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Items: 1 to 20 of 24

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Proper regulation of inositolphosphorylceramide levels is required for acquirement of low pH resistance in budding yeast
Mikiko Otsu, Moeko Toume, Yutaro Yamaguchi, Motohiro Tani
Sci Rep. 2020; 10: 10792. Published online 2020 Jul 1. doi: 10.1038/s41598-020-67734-8
PMCID:
PMC7329899
AbstractArticlePDF–8.9M
5.
LAM Genes Contribute to Environmental Stress Tolerance but Sensibilize Yeast Cells to Azoles
Svyatoslav S. Sokolov, Margarita A. Vorobeva, Alexandra I. Smirnova, Ekaterina A. Smirnova, Nataliya I. Trushina, Kseniia V. Galkina, Fedor F. Severin, Dmitry A. Knorre
Front Microbiol. 2020; 11: 38. Published online 2020 Jan 28. doi: 10.3389/fmicb.2020.00038
PMCID:
PMC6997477
AbstractArticlePDF–6.7M
6.
Effects of Sterols on the Interaction of SDS, Benzalkonium Chloride, and A Novel Compound, Kor105, with Membranes
Irene Jiménez-Munguía, Pavel E. Volynsky, Oleg V. Batishchev, Sergey A. Akimov, Galina A. Korshunova, Ekaterina A. Smirnova, Dmitry A. Knorre, Sviatoslav S. Sokolov, Fedor F. Severin
Biomolecules. 2019 Oct; 9(10): 627. Published online 2019 Oct 18. doi: 10.3390/biom9100627
PMCID:
PMC6843611
AbstractArticlePDF–4.9M
7.
Protein Moonlighting Revealed by Noncatalytic Phenotypes of Yeast Enzymes
Adriana Espinosa-Cantú, Diana Ascencio, Selene Herrera-Basurto, Jiewei Xu, Assen Roguev, Nevan J. Krogan, Alexander DeLuna
Genetics. 2018 Jan; 208(1): 419–431. Published online 2017 Nov 10. doi: 10.1534/genetics.117.300377
PMCID:
PMC5753873
AbstractArticlePDF–1.5M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
10.
Sterol transporters at membrane contact sites regulate TORC1 and TORC2 signaling
Andrew Murley, Justin Yamada, Bradley J. Niles, Alexandre Toulmay, William A. Prinz, Ted Powers, Jodi Nunnari
J Cell Biol. 2017 Sep 4; 216(9): 2679–2689. doi: 10.1083/jcb.201610032
PMCID:
PMC5584152
AbstractArticlePDF–1.6M
11.
Using HHsearch to tackle proteins of unknown function: A pilot study with PH domains
David R. Fidler, Sarah E. Murphy, Katherine Courtis, Pantelis Antonoudiou, Rana El‐Tohamy, Jonathan Ient, Timothy P. Levine
Traffic. 2016 Nov; 17(11): 1214–1226. Published online 2016 Oct 9. doi: 10.1111/tra.12432
PMCID:
PMC5091641
AbstractArticlePDF–4.2M
12.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
13.
Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated
Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann
Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15
PMCID:
PMC4664882
AbstractArticlePDF–2.3M
14.
A new family of StART domain proteins at membrane contact sites has a role in ER-PM sterol transport
Alberto T Gatta, Louise H Wong, Yves Y Sere, Diana M Calderón-Noreña, Shamshad Cockcroft, Anant K Menon, Tim P Levine
eLife. 2015; 4: e07253. Published online 2015 May 22. doi: 10.7554/eLife.07253
PMCID:
PMC4463742
AbstractArticlePDF–4.5M
15.
A Conserved Endoplasmic Reticulum Membrane Protein Complex (EMC) Facilitates Phospholipid Transfer from the ER to Mitochondria
Sujoy Lahiri, Jesse T. Chao, Shabnam Tavassoli, Andrew K. O. Wong, Vineet Choudhary, Barry P. Young, Christopher J. R. Loewen, William A. Prinz
PLoS Biol. 2014 Oct; 12(10): e1001969. Published online 2014 Oct 14. doi: 10.1371/journal.pbio.1001969
PMCID:
PMC4196738
AbstractArticlePDF–8.0M
16.
Dissecting DNA damage response pathways by analyzing protein localization and abundance changes during DNA replication stress
Johnny M. Tkach, Askar Yimit, Anna Y. Lee, Michael Riffle, Michael Costanzo, Daniel Jaschob, Jason A. Hendry, Jiongwen Ou, Jason Moffat, Charles Boone, Trisha N. Davis, Corey Nislow, Grant W. Brown
Nat Cell Biol. Author manuscript; available in PMC 2013 Mar 1.
Published in final edited form as: Nat Cell Biol. 2012 Sep; 14(9): 966–976. Published online 2012 Jul 29. doi: 10.1038/ncb2549
PMCID:
PMC3434236
AbstractArticlePDF–1.5M
17.
Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs
Sara Sharifpoor, Dewald van Dyk, Michael Costanzo, Anastasia Baryshnikova, Helena Friesen, Alison C. Douglas, Ji-Young Youn, Benjamin VanderSluis, Chad L. Myers, Balázs Papp, Charles Boone, Brenda J. Andrews
Genome Res. 2012 Apr; 22(4): 791–801. doi: 10.1101/gr.129213.111
PMCID:
PMC3317160
AbstractArticlePDF–998K
18.
The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components
Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter
PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057
PMCID:
PMC3084213
AbstractArticlePDF–710K
19.
Rewiring of Genetic Networks in Response to DNA Damage
Sourav Bandyopadhyay, Monika Mehta, Dwight Kuo, Min-Kyung Sung, Ryan Chuang, Eric J. Jaehnig, Bernd Bodenmiller, Katherine Licon, Wilbert Copeland, Michael Shales, Dorothea Fiedler, Janusz Dutkowski, Aude Guénolé, Haico van Attikum, Kevan M. Shokat, Richard D. Kolodner, Won-Ki Huh, Ruedi Aebersold, Michael-Christopher Keogh, Nevan J. Krogan, Trey Ideker
Science. Author manuscript; available in PMC 2010 Dec 21.
Published in final edited form as: Science. 2010 Dec 3; 330(6009): 1385–1389. doi: 10.1126/science.1195618
Correction in:
volume 331 on page 284
PMCID:
PMC3006187
AbstractArticlePDF–1.9M
20.
The DNA Damage Response Pathway Contributes to the Stability of Chromosome III Derivatives Lacking Efficient Replicators
James F. Theis, Carmela Irene, Ann Dershowitz, Renee L. Brost, Michael L. Tobin, Fabiana M. di Sanzo, Jian-Ying Wang, Charles Boone, Carol S. Newlon
PLoS Genet. 2010 Dec; 6(12): e1001227. Published online 2010 Dec 2. doi: 10.1371/journal.pgen.1001227
PMCID:
PMC2996327
AbstractArticlePDF–1.7M

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