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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 108687272.

Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates

Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus

Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.

Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2

PMCID:: PMC10868727

Abstract Article PDF–7.0M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102922104.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 92860235.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89705887.

Dedicated chaperones coordinate co-translational regulation of ribosomal protein production with ribosome assembly to preserve proteostasis

Benjamin Pillet, Alfonso Méndez-Godoy, Guillaume Murat, Sébastien Favre, Michael Stumpe, Laurent Falquet, Dieter Kressler

eLife. 2022; 11: e74255. Published online 2022 Mar 31. doi: 10.7554/eLife.74255

PMCID:: PMC8970588

Abstract Article PDF–5.6M

Select item 84212048.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 83535269.

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription

David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz

J Cell Sci. 2021 Aug 1; 134(15): jcs259051. Published online 2021 Aug 5. doi: 10.1242/jcs.259051

PMCID:: PMC8353526

Abstract Article

Select item 767243410.

Mechanisms coordinating ribosomal protein gene transcription in response to stress

Sevil Zencir, Daniel Dilg, Maria Paula Rueda, David Shore, Benjamin Albert

Nucleic Acids Res. 2020 Nov 18; 48(20): 11408–11420. Published online 2020 Oct 21. doi: 10.1093/nar/gkaa852

PMCID:: PMC7672434

Abstract Article PDF–3.6M

Select item 765233311.

Exploring the Complexity of Protein-Level Dosage Compensation that Fine-Tunes Stoichiometry of Multiprotein Complexes

Koji Ishikawa, Akari Ishihara, Hisao Moriya

PLoS Genet. 2020 Oct; 16(10): e1009091. Published online 2020 Oct 28. doi: 10.1371/journal.pgen.1009091

PMCID:: PMC7652333

Abstract Article PDF–3.2M

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Systematic analysis of bypass suppression of essential genes

Jolanda van Leeuwen, Carles Pons, Guihong Tan, Jason Zi Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone

Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828

PMCID:: PMC7507402

Abstract Article PDF–1.8M

Select item 703181513.

TOM1 confers resistance to the aminoglycoside hygromycin B in Saccharomyces cerevisiae

Julia M Niekamp, Melissa D Evans, Abigail R Scott, Philip J Smaldino, Eric M Rubenstein

MicroPubl Biol. Author manuscript; available in PMC 2020 Feb 20.

Published in final edited form as: MicroPubl Biol. 2019; 2019: 10.17912/micropub.biology.000193. Published online 2019 Dec 6.

PMCID:: PMC7031815

Article PDF–396K

Select item 689951814.

In Vitro Reconstitution Defines the Minimal Requirements for Cdc48-Dependent Disassembly of the CMG Helicase in Budding Yeast

Progya P. Mukherjee, Karim P.M. Labib

Cell Rep. 2019 Sep 10; 28(11): 2777–2783.e4. Published online 2019 Sep 10. doi: 10.1016/j.celrep.2019.08.026

PMCID:: PMC6899518

Abstract Article

Select item 679201915.

The Sir4 H‐BRCT domain interacts with phospho‐proteins to sequester and repress yeast heterochromatin

Ishan Deshpande, Jeremy J Keusch, Kiran Challa, Vytautas Iesmantavicius, Susan M Gasser, Heinz Gut

EMBO J. 2019 Oct 15; 38(20): e101744. Published online 2019 Sep 12. doi: 10.15252/embj.2019101744

Correction in:: EMBO J. 2020 Jan 2; 39(1): e103976.

PMCID:: PMC6792019

Abstract Article PDF–2.0M

Select item 659784016.

DNA damage response activates respiration and thereby enlarges dNTP pools to promote cell survival in budding yeast

Pengli Bu, Shreya Nagar, Madhura Bhagwat, Pritpal Kaur, Ankita Shah, Joey Zeng, Ivana Vancurova, Ales Vancura

J Biol Chem. 2019 Jun 21; 294(25): 9771–9786. Published online 2019 May 9. doi: 10.1074/jbc.RA118.007266

PMCID:: PMC6597840

Abstract Article PDF–6.4M

Select item 657955717.

A ribosome assembly stress response regulates transcription to maintain proteome homeostasis

Benjamin Albert, Isabelle C Kos-Braun, Anthony K Henras, Christophe Dez, Maria Paula Rueda, Xu Zhang, Olivier Gadal, Martin Kos, David Shore

eLife. 2019; 8: e45002. Published online 2019 May 24. doi: 10.7554/eLife.45002

PMCID:: PMC6579557

Abstract Article PDF–5.4M

Select item 645064318.

The mRNA export adaptor Yra1 contributes to DNA double-strand break repair through its C-box domain

Valentina Infantino, Evelina Tutucci, Noël Yeh Martin, Audrey Zihlmann, Varinia Garcia-Molinero, Géraldine Silvano, Benoit Palancade, Françoise Stutz

PLoS One. 2019; 14(4): e0206336. Published online 2019 Apr 5. doi: 10.1371/journal.pone.0206336

PMCID:: PMC6450643

Abstract Article PDF–1.9M

Select item 587133319.

High levels of histones promote whole-genome-duplications and trigger a Swe1^WEE1-dependent phosphorylation of Cdc28^CDK1

Douglas Maya Miles, Xenia Peñate, Trinidad Sanmartín Olmo, Frederic Jourquin, Maria Cruz Muñoz Centeno, Manuel Mendoza, Marie-Noelle Simon, Sebastian Chavez, Vincent Geli

eLife. 2018; 7: e35337. Published online 2018 Mar 27. doi: 10.7554/eLife.35337

PMCID:: PMC5871333

Abstract Article PDF–5.3M

Select item 576535920.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

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