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Items: 19

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
RPA resolves conflicting activities of accessory proteins during reconstitution of Dmc1-mediated meiotic recombination
Yuen-Ling Chan, Annie Zhang, Benjamin P Weissman, Douglas K Bishop
Nucleic Acids Res. 2019 Jan 25; 47(2): 747–761. Published online 2018 Nov 20. doi: 10.1093/nar/gky1160
PMCID:
PMC6344864
AbstractArticlePDF–3.5M
3.
Dynamic interactions of the homologous pairing 2 (Hop2)–meiotic nuclear divisions 1 (Mnd1) protein complex with meiotic presynaptic filaments in budding yeast
J. Brooks Crickard, Youngho Kwon, Patrick Sung, Eric C. Greene
J Biol Chem. 2019 Jan 11; 294(2): 490–501. Published online 2018 Nov 12. doi: 10.1074/jbc.RA118.006146
Correction in:
J Biol Chem. 2024 May; 300(5): 107298.
PMCID:
PMC6333877
AbstractArticlePDF–1.9M
4.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
5.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
6.
Identification of karyopherins involved in the nuclear import of RNA exosome subunit Rrp6 in Saccharomyces cerevisiae
Fernando A. Gonzales-Zubiate, Ellen K. Okuda, Julia P. C. Da Cunha, Carla Columbano Oliveira
J Biol Chem. 2017 Jul 21; 292(29): 12267–12284. Published online 2017 May 24. doi: 10.1074/jbc.M116.772376
PMCID:
PMC5519375
AbstractArticlePDF–3.2M
7.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
8.
Small Rad51 and Dmc1 Complexes Often Co-occupy Both Ends of a Meiotic DNA Double Strand Break
M. Scott Brown, Jennifer Grubb, Annie Zhang, Michael J. Rust, Douglas K. Bishop
PLoS Genet. 2015 Dec; 11(12): e1005653. Published online 2015 Dec 31. doi: 10.1371/journal.pgen.1005653
PMCID:
PMC4697796
AbstractArticlePDF–4.5M
9.
Crystal structure of Hop2–Mnd1 and mechanistic insights into its role in meiotic recombination
Hyun-Ah Kang, Ho-Chul Shin, Alexandra-Styliani Kalantzi, Christopher P. Toseland, Hyun-Min Kim, Stephan Gruber, Matteo Dal Peraro, Byung-Ha Oh
Nucleic Acids Res. 2015 Apr 20; 43(7): 3841–3856. Published online 2015 Mar 3. doi: 10.1093/nar/gkv172
PMCID:
PMC4402518
AbstractArticlePDF–13M
10.
The Third Exon of the Budding Yeast Meiotic Recombination Gene HOP2 Is Required for Calcium-dependent and Recombinase Dmc1-specific Stimulation of Homologous Strand Assimilation
Yuen-Ling Chan, M. Scott Brown, Daoming Qin, Naofumi Handa, Douglas K. Bishop
J Biol Chem. 2014 Jun 27; 289(26): 18076–18086. Published online 2014 May 5. doi: 10.1074/jbc.M114.558601
PMCID:
PMC4140259
AbstractArticlePDF–1.4M
11.
A Visual Screen of Protein Localization during Sporulation Identifies New Components of Prospore Membrane-Associated Complexes in Budding Yeast
Chien Lam, Ethan Santore, Elizabeth Lavoie, Leor Needleman, Nicholas Fiacco, Carey Kim, Aaron M. Neiman
Eukaryot Cell. 2014 Mar; 13(3): 383–391. doi: 10.1128/EC.00333-13
PMCID:
PMC3957589
AbstractArticlePDF–1.3M
12.
Meiotic Crossover Control by Concerted Action of Rad51-Dmc1 in Homolog Template Bias and Robust Homeostatic Regulation
Jessica P. Lao, Veronica Cloud, Chu-Chun Huang, Jennifer Grubb, Drew Thacker, Chih-Ying Lee, Michael E. Dresser, Neil Hunter, Douglas K. Bishop
PLoS Genet. 2013 Dec; 9(12): e1003978. Published online 2013 Dec 19. doi: 10.1371/journal.pgen.1003978
PMCID:
PMC3868528
AbstractArticlePDF–7.9M
13.
Integration of a splicing regulatory network within the meiotic gene expression program of Saccharomyces cerevisiae
Elizabeth M. Munding, A. Haller Igel, Lily Shiue, Kristel M. Dorighi, Lisa R. Treviño, Manuel Ares, Jr
Genes Dev. 2010 Dec 1; 24(23): 2693–2704. doi: 10.1101/gad.1977410
PMCID:
PMC2994042
AbstractArticlePDF–895K
14.
Bipartite stimulatory action of the Hop2–Mnd1 complex on the Rad51 recombinase
Peter Chi, Joseph San Filippo, Michael G. Sehorn, Galina V. Petukhova, Patrick Sung
Genes Dev. 2007 Jul 15; 21(14): 1747–1757. doi: 10.1101/gad.1563007
PMCID:
PMC1920169
AbstractArticlePDF–577K
15.
Mnd1/Hop2 Facilitates Dmc1-Dependent Interhomolog Crossover Formation in Meiosis of Budding Yeast
Jill M. Henry, Raymond Camahort, Douglas A. Rice, Laurence Florens, Selene K. Swanson, Michael P. Washburn, Jennifer L. Gerton
Mol Cell Biol. 2006 Apr; 26(8): 2913–2923. doi: 10.1128/MCB.26.8.2913-2923.2006
PMCID:
PMC1446936
AbstractArticlePDF–567K
16.
Morphogenetic Pathway of Spore Wall Assembly in Saccharomyces cerevisiae
Alison Coluccio, Edith Bogengruber, Michael N. Conrad, Michael E. Dresser, Peter Briza, Aaron M. Neiman
Eukaryot Cell. 2004 Dec; 3(6): 1464–1475. doi: 10.1128/EC.3.6.1464-1475.2004
PMCID:
PMC539034
AbstractArticlePDF–610K
17.
Heterodimeric complexes of Hop2 and Mnd1 function with Dmc1 to promote meiotic homolog juxtaposition and strand assimilation
Yi-Kai Chen, Chih-Hsiang Leng, Heidi Olivares, Ming-Hui Lee, Yuan-Chih Chang, Wen-Mei Kung, Shih-Chieh Ti, Yu-Hui Lo, Andrew H.-J. Wang, Chia-Seng Chang, Douglas K. Bishop, Yi-Ping Hsueh, Ting-Fang Wang
Proc Natl Acad Sci U S A. 2004 Jul 20; 101(29): 10572–10577. Published online 2004 Jul 12. doi: 10.1073/pnas.0404195101
PMCID:
PMC490024
AbstractArticlePDF–438K
18.
The Mnd1 Protein Forms a Complex with Hop2 To Promote Homologous Chromosome Pairing and Meiotic Double-Strand Break Repair
Hideo Tsubouchi, G. Shirleen Roeder
Mol Cell Biol. 2002 May; 22(9): 3078–3088. doi: 10.1128/MCB.22.9.3078-3088.2002
PMCID:
PMC133769
AbstractArticlePDF–759K
19.
Mnd1p: An evolutionarily conserved protein required for meiotic recombination
Jennifer L. Gerton, Joseph L. DeRisi
Proc Natl Acad Sci U S A. 2002 May 14; 99(10): 6895–6900. doi: 10.1073/pnas.102167899
PMCID:
PMC124500
AbstractArticlePDF–452K

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