PMC Links for GEO Profiles (Select 83080711) - PMC

Select item 105658761.

Pulse-SILAC and Interactomics Reveal Distinct DDB1-CUL4–Associated Factors, Cellular Functions, and Protein Substrates

Jennifer Raisch, Marie-Line Dubois, Marika Groleau, Dominique Lévesque, Thomas Burger, Carla-Marie Jurkovic, Romain Brailly, Gwendoline Marbach, Alyson McKenna, Catherine Barrette, Pierre-Étienne Jacques, François-Michel Boisvert

Mol Cell Proteomics. 2023 Oct; 22(10): 100644. Published online 2023 Sep 7. doi: 10.1016/j.mcpro.2023.100644

PMCID:: PMC10565876

Abstract Article PDF–3.7M

Select item 89312322.

The UVSSA protein is part of a genome integrity homeostasis network with links to transcription-coupled DNA repair and ATM signaling

Magdalena M. Kordon, Sarah Arron, James E. Cleaver, Vladimir Bezrookove, Deneb Karentz, Brian Lu, Eli Perr, Darwin Chang, Thoru Pederson

Proc Natl Acad Sci U S A. 2022 Mar 15; 119(11): e2116254119. Published online 2022 Mar 7. doi: 10.1073/pnas.2116254119

PMCID:: PMC8931232

Abstract Article PDF–1.4M

Select item 88907693.

ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation

Yana van der Weegen, Klaas de Lint, Diana van den Heuvel, Yuka Nakazawa, Tycho E.T. Mevissen, Janne J.M. van Schie, Marta San Martin Alonso, Daphne E.C. Boer, Román González-Prieto, Ishwarya V. Narayanan, Noud H.M. Klaassen, Annelotte P. Wondergem, Khashayar Roohollahi, Josephine C. Dorsman, Yuichiro Hara, Alfred C.O. Vertegaal, Job de Lange, Johannes C. Walter, Sylvie M. Noordermeer, Mats Ljungman, Tomoo Ogi, Rob M.F. Wolthuis, Martijn S. Luijsterburg

Nat Cell Biol. Author manuscript; available in PMC 2022 Jun 9.

Published in final edited form as: Nat Cell Biol. 2021 Jun; 23(6): 595–607. Published online 2021 Jun 9. doi: 10.1038/s41556-021-00688-9

PMCID:: PMC8890769

Abstract Article PDF–7.4M

Select item 85143384.

Structural basis of human transcription–DNA repair coupling

Goran Kokic, Felix R. Wagner, Aleksandar Chernev, Henning Urlaub, Patrick Cramer

Nature. 2021; 598(7880): 368–372. Published online 2021 Sep 15. doi: 10.1038/s41586-021-03906-4

PMCID:: PMC8514338

Abstract Article PDF–17M

Select item 77913425.

The UVSSA complex alleviates MYC-driven transcription stress

Mai Sato, Rowyn C. Liebau, Zhaoqi Liu, Lizhi Liu, Raul Rabadan, Jean Gautier

J Cell Biol. 2021 Feb 1; 220(2): e201807163. Published online 2021 Jan 6. doi: 10.1083/jcb.201807163

Correction in:: J Cell Biol. 2023 Mar 6; 222(3): e20180716302092023c.

PMCID:: PMC7791342

Abstract Article PDF–5.2M

Select item 71929106.

The cooperative action of CSB, CSA, and UVSSA target TFIIH to DNA damage-stalled RNA polymerase II

Yana van der Weegen, Hadar Golan-Berman, Tycho E. T. Mevissen, Katja Apelt, Román González-Prieto, Joachim Goedhart, Elisheva E. Heilbrun, Alfred C. O. Vertegaal, Diana van den Heuvel, Johannes C. Walter, Sheera Adar, Martijn S. Luijsterburg

Nat Commun. 2020; 11: 2104. Published online 2020 Apr 30. doi: 10.1038/s41467-020-15903-8

Correction in:: Nat Commun. 2020; 11: 5734.

PMCID:: PMC7192910

Abstract Article PDF–4.5M

Select item 71699837.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 69277318.

USP7-mediated deubiquitination differentially regulates CSB but not UVSSA upon UV radiation-induced DNA damage

Qianzheng Zhu, Nan Ding, Shengcai Wei, Ping Li, Gulzar Wani, Jinshan He, Altaf A. Wani

Cell Cycle. 2020; 19(1): 124–141. Published online 2019 Nov 27. doi: 10.1080/15384101.2019.1695996

PMCID:: PMC6927731

Abstract Article PDF–4.3M

Select item 64865479.

FACT subunit Spt16 controls UVSSA recruitment to lesion-stalled RNA Pol II and stimulates TC-NER

Franziska Wienholz, Di Zhou, Yasemin Turkyilmaz, Petra Schwertman, Maria Tresini, Alex Pines, Marvin van Toorn, Karel Bezstarosti, Jeroen A A Demmers, Jurgen A Marteijn

Nucleic Acids Res. 2019 May 7; 47(8): 4011–4025. Published online 2019 Feb 4. doi: 10.1093/nar/gkz055

PMCID:: PMC6486547

Abstract Article PDF–2.8M

Select item 584754110.

TRiC controls transcription resumption after UV damage by regulating Cockayne syndrome protein A

Alex Pines, Madelon Dijk, Matthew Makowski, Elisabeth M. Meulenbroek, Mischa G. Vrouwe, Yana van der Weegen, Marijke Baltissen, Pim J. French, Martin E. van Royen, Martijn S. Luijsterburg, Leon H. Mullenders, Michiel Vermeulen, Wim Vermeulen, Navraj S. Pannu, Haico van Attikum

Nat Commun. 2018; 9: 1040. Published online 2018 Mar 12. doi: 10.1038/s41467-018-03484-6

PMCID:: PMC5847541

Abstract Article PDF–4.7M

Select item 572743811.

Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways

Masahiko Okuda, Yuka Nakazawa, Chaowan Guo, Tomoo Ogi, Yoshifumi Nishimura

Nucleic Acids Res. 2017 Dec 15; 45(22): 13043–13055. Published online 2017 Oct 24. doi: 10.1093/nar/gkx970

PMCID:: PMC5727438

Abstract Article PDF–10M

Select item 549522512.

Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing

Teng Fei, Yiwen Chen, Tengfei Xiao, Wei Li, Laura Cato, Peng Zhang, Maura B. Cotter, Michaela Bowden, Rosina T. Lis, Shuang G. Zhao, Qiu Wu, Felix Y. Feng, Massimo Loda, Housheng Hansen He, X. Shirley Liu, Myles Brown

Proc Natl Acad Sci U S A. 2017 Jun 27; 114(26): E5207–E5215. Published online 2017 Jun 13. doi: 10.1073/pnas.1617467114

PMCID:: PMC5495225

Abstract Article PDF–1.3M

Select item 491945913.

Stabilization of Ultraviolet (UV)-stimulated Scaffold Protein A by Interaction with Ubiquitin-specific Peptidase 7 Is Essential for Transcription-coupled Nucleotide Excision Repair

Mitsuru Higa, Xue Zhang, Kiyoji Tanaka, Masafumi Saijo

J Biol Chem. 2016 Jun 24; 291(26): 13771–13779. Published online 2016 Apr 28. doi: 10.1074/jbc.M116.724658

PMCID:: PMC4919459

Abstract Article PDF–1.5M

Select item 464794114.

hORFeome v3.1: A resource of human open reading frames representing over 10,000 human genes

Philippe Lamesch, Ning Li, Stuart Milstein, Changyu Fan, Tong Hao, Gabor Szabo, Zhenjun Hu, Kavitha Venkatesan, Graeme Bethel, Paul Martin, Jane Rogers, Stephanie Lawlor, Stuart McLaren, Amélie Dricot, Heather Borick, Michael E. Cusick, Jean Vandenhaute, Ian Dunham, David E. Hill, Marc Vidal

Genomics. 2007 Mar; 89(3): 307–315. doi: 10.1016/j.ygeno.2006.11.012

PMCID:: PMC4647941

Abstract Article

Select item 371455915.

UVSSA and USP7, a new couple in transcription-coupled DNA repair

Petra Schwertman, Wim Vermeulen, Jurgen A Marteijn

Chromosoma. 2013; 122(4): 275–284. Published online 2013 Jun 13. doi: 10.1007/s00412-013-0420-2

PMCID:: PMC3714559

Abstract Article PDF–466K

Select item 347171016.

KIAA1530 Protein Is Recruited by Cockayne Syndrome Complementation Group Protein A (CSA) to Participate in Transcription-coupled Repair (TCR)

Jia Fei, Junjie Chen

J Biol Chem. 2012 Oct 12; 287(42): 35118–35126. Published online 2012 Aug 17. doi: 10.1074/jbc.M112.398131

PMCID:: PMC3471710

Abstract Article PDF–1.5M

Select item 340884717.

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

Orit Rozenblatt-Rosen, Rahul C. Deo, Megha Padi, Guillaume Adelmant, Michael A. Calderwood, Thomas Rolland, Miranda Grace, Amélie Dricot, Manor Askenazi, Maria Tavares, Sam Pevzner, Fieda Abderazzaq, Danielle Byrdsong, Anne-Ruxandra Carvunis, Alyce A. Chen, Jingwei Cheng, Mick Correll, Melissa Duarte, Changyu Fan, Mariet C. Feltkamp, Scott B. Ficarro, Rachel Franchi, Brijesh K. Garg, Natali Gulbahce, Tong Hao, Amy M. Holthaus, Robert James, Anna Korkhin, Larisa Litovchick, Jessica C. Mar, Theodore R. Pak, Sabrina Rabello, Renee Rubio, Yun Shen, Saurav Singh, Jennifer M. Spangle, Murat Tasan, Shelly Wanamaker, James T. Webber, Jennifer Roecklein-Canfield, Eric Johannsen, Albert-László Barabási, Rameen Beroukhim, Elliott Kieff, Michael E. Cusick, David E. Hill, Karl Münger, Jarrod A. Marto, John Quackenbush, Frederick P. Roth, James A. DeCaprio, Marc Vidal

Nature. Author manuscript; available in PMC 2013 Jan 26.

Published in final edited form as: Nature. 2012 Jul 26; 487(7408): 491–495. doi: 10.1038/nature11288

PMCID:: PMC3408847

Abstract Article PDF–937K

Select item 317805918.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 298460919.

Joint influence of small-effect genetic variants on human longevity

Anatoliy I. Yashin, Deqing Wu, Konstantin G. Arbeev, Svetlana V. Ukraintseva

Aging (Albany NY) 2010 Sep; 2(9): 612–620. Published online 2010 Aug 26. doi: 10.18632/aging.100191

PMCID:: PMC2984609

Abstract Article PDF–1.3M

Select item 13924120.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

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