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Items: 18

1.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
The catalytic activity of the translation termination factor methyltransferase Mtq2-Trm112 complex is required for large ribosomal subunit biogenesis
Caroline Lacoux, Ludivine Wacheul, Kritika Saraf, Nicolas Pythoud, Emmeline Huvelle, Sabine Figaro, Marc Graille, Christine Carapito, Denis L J Lafontaine, Valérie Heurgué-Hamard
Nucleic Acids Res. 2020 Dec 2; 48(21): 12310–12325. Published online 2020 Nov 9. doi: 10.1093/nar/gkaa972
PMCID:
PMC7708063
AbstractArticlePDF–4.8M
6.
Thiol-based direct threat sensing by the stress-activated protein kinase Hog1
Angel Guerra-Moreno, Miguel A. Prado, Jessie Ang, Helena M. Schnell, Yagmur Micoogullari, Joao A. Paulo, Daniel Finley, Steven P. Gygi, John Hanna
Sci Signal. Author manuscript; available in PMC 2020 Jun 1.
Published in final edited form as: Sci Signal. 2019 Nov 26; 12(609): eaaw4956. Published online 2019 Nov 26. doi: 10.1126/scisignal.aaw4956
PMCID:
PMC7263400
AbstractArticlePDF–2.6M
7.
Intracellular mechanism by which arsenite activates the yeast stress MAPK Hog1
Jongmin Lee, David E. Levin
Mol Biol Cell. 2018 Aug 1; 29(15): 1904–1915. doi: 10.1091/mbc.E18-03-0185
PMCID:
PMC6085820
AbstractArticlePDF–1.2M
8.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
9.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
10.
Trm112 Is Required for Bud23-Mediated Methylation of the 18S rRNA at Position G1575
Sabine Figaro, Ludivine Wacheul, Stéphanie Schillewaert, Marc Graille, Emmeline Huvelle, Rémi Mongeard, Christiane Zorbas, Denis L. J. Lafontaine, Valérie Heurgué-Hamard
Mol Cell Biol. 2012 Jun; 32(12): 2254–2267. doi: 10.1128/MCB.06623-11
PMCID:
PMC3372273
AbstractArticlePDF–2.7M
11.
Involvement of N-6 Adenine-Specific DNA Methyltransferase 1 (N6AMT1) in Arsenic Biomethylation and Its Role in Arsenic-Induced Toxicity
Xuefeng Ren, Maria Aleshin, William J. Jo, Russel Dills, David A. Kalman, Christopher D. Vulpe, Martyn T. Smith, Luoping Zhang
Environ Health Perspect. 2011 Jun; 119(6): 771–777. Published online 2010 Dec 30. doi: 10.1289/ehp.1002733
PMCID:
PMC3114810
AbstractArticlePDF–493K
12.
Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins
Tanja Scherrer, Christian Femmer, Ralph Schiess, Ruedi Aebersold, André P Gerber
Genome Biol. 2011; 12(1): R3. Published online 2011 Jan 13. doi: 10.1186/gb-2011-12-1-r3
PMCID:
PMC3091301
AbstractArticlePDF–1.3M
13.
Trm112p Is a 15-kDa Zinc Finger Protein Essential for the Activity of Two tRNA and One Protein Methyltransferases in Yeast
Marie-Hélène Mazauric, Léon Dirick, Suresh K. Purushothaman, Glenn R. Björk, Bruno Lapeyre
J Biol Chem. 2010 Jun 11; 285(24): 18505–18515. Published online 2010 Apr 16. doi: 10.1074/jbc.M110.113100
PMCID:
PMC2881776
AbstractArticlePDF–1.5M
14.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
15.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M
16.
Synthetic Genetic Array Analysis in Saccharomyces cerevisiae Provides Evidence for an Interaction Between RAT8/DBP5 and Genes Encoding P-Body Components
John J. Scarcelli, Susan Viggiano, Christine A. Hodge, Catherine V. Heath, David C. Amberg, Charles N. Cole
Genetics. 2008 Aug; 179(4): 1945–1955. doi: 10.1534/genetics.108.091256
PMCID:
PMC2516071
AbstractArticlePDF–2.1M
17.
Trm11p and Trm112p Are both Required for the Formation of 2-Methylguanosine at Position 10 in Yeast tRNA
Suresh K. Purushothaman, Janusz M. Bujnicki, Henri Grosjean, Bruno Lapeyre
Mol Cell Biol. 2005 Jun; 25(11): 4359–4370. doi: 10.1128/MCB.25.11.4359-4370.2005
PMCID:
PMC1140639
AbstractArticlePDF–541K
18.
A comprehensive two-hybrid analysis to explore the yeast protein interactome
Takashi Ito, Tomoko Chiba, Ritsuko Ozawa, Mikio Yoshida, Masahira Hattori, Yoshiyuki Sakaki
Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8): 4569–4574. Published online 2001 Mar 13. doi: 10.1073/pnas.061034498
PMCID:
PMC31875
AbstractArticlePDF–110K

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