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Items: 1 to 20 of 32

1.
The deubiquitinase Leon/USP5 interacts with Atg1/ULK1 and antagonizes autophagy
Yueh-Ling Pai, Yuchieh Jay Lin, Wen-Hsin Peng, Li-Ting Huang, He-Yen Chou, Chien-Hsiang Wang, Cheng-Ting Chien, Guang-Chao Chen
Cell Death Dis. 2023 Aug; 14(8): 540. Published online 2023 Aug 22. doi: 10.1038/s41419-023-06062-x
PMCID:
PMC10444890
AbstractArticlePDF–4.9M
2.
An expanded toolkit for Drosophila gene tagging using synthesized homology donor constructs for CRISPR-mediated homologous recombination
Oguz Kanca, Jonathan Zirin, Yanhui Hu, Burak Tepe, Debdeep Dutta, Wen-Wen Lin, Liwen Ma, Ming Ge, Zhongyuan Zuo, Lu-Ping Liu, Robert W Levis, Norbert Perrimon, Hugo J Bellen
eLife. 2022; 11: e76077. Published online 2022 Jun 20. doi: 10.7554/eLife.76077
PMCID:
PMC9239680
AbstractArticlePDF–1.2M
3.
Usp5, Usp34, and Otu1 deubiquitylases mediate DNA repair in Drosophila melanogaster
Zoltán G. Páhi, Levente Kovács, Diána Szűcs, Barbara N. Borsos, Péter Deák, Tibor Pankotai
Sci Rep. 2022; 12: 5870. Published online 2022 Apr 7. doi: 10.1038/s41598-022-09703-x
PMCID:
PMC8990000
AbstractArticlePDF–1.5M
4.
Drosophila USP22/nonstop polarizes the actin cytoskeleton during collective border cell migration
Hammed Badmos, Neville Cobbe, Amy Campbell, Richard Jackson, Daimark Bennett
J Cell Biol. 2021 Jul 5; 220(7): e202007005. Published online 2021 May 14. doi: 10.1083/jcb.202007005
PMCID:
PMC8129793
AbstractArticlePDF–6.5M
5.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
6.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
7.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
8.
Proapoptotic function of deubiquitinase DUSP31 in Drosophila
Sergey A. Sinenko
Oncotarget. 2017 Sep 19; 8(41): 70452–70462. Published online 2017 Jul 31. doi: 10.18632/oncotarget.19715
PMCID:
PMC5642568
AbstractArticlePDF–6.7M
9.
Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach
Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera
BMC Genomics. 2015; 16(1): 694. Published online 2015 Sep 15. doi: 10.1186/s12864-015-1888-3
PMCID:
PMC4570697
AbstractArticlePDF–2.0M
10.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
11.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
12.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
13.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
14.
Identifying USPs regulating immune signals in Drosophila: USP2 deubiquitinates Imd and promotes its degradation by interacting with the proteasome
Elodie Engel, Perrine Viargues, Magda Mortier, Emmanuel Taillebourg, Yohann Couté, Dominique Thevenon, Marie-Odile Fauvarque
Cell Commun Signal. 2014; 12: 41. Published online 2014 Jul 16. doi: 10.1186/s12964-014-0041-2
PMCID:
PMC4140012
AbstractArticlePDF–2.0M
15.
The deubiquitinating enzyme DUBAI stabilizes DIAP1 to suppress Drosophila apoptosis
C-S Yang, S A Sinenko, M J Thomenius, A C Robeson, C D Freel, S R Horn, S Kornbluth
Cell Death Differ. 2014 Apr; 21(4): 604–611. Published online 2013 Dec 20. doi: 10.1038/cdd.2013.184
PMCID:
PMC3950323
AbstractArticlePDF–1.5M
16.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
17.
A Targeted In Vivo RNAi Screen Reveals Deubiquitinases as New Regulators of Notch Signaling
Junzheng Zhang, Min Liu, Ying Su, Juan Du, Alan Jian Zhu
G3 (Bethesda) 2012 Dec; 2(12): 1563–1575. Published online 2012 Dec 1. doi: 10.1534/g3.112.003780
PMCID:
PMC3516478
AbstractArticlePDF–2.9M
18.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
19.
Drosophila sperm proteome evolution: Insights from comparative genomic approaches
Elaine C. Rettie, Steve Dorus
Spermatogenesis. 2012 Jul 1; 2(3): 213–223. doi: 10.4161/spmg.21748
PMCID:
PMC3469443
AbstractArticlePDF–782K
20.
Systematic Analysis of the Physiological Importance of Deubiquitinating Enzymes
Wei-Ling Tsou, Michael J. Sheedlo, Marie E. Morrow, Jessica R. Blount, Kelly M. McGregor, Chittaranjan Das, Sokol V. Todi
PLoS One. 2012; 7(8): e43112. Published online 2012 Aug 24. doi: 10.1371/journal.pone.0043112
PMCID:
PMC3427330
AbstractArticlePDF–1.4M

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