash A. Shah, Amitabh Sharma, Yun Shen, Kerstin Spirohn, Stanley Tam, Alexander O. Tejeda, Shelly A. Wanamaker, Jean-Claude Twizere, Kerwin Vega, Jennifer Walsh, Michael E. Cusick, Yu Xia, Albert-László Barabási, Lilia M. Iakoucheva, Patrick Aloy, Javier De Las Rivas, Jan Tavernier, Michael A. Calderwood, David E. Hill, Tong Hao, Frederick P. Roth, Marc Vidal

Cell. Author manuscript; available in PMC 2015 Nov 20.

Published in final edited form as: Cell. 2014 Nov 20; 159(5): 1212–1226. doi: 10.1016/j.cell.2014.10.050

PMCID:: PMC4266588

Abstract Article PDF–3.1M

Select item 41825899.

Association between NINJ2 gene polymorphisms and ischemic stroke: a family-based case–control study

Yanping Zhu, Kuo Liu, Xun Tang, Jinwei Wang, Zhiping Yu, Yiqun Wu, Dafang Chen, Xueyin Wang, Kai Fang, Na Li, Shaoping Huang, Yonghua Hu

J Thromb Thrombolysis. 2014; 38(4): 470–476. Published online 2014 Mar 25. doi: 10.1007/s11239-014-1065-6

PMCID:: PMC4182589

Abstract Article PDF–197K

Select item 406901310.

Associations of NINJ2 Sequence Variants with Incident Ischemic Stroke in the Cohorts for Heart and Aging in Genomic Epidemiology (CHARGE) Consortium

Joshua C. Bis, Anita DeStefano, Xiaoming Liu, Jennifer A. Brody, Seung Hoan Choi, Benjamin F. J. Verhaaren, Stéphanie Debette, M. Arfan Ikram, Eyal Shahar, Kenneth R. Butler, Jr, Rebecca F. Gottesman, Donna Muzny, Christie L. Kovar, Bruce M. Psaty, Albert Hofman, Thomas Lumley, Mayetri Gupta, Philip A. Wolf, Cornelia van Duijn, Richard A. Gibbs, Thomas H. Mosley, W. T. Longstreth, Jr, Eric Boerwinkle, Sudha Seshadri, Myriam Fornage

PLoS One. 2014; 9(6): e99798. Published online 2014 Jun 24. doi: 10.1371/journal.pone.0099798

PMCID:: PMC4069013

Abstract Article PDF–383K

Select item 400459811.

Systematic identification of pathological lamin A interactors

Travis A. Dittmer, Nidhi Sahni, Nard Kubben, David E. Hill, Marc Vidal, Rebecca C. Burgess, Vassilis Roukos, Tom Misteli

Mol Biol Cell. 2014 May 1; 25(9): 1493–1510. doi: 10.1091/mbc.E14-02-0733

PMCID:: PMC4004598

Abstract Article PDF–3.5M

Select item 336873312.

NINJ2 SNP may affect the onset age of first-ever ischemic stroke without increasing silent cerebrovascular lesions

Dong-Eog Kim, Sang-Mi Noh, Sang-Wuk Jeong, Min-Ho Cha

BMC Res Notes. 2012; 5: 155. Published online 2012 Mar 20. doi: 10.1186/1756-0500-5-155

PMCID:: PMC3368733

Abstract Article PDF–2.8M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 310895014.

Genetic Polymorphisms of a Novel Vascular Susceptibility Gene, Ninjurin2 (NINJ2), Are Associated with a Decreased Risk of Alzheimer's Disease

Kun-Pei Lin, Shih-Yuan Chen, Liang-Chuan Lai, Yi-Ling Huang, Jen-Hau Chen, Ta-Fu Chen, Yu Sun, Li-Li Wen, Ping-Keung Yip, Yi-Min Chu, Wei J. Chen, Yen-Ching Chen

PLoS One. 2011; 6(6): e20573. Published online 2011 Jun 6. doi: 10.1371/journal.pone.0020573

PMCID:: PMC3108950

Abstract Article PDF–208K

Select item 297804615.

Failure to Validate Association between 12p13 Variants and Ischemic Stroke

International Stroke Genetics Consortium and Wellcome Trust Case–Control Consortium 2

N Engl J Med. Author manuscript; available in PMC 2010 Nov 10.

Published in final edited form as: N Engl J Med. 2010 Apr 22; 362(16): 1547–1550. doi: 10.1056/NEJMc0910050

PMCID:: PMC2978046

Article PDF–75K

Select item 276834816.

Genomewide Association Studies of Stroke

M. Arfan Ikram, Sudha Seshadri, Joshua C. Bis, Myriam Fornage, Anita L. DeStefano, Yurii S. Aulchenko, Stephanie Debette, Thomas Lumley, Aaron R. Folsom, Evita G. van den Herik, Michiel J. Bos, Alexa Beiser, Mary Cushman, Lenore J. Launer, Eyal Shahar, Maksim Struchalin, Yangchun Du, Nicole L. Glazer, Wayne D. Rosamond, Fernando Rivadeneira, Margaret Kelly-Hayes, Oscar L. Lopez, Josef Coresh, Albert Hofman, Charles DeCarli, Susan R. Heckbert, Peter J. Koudstaal, Qiong Yang, Nicholas L. Smith, Carlos S. Kase, Kenneth Rice, Talin Haritunians, Gerwin Roks, Paul L.M. de Kort, Kent D. Taylor, Lonneke M. de Lau, Ben A. Oostra, Andre G. Uitterlinden, Jerome I. Rotter, Eric Boerwinkle, Bruce M. Psaty, Thomas H. Mosley, Cornelia M. van Duijn, Monique M.B. Breteler, W.T. Longstreth, Jr., Philip A. Wolf

N Engl J Med. Author manuscript; available in PMC 2010 Apr 23.

Published in final edited form as: N Engl J Med. 2009 Apr 23; 360(17): 1718–1728. Published online 2009 Apr 15. doi: 10.1056/NEJMoa0900094

PMCID:: PMC2768348

Abstract Article PDF–1.2M

Select item 52892817.

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)

Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504

Correction in:: Genome Res. 2006 Jun; 16(6): 804.

PMCID:: PMC528928

Abstract Article PDF–140K

Select item 13924118.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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