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Select item 81650301.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 78268492.

Meta-Analysis of Mutations in ALOX12B or ALOXE3 Identified in a Large Cohort of 224 Patients

Alrun Hotz, Julia Kopp, Emmanuelle Bourrat, Vinzenz Oji, Katalin Komlosi, Kathrin Giehl, Bakar Bouadjar, Anette Bygum, Iliana Tantcheva-Poor, Maritta Hellström Pigg, Cristina Has, Zhou Yang, Alan D. Irvine, Regina C. Betz, Giovanna Zambruno, Gianluca Tadini, Kira Süßmuth, Robert Gruber, Matthias Schmuth, Juliette Mazereeuw-Hautier, Natalie Jonca, Sophie Guez, Michela Brena, Angela Hernandez-Martin, Peter van den Akker, Maria C. Bolling, Katariina Hannula-Jouppi, Andreas D. Zimmer, Svenja Alter, Anders Vahlquist, Judith Fischer

Genes (Basel) 2021 Jan; 12(1): 80. Published online 2021 Jan 9. doi: 10.3390/genes12010080

PMCID:: PMC7826849

Abstract Article PDF–3.2M

Select item 71699833.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 63465084.

The associations of DNA methylation alterations in oxidative stress-related genes with cancer incidence and mortality outcomes: a population-based cohort study

Xīn Gào, Yan Zhang, Barbara Burwinkel, Yang Xuan, Bernd Holleczek, Hermann Brenner, Ben Schöttker

Clin Epigenetics. 2019; 11: 14. Published online 2019 Jan 24. doi: 10.1186/s13148-018-0604-y

PMCID:: PMC6346508

Abstract Article PDF–571K

Select item 63211855.

High Throughput Chemical Screening Reveals Multiple Regulatory Proteins on FOXA1 in Breast Cancer Cell Lines

Shixiong Wang, Sachin Kumar Singh, Madhumohan R. Katika, Sandra Lopez-Aviles, Antoni Hurtado

Int J Mol Sci. 2018 Dec; 19(12): 4123. Published online 2018 Dec 19. doi: 10.3390/ijms19124123

PMCID:: PMC6321185

Abstract Article PDF–2.8M

Select item 63096656.

Identification and association of recurrent ALOXE3 mutation with non-bullous congenital ichthyosiform erythroderma in two ethnically distinct Pakistani families

Simeen Ber Rahman, Asif Mir, Nafees Ahmad, Syed Husnain Haider, Salman Akbar Malik, Muhammad Nasir

Congenit Anom (Kyoto) Author manuscript; available in PMC 2020 May 1.

Published in final edited form as: Congenit Anom (Kyoto). 2019 May; 59(3): 93–98. Published online 2018 Jul 18. doi: 10.1111/cga.12303

PMCID:: PMC6309665

Abstract Article PDF–692K

Select item 62135697.

Characterization of Epidermal Lipoxygenase Expression in Normal Human Skin and Tissue-Engineered Skin Substitutes

Carolyne Simard-Bisson, Lorraine Andrée Parent, Véronique J. Moulin, Bernard Fruteau de Laclos

J Histochem Cytochem. 2018 Nov; 66(11): 813–824. Published online 2018 Jul 9. doi: 10.1369/0022155418788117

PMCID:: PMC6213569

Abstract Article PDF–1.1M

Select item 58391588.

Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells

Giorgio Giurato, Giovanni Nassa, Annamaria Salvati, Elena Alexandrova, Francesca Rizzo, Tuula A. Nyman, Alessandro Weisz, Roberta Tarallo

Sci Data. 2018; 5: 180031. Published online 2018 Mar 6. doi: 10.1038/sdata.2018.31

PMCID:: PMC5839158

Abstract Article PDF–1.9M

Select item 55316119.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 509026010.

Novel mutations in the genes TGM1 and ALOXE3 underlying autosomal recessive congenital ichthyosis

Rahim Ullah, Muhammad Ansar, Zaka Ullah Durrani, Kwanghyuk Lee, Regie Lyn P. Santos-Cortez, Dost Muhammad, Mahboob Ali, Muhammad Zia, Muhammad Ayub, Suliman Khan, Josh D. Smith, Deborah A. Nickerson, Jay Shendure, Michael Bamshad, Suzanne M. Leal, Wasim Ahmad

Int J Dermatol. Author manuscript; available in PMC 2016 Nov 2.

Published in final edited form as: Int J Dermatol. 2016 May; 55(5): 524–530. Published online 2015 Nov 17. doi: 10.1111/ijd.12950

PMCID:: PMC5090260

Abstract Article PDF–1.0M

Select item 461721111.

The BioPlex Network: A Systematic Exploration of the Human Interactome

Edward L. Huttlin, Lily Ting, Raphael J. Bruckner, Fana Gebreab, Melanie P. Gygi, John Szpyt, Stanley Tam, Gabriela Zarraga, Greg Colby, Kurt Baltier, Rui Dong, Virginia Guarani, Laura Pontano Vaites, Alban Ordureau, Ramin Rad, Brian K. Erickson, Martin Wühr, Joel Chick, Bo Zhai, Deepak Kolippakkam, Julian Mintseris, Robert A. Obar, Tim Harris, Spyros Artavanis-Tsakonas, Mathew E. Sowa, Pietro DeCamilli, Joao A. Paulo, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2016 Jul 16.

Published in final edited form as: Cell. 2015 Jul 16; 162(2): 425–440. doi: 10.1016/j.cell.2015.06.043

PMCID:: PMC4617211

Abstract Article PDF–2.2M

Select item 411632512.

The importance of the lipoxygenase-hepoxilin pathway in the mammalian epidermal barrier

Agustí Muñoz-Garcia, Christopher P. Thomas, Diane S. Keeney, Yuxiang Zheng, Alan R. Brash

Biochim Biophys Acta. Author manuscript; available in PMC 2015 Mar 1.

Published in final edited form as: Biochim Biophys Acta. 2014 Mar; 1841(3): 401–408. Published online 2013 Sep 7. doi: 10.1016/j.bbalip.2013.08.020

PMCID:: PMC4116325

Abstract Article PDF–1.2M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 316916714.

Risk of Meningioma and Common Variation in Genes related to Innate Immunity

Preetha Rajaraman, Alina V. Brenner, Gila Neta, Ruth Pfeiffer, Sophia S. Wang, Meredith Yeager, Gilles Thomas, Howard A. Fine, Martha S. Linet, Nathaniel Rothman, Stephen J. Chanock, Peter D. Inskip

Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2011 Sep 7.

Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2010 May; 19(5): 1356–1361. Published online 2010 Apr 20. doi: 10.1158/1055-9965.EPI-09-1151

PMCID:: PMC3169167

Abstract Article PDF–61K

Select item 312918615.

Lipoxygenases Mediate the Effect of Essential Fatty Acid in Skin Barrier Formation: A PROPOSED ROLE IN RELEASING OMEGA-HYDROXYCERAMIDE FOR CONSTRUCTION OF THE CORNEOCYTE LIPID ENVELOPE

Yuxiang Zheng, Huiyong Yin, William E. Boeglin, Peter M. Elias, Debra Crumrine, David R. Beier, Alan R. Brash

J Biol Chem. 2011 Jul 8; 286(27): 24046–24056. Published online 2011 May 10. doi: 10.1074/jbc.M111.251496

PMCID:: PMC3129186

Abstract Article PDF–2.0M

Select item 300096916.

On the Role of Molecular Oxygen in Lipoxygenase Activation: COMPARISON AND CONTRAST OF EPIDERMAL LIPOXYGENASE-3 WITH SOYBEAN LIPOXYGENASE-1

Yuxiang Zheng, Alan R. Brash

J Biol Chem. 2010 Dec 17; 285(51): 39876–39887. Published online 2010 Oct 5. doi: 10.1074/jbc.M110.180794

PMCID:: PMC3000969

Abstract Article PDF–2.0M

Select item 300096817.

Dioxygenase Activity of Epidermal Lipoxygenase-3 Unveiled: TYPICAL AND ATYPICAL FEATURES OF ITS CATALYTIC ACTIVITY WITH NATURAL AND SYNTHETIC POLYUNSATURATED FATTY ACIDS

Yuxiang Zheng, Alan R. Brash

J Biol Chem. 2010 Dec 17; 285(51): 39866–39875. Published online 2010 Oct 4. doi: 10.1074/jbc.M110.155374

PMCID:: PMC3000968

Abstract Article PDF–2.4M

Select item 296777018.

Polymorphisms in innate immunity genes and risk of childhood leukemia

Sohee Han, Qing Lan, Ae Kyung Park, Kyoung-Mu Lee, Sue K. Park, Hyo Seop Ahn, Hee Young Shin, Hyoung Jin Kang, Hong Hoe Koo, Jong Jin Seo, Ji Eun Choi, Yoon-Ok Ahn, Stephen J. Chanock, Ho Kim, Nathaniel Rothman, Daehee Kang

Hum Immunol. Author manuscript; available in PMC 2010 Nov 2.

Published in final edited form as: Hum Immunol. 2010 Jul; 71(7): 727–730. Published online 2010 May 16. doi: 10.1016/j.humimm.2010.04.004

PMCID:: PMC2967770

Abstract Article PDF–306K

Select item 277172319.

Common Variation in Genes Related to Innate Immunity and Risk of Adult Glioma

Preetha Rajaraman, Alina V. Brenner, Mary Ann Butler, Sophia S. Wang, Ruth M. Pfeiffer, Avima M. Ruder, Martha S. Linet, Meredith Yeager, Zhaoming Wang, Nick Orr, Howard A. Fine, Deukwoo Kwon, Gilles Thomas, Nathaniel Rothman, Peter D. Inskip, Stephen J. Chanock

Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2010 May 1.

Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2009 May; 18(5): 1651–1658. doi: 10.1158/1055-9965.EPI-08-1041

PMCID:: PMC2771723

Abstract Article PDF–392K

Select item 266429920.

Polymorphism in the IL18 gene and epithelial ovarian cancer in non-Hispanic white women

Rachel T. Palmieri, Melanie A. Wilson, Edwin S. Iversen, Merlise A. Clyde, Brian Calingaert, Patricia G. Moorman, Charles Poole, A. Rebecca Anderson, Stephanie Anderson, Hoda Anton-Culver, Australian Cancer Study (Ovarian Cancer Group), Australian Ovarian Cancer Study Group, Jonathan Beesley, Estrid Hogdall, Wendy Brewster, Michael E. Carney, Xiaoqing Chen, Georgia Chenevix-Trench, Jenny Chang-Claude, Julie M. Cunningham, Richard A. DiCioccio, Jennifer A. Doherty, Douglas F. Easton, Christopher K. Edlund, Simon A. Gayther, Aleksandra Gentry-Maharaj, Ellen L. Goode, Marc T. Goodman, Susanne Kruger Kjaer, Claus K Hogdall, Michael P. Hopkins, Eric L. Jenison, Jan Blaakaer, Galina Lurie, Valerie McGuire, Usha Menon, Kirsten B. Moysich, Roberta B. Ness, Celeste Leigh Pearce, Paul D.P. Pharoah, Malcolm C. Pike, Susan J. Ramus, Mary Anne Rossing, Honglin Song, Keith Y. Terada, David Van Den Berg, Robert A. Vierkant, Shan Wang-Gohrke, Penelope M. Webb, Alice S. Whittemore, Anna H. Wu, Argyrios Ziogas, Andrew Berchuck, Joellen M. Schildkraut

Cancer Epidemiol Biomarkers Prev. Author manuscript; available in PMC 2009 Dec 1.

Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2008 Dec; 17(12): 3567–3572. doi: 10.1158/1055-9965.EPI-08-0548