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Select item 95403451.

The in vivo Interaction Landscape of Histones H3.1 and H3.3

Robert Siddaway, Scott Milos, Étienne Coyaud, Hwa Young Yun, Shahir M. Morcos, Sanja Pajovic, Eric I. Campos, Brian Raught, Cynthia Hawkins

Mol Cell Proteomics. 2022 Oct; 21(10): 100411. Published online 2022 Sep 9. doi: 10.1016/j.mcpro.2022.100411

PMCID:: PMC9540345

Abstract Article PDF–3.9M

Select item 88288952.

Human transcription factor protein interaction networks

Helka Göös, Matias Kinnunen, Kari Salokas, Zenglai Tan, Xiaonan Liu, Leena Yadav, Qin Zhang, Gong-Hong Wei, Markku Varjosalo

Nat Commun. 2022; 13: 766. Published online 2022 Feb 9. doi: 10.1038/s41467-022-28341-5

PMCID:: PMC8828895

Abstract Article PDF–1.7M

Select item 81650303.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 75821664.

Fisetin inhibits proliferation of pancreatic adenocarcinoma by inducing DNA damage via RFXAP/KDM4A-dependent histone H3K36 demethylation

Guoping Ding, Xiaodong Xu, Dan Li, Yuhao Chen, Weimin Wang, Dongnan Ping, Shengnan Jia, Liping Cao

Cell Death Dis. 2020 Oct; 11(10): 893. Published online 2020 Oct 22. doi: 10.1038/s41419-020-03019-2

PMCID:: PMC7582166

Abstract Article PDF–3.3M

Select item 64200975.

H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination in sister chromatids

Kyosuke Nakamura, Giulia Saredi, Jordan R. Becker, Benjamin M. Foster, Nhuong V. Nguyen, Tracey Beyer, Laura C. Cesa, Peter A. Faull, Saulius Lukauskas, Thomas Frimurer, J. Ross Chapman, Till Bartke, Anja Groth

Nat Cell Biol. Author manuscript; available in PMC 2019 Aug 25.

Published in final edited form as: Nat Cell Biol. 2019 Mar; 21(3): 311–318. Published online 2019 Feb 25. doi: 10.1038/s41556-019-0282-9

PMCID:: PMC6420097

Article PDF–1.7M

Select item 61666826.

Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei

Domenico Fasci, Hugo van Ingen, Richard A. Scheltema, Albert J. R. Heck

Mol Cell Proteomics. 2018 Oct; 17(10): 2018–2033. Published online 2018 Jul 18. doi: 10.1074/mcp.RA118.000924

PMCID:: PMC6166682

Abstract Article PDF–3.8M

Select item 58648327.

An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations

Xiaonan Liu, Kari Salokas, Fitsum Tamene, Yaming Jiu, Rigbe G. Weldatsadik, Tiina Öhman, Markku Varjosalo

Nat Commun. 2018; 9: 1188. Published online 2018 Mar 22. doi: 10.1038/s41467-018-03523-2

PMCID:: PMC5864832

Abstract Article PDF–4.5M

Select item 55316118.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 55285849.

Whole genome RNAi screens reveal a critical role of REV3 in coping with replication stress

Ilya N. Kotov, Ellen Siebring-van Olst, Philip A. Knobel, Ida H. van der Meulen-Muileman, Emanuela Felley-Bosco, Victor W. van Beusechem, Egbert F. Smit, Rolf A. Stahel, Thomas M. Marti

Mol Oncol. 2014 Dec; 8(8): 1747–1759. Published online 2014 Jul 22. doi: 10.1016/j.molonc.2014.07.008

PMCID:: PMC5528584

Abstract Article PDF–1.0M

Select item 474576910.

Pancreatic cancer-derived exosomes transfer miRNAs to dendritic cells and inhibit RFXAP expression via miR-212-3p

Guoping Ding, Liangjing Zhou, Yingming Qian, Mingnian Fu, Jian Chen, Jionghuang Chen, Jianyang Xiang, Zhengrong Wu, Guixing Jiang, Liping Cao

Oncotarget. 2015 Oct 6; 6(30): 29877–29888. Published online 2015 Aug 14. doi: 10.18632/oncotarget.4924

PMCID:: PMC4745769

Abstract Article PDF–8.7M

Select item 347780411.

A Census of Human Soluble Protein Complexes

Pierre C. Havugimana, G. Traver Hart, Tamás Nepusz, Haixuan Yang, Andrei L. Turinsky, Zhihua Li, Peggy I. Wang, Daniel R. Boutz, Vincent Fong, Sadhna Phanse, Mohan Babu, Stephanie A. Craig, Pingzhao Hu, Cuihong Wan, James Vlasblom, Vaqaarun-Nisa Dar, Alexander Bezginov, Gregory W. Clark, Gabriel C. Wu, Shoshana J. Wodak, Elisabeth R.M. Tillier, Alberto Paccanaro, Edward M. Marcotte, Andrew Emili

Cell. Author manuscript; available in PMC 2013 Aug 31.

Published in final edited form as: Cell. 2012 Aug 31; 150(5): 1068–1081. doi: 10.1016/j.cell.2012.08.011

PMCID:: PMC3477804

Abstract Article PDF–7.7M

Select item 326170812.

Toward an understanding of the protein interaction network of the human liver

Jian Wang, Keke Huo, Lixin Ma, Liujun Tang, Dong Li, Xiaobi Huang, Yanzhi Yuan, Chunhua Li, Wei Wang, Wei Guan, Hui Chen, Chaozhi Jin, Junchen Wei, Wanqiao Zhang, Yongsheng Yang, Qiongming Liu, Ying Zhou, Cuili Zhang, Zhihao Wu, Wangxiang Xu, Ying Zhang, Tao Liu, Donghui Yu, Yaping Zhang, Liang Chen, Dewu Zhu, Xing Zhong, Lixin Kang, Xiang Gan, Xiaolan Yu, Qi Ma, Jing Yan, Li Zhou, Zhongyang Liu, Yunping Zhu, Tao Zhou, Fuchu He, Xiaoming Yang

Mol Syst Biol. 2011; 7: 536. Published online 2011 Oct 11. doi: 10.1038/msb.2011.67

Correction in:: Mol Syst Biol. 2017 Dec; 13(12): 965.

PMCID:: PMC3261708

Abstract Article PDF–2.0M

Select item 317805913.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 294952714.

Solution structure of the heterotrimeric complex between the interaction domains of RFX5 and RFXAP from the RFX gene regulatory complex

Kholiswa M. Laird, LaTese L. Briggs, Jeremy M. Boss, Michael F. Summers, Colin W. Garvie

J Mol Biol. Author manuscript; available in PMC 2011 Oct 15.

Published in final edited form as: J Mol Biol. 2010 Oct 15; 403(1): 40–51. Published online 2010 Aug 21. doi: 10.1016/j.jmb.2010.08.025

PMCID:: PMC2949527

Abstract Article PDF–1.3M

Select item 270085515.

Formation of the RFX gene regulatory complex induces folding of RFXAP

LaTese Briggs, Kholiswa Laird, Jeremy M. Boss, Colin W. Garvie

Proteins. Author manuscript; available in PMC 2010 Aug 15.

Published in final edited form as: Proteins. 2009 Aug 15; 76(3): 655–664. doi: 10.1002/prot.22379

PMCID:: PMC2700855

Abstract Article PDF–429K

Select item 116970416.

RFXAP, a novel subunit of the RFX DNA binding complex is mutated in MHC class II deficiency.

B Durand, P Sperisen, P Emery, E Barras, M Zufferey, B Mach, W Reith

EMBO J. 1997 Mar 3; 16(5): 1045–1055. doi: 10.1093/emboj/16.5.1045

PMCID:: PMC1169704

Summary PDF–700K

Select item 13924117.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 13574818.

NotI flanking sequences: a tool for gene discovery and verification of the human genome

Alexey S. Kutsenko, Rinat Z. Gizatullin, Ali N. Al-Amin, Fuli Wang, Sergei M. Kvasha, Raf M. Podowski, Yuri G. Matushkin, Anita Gyanchandani, Olga V. Muravenko, Viktor G. Levitsky, Nikolay A. Kolchanov, Alexei I. Protopopov, Vladimir I. Kashuba, Lev L. Kisselev, Wyeth Wasserman, Claes Wahlestedt, Eugene R. Zabarovsky

Nucleic Acids Res. 2002 Jul 15; 30(14): 3163–3170. doi: 10.1093/nar/gkf428

PMCID:: PMC135748

Abstract Article PDF–373K

Select item 8727819.

Analysis of Ankyrin Repeats Reveals How a Single Point Mutation in RFXANK Results in Bare Lymphocyte Syndrome

Nada Nekrep, Matthias Geyer, Nabila Jabrane-Ferrat, B. Matija Peterlin

Mol Cell Biol. 2001 Aug; 21(16): 5566–5576. doi: 10.1128/MCB.21.16.5566-5576.2001

PMCID:: PMC87278

Abstract Article PDF–1.0M

Select item 8614120.

Associations and Interactions between Bare Lymphocyte Syndrome Factors

Angela M. DeSandro, Uma M. Nagarajan, Jeremy M. Boss

Mol Cell Biol. 2000 Sep; 20(17): 6587–6599. doi: 10.1128/mcb.20.17.6587-6599.2000

PMCID:: PMC86141

Abstract Article PDF–2.6M

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