PMC Links for GEO Profiles (Select 71971136) - PMC

Select item 89061191.

WWP1 upregulation predicts poor prognosis and promotes tumor progression by regulating ubiquitination of NDFIP1 in intrahepatic cholangiocarcinoma

Yongjian Li, Qian Cheng, Jie Gao, Zhuomiaoyu Chen, Jingheng Guo, Zuyin Li, Lingyu Tian, Chao Zhang, Yuzi Li, Jiaxi Zheng, Zhao Li, Jiye Zhu

Cell Death Discov. 2022; 8: 107. Published online 2022 Mar 9. doi: 10.1038/s41420-022-00882-0

PMCID:: PMC8906119

Abstract Article PDF–6.1M

Select item 83529642.

Integrative oncogene-dependency mapping identifies RIT1 vulnerabilities and synergies in lung cancer

Athea Vichas, Amanda K. Riley, Naomi T. Nkinsi, Shriya Kamlapurkar, Phoebe C. R. Parrish, April Lo, Fujiko Duke, Jennifer Chen, Iris Fung, Jacqueline Watson, Matthew Rees, Austin M. Gabel, James D. Thomas, Robert K. Bradley, John K. Lee, Emily M. Hatch, Marina K. Baine, Natasha Rekhtman, Marc Ladanyi, Federica Piccioni, Alice H. Berger

Nat Commun. 2021; 12: 4789. Published online 2021 Aug 9. doi: 10.1038/s41467-021-24841-y

PMCID:: PMC8352964

Abstract Article PDF–4.5M

Select item 81650303.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 74163064.

MZT Proteins Form Multi-Faceted Structural Modules in the γ-Tubulin Ring Complex

Michal Wieczorek, Tzu-Lun Huang, Linas Urnavicius, Kuo-Chiang Hsia, Tarun M. Kapoor

Cell Rep. Author manuscript; available in PMC 2020 Aug 10.

Published in final edited form as: Cell Rep. 2020 Jun 30; 31(13): 107791. doi: 10.1016/j.celrep.2020.107791

PMCID:: PMC7416306

Abstract Article PDF–1.9M

Select item 71699835.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 69812066.

Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS^G13D

Susan A. Kennedy, Mohamed-Ali Jarboui, Sriganesh Srihari, Cinzia Raso, Kenneth Bryan, Layal Dernayka, Theodosia Charitou, Manuel Bernal-Llinares, Carlos Herrera-Montavez, Aleksandar Krstic, David Matallanas, Max Kotlyar, Igor Jurisica, Jasna Curak, Victoria Wong, Igor Stagljar, Thierry LeBihan, Lisa Imrie, Priyanka Pillai, Miriam A. Lynn, Erik Fasterius, Cristina Al-Khalili Szigyarto, James Breen, Christina Kiel, Luis Serrano, Nora Rauch, Oleksii Rukhlenko, Boris N. Kholodenko, Luis F. Iglesias-Martinez, Colm J. Ryan, Ruth Pilkington, Patrizia Cammareri, Owen Sansom, Steven Shave, Manfred Auer, Nicola Horn, Franziska Klose, Marius Ueffing, Karsten Boldt, David J. Lynn, Walter Kolch

Nat Commun. 2020; 11: 499. Published online 2020 Jan 24. doi: 10.1038/s41467-019-14224-9

PMCID:: PMC6981206

Abstract Article PDF–3.7M

Select item 64264557.

Mapping the genetic landscape of human cells

Max A. Horlbeck, Albert Xu, Min Wang, Neal K. Bennett, Chong Y. Park, Derek Bogdanoff, Britt Adamson, Eric D. Chow, Martin Kampmann, Tim R. Peterson, Ken Nakamura, Michael A. Fischbach, Jonathan S. Weissman, Luke A. Gilbert

Cell. Author manuscript; available in PMC 2019 Aug 9.

Published in final edited form as: Cell. 2018 Aug 9; 174(4): 953–967.e22. Published online 2018 Jul 19. doi: 10.1016/j.cell.2018.06.010

PMCID:: PMC6426455

Abstract Article PDF–3.6M

Select item 56548638.

NMR secondary structure and interactions of recombinant human MOZART1 protein, a component of the gamma‐tubulin complex

Cyprian D. Cukier, Audrey Tourdes, Dounia El‐Mazouni, Valérie Guillet, Julian Nomme, Lionel Mourey, Alain Milon, Andreas Merdes, Virginie Gervais

Protein Sci. 2017 Nov; 26(11): 2240–2248. Published online 2017 Sep 27. doi: 10.1002/pro.3282

PMCID:: PMC5654863

Abstract Article PDF–2.2M

Select item 55316119.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 421875110.

Genome-wide Association Study of Obsessive-Compulsive Disorder

S Evelyn Stewart, Dongmei Yu, Jeremiah M Scharf, Benjamin M Neale, Jesen A Fagerness, Carol A Mathews, Paul D Arnold, Patrick D Evans, Eric R Gamazon, Lisa Osiecki, Lauren McGrath, Stephen Haddad, Jacquelyn Crane, Dianne Hezel, Cornelia Illman, Catherine Mayerfeld, Anuar Konkashbaev, Chunyu Liu, Anna Pluzhnikov, Anna Tikhomirov, Christopher K Edlund, Scott L Rauch, Rainald Moessner, Peter Falkai, Wolfgang Maier, Stephan Ruhrmann, Hans-Jörgen Grabe, Leonard Lennertz, Michael Wagner, Laura Bellodi, Maria Cristina Cavallini, Margaret A Richter, Edwin H Cook, Jr, James L Kennedy, David Rosenberg, Dan J Stein, Sian MJ Hemmings, Christine Lochner, Amin Azzam, Denise A Chavira, Eduardo Fournier, Helena Garrido, Brooke Sheppard, Paul Umaña, Dennis L Murphy, Jens R Wendland, Jeremy Veenstra-VanderWeele, Damiaan Denys, Rianne Blom, Dieter Deforce, Filip Van Nieuwerburgh, Herman GM Westenberg, Susanne Walitza, Karin Egberts, Tobias Renner, Euripedes Constantino Miguel, Carolina Cappi, Ana G Hounie, Maria Conceição do Rosário, Aline S Sampaio, Homero Vallada, Humberto Nicolini, Nuria Lanzagorta, Beatriz Camarena, Richard Delorme, Marion Leboyer, Carlos N Pato, Michele T Pato, Emanuel Voyiaziakis, Peter Heutink, Danielle C Cath, Danielle Posthuma, Jan H Smit, Jack Samuels, O Joseph Bienvenu, Bernadette Cullen, Abby J Fyer, Marco A Grados, Benjamin D Greenberg, James T McCracken, Mark A Riddle, Ying Wang, Vladimir Coric, James F Leckman, Michael Bloch, Christopher Pittenger, Valsamma Eapen, Donald W Black, Roel A Ophoff, Eric Strengman, Daniele Cusi, Maurizio Turiel, Francesca Frau, Fabio Macciardi, J Raphael Gibbs, Mark R Cookson, Andrew Singleton, for North American Brain Expression Consortium, John Hardy, for the UK Brain Expression Database, Andrew T Crenshaw, Melissa A Parkin, Daniel B Mirel, David V Conti, Shaun Purcell, Gerald Nestadt, Gregory L Hanna, Michael A Jenike, James A Knowles, Nancy Cox, David L Pauls

Mol Psychiatry. Author manuscript; available in PMC 2014 Nov 3.

Published in final edited form as: Mol Psychiatry. 2013 Jul; 18(7): 788–798. Published online 2012 Aug 14. doi: 10.1038/mp.2012.85

Correction in:: volume 18 on page 843

PMCID:: PMC4218751

Abstract Article PDF–1.8M

Select item 361021411.

A human skeletal muscle interactome centered on proteins involved in muscular dystrophies: LGMD interactome

Gaëlle Blandin, Sylvie Marchand, Karine Charton, Nathalie Danièle, Evelyne Gicquel, Jean-Baptiste Boucheteil, Azéddine Bentaib, Laetitia Barrault, Daniel Stockholm, Marc Bartoli, Isabelle Richard

Skelet Muscle. 2013; 3: 3. Published online 2013 Feb 15. doi: 10.1186/2044-5040-3-3

PMCID:: PMC3610214

Abstract Article PDF–1.7M

Select item 333612812.

The GCP3-Interacting Proteins GIP1 and GIP2 Are Required for γ-Tubulin Complex Protein Localization, Spindle Integrity, and Chromosomal Stability

Natacha Janski, Kinda Masoud, Morgane Batzenschlager, Etienne Herzog, Jean-Luc Evrard, Guy Houlné, Mickael Bourge, Marie-Edith Chabouté, Anne-Catherine Schmit

Plant Cell. 2012 Mar; 24(3): 1171–1187. Published online 2012 Mar 16. doi: 10.1105/tpc.111.094904

PMCID:: PMC3336128

Abstract Article PDF–3.2M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 298946114.

Systematic Characterization of Human Protein Complexes Identifies Chromosome Segregation Proteins

James R.A. Hutchins, Yusuke Toyoda, Björn Hegemann, Ina Poser, Jean-Karim Hériché, Martina M. Sykora, Martina Augsburg, Otto Hudecz, Bettina A. Buschhorn, Jutta Bulkescher, Christian Conrad, David Comartin, Alexander Schleiffer, Mihail Sarov, Andrei Pozniakovsky, Mikolaj Michal Slabicki, Siegfried Schloissnig, Ines Steinmacher, Marit Leuschner, Andrea Ssykor, Steffen Lawo, Laurence Pelletier, Holger Stark, Kim Nasmyth, Jan Ellenberg, Richard Durbin, Frank Buchholz, Karl Mechtler, Anthony A. Hyman, Jan-Michael Peters

Science. Author manuscript; available in PMC 2010 Nov 22.

Published in final edited form as: Science. 2010 Apr 30; 328(5978): 593–599. Published online 2010 Apr 1. doi: 10.1126/science.1181348

PMCID:: PMC2989461

Abstract Article PDF–2.2M

Select item 13924115.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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