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Select item 96647171.

Hepatitis B virus suppresses complement C9 synthesis by limiting the availability of transcription factor USF-1 and inhibits formation of membrane attack complex: implications in disease pathogenesis

Ayana Baidya, Mousumi Khatun, Rajiv Kumar Mondal, Suchandrima Ghosh, Bidhan Chandra Chakraborty, Shreya Mallik, S. K. Mahiuddin Ahammed, Abhijit Chowdhury, Soma Banerjee, Simanti Datta

J Biomed Sci. 2022; 29: 97. Published online 2022 Nov 14. doi: 10.1186/s12929-022-00876-1

PMCID:: PMC9664717

Abstract Article PDF–4.4M

Select item 95403452.

The in vivo Interaction Landscape of Histones H3.1 and H3.3

Robert Siddaway, Scott Milos, Étienne Coyaud, Hwa Young Yun, Shahir M. Morcos, Sanja Pajovic, Eric I. Campos, Brian Raught, Cynthia Hawkins

Mol Cell Proteomics. 2022 Oct; 21(10): 100411. Published online 2022 Sep 9. doi: 10.1016/j.mcpro.2022.100411

PMCID:: PMC9540345

Abstract Article PDF–3.9M

Select item 89904623.

USF1-ATRAP-PBX3 Axis Promote Breast Cancer Glycolysis and Malignant Phenotype by Activating AKT/mTOR Signaling

Dandan Wang, Xiaoying Jin, Mengxia Lei, Ying Jiang, Yali Liu, Fei Yu, Yan Guo, Bing Han, Yue Yang, Weiling Sun, Ying Liu, Guangchun Zeng, Feng Liu, Jing Hu, Xuesong Chen

Int J Biol Sci. 2022; 18(6): 2452–2471. Published online 2022 Mar 14. doi: 10.7150/ijbs.69134

PMCID:: PMC8990462

Abstract Article PDF–3.8M

Select item 83641814.

Protein interaction landscapes revealed by advanced in vivo cross-linking–mass spectrometry

Andrew Wheat, Clinton Yu, Xiaorong Wang, Anthony M. Burke, Ilan E. Chemmama, Robyn M. Kaake, Peter Baker, Scott D. Rychnovsky, Jing Yang, Lan Huang

Proc Natl Acad Sci U S A. 2021 Aug 10; 118(32): e2023360118. Published online 2021 Aug 4. doi: 10.1073/pnas.2023360118

PMCID:: PMC8364181

Abstract Article PDF–3.0M

Select item 82203915.

PRISMA and BioID disclose a motifs-based interactome of the intrinsically disordered transcription factor C/EBPα

Evelyn Ramberger, Valeria Sapozhnikova, Elisabeth Kowenz-Leutz, Karin Zimmermann, Nathalie Nicot, Petr V. Nazarov, Daniel Perez-Hernandez, Ulf Reimer, Philipp Mertins, Gunnar Dittmar, Achim Leutz

iScience. 2021 Jun 25; 24(6): 102686. Published online 2021 Jun 4. doi: 10.1016/j.isci.2021.102686

PMCID:: PMC8220391

Abstract Article PDF–4.4M

Select item 81650306.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 80576457.

Upstream Transcription Factor 1 (USF1) Polymorphisms Associate with Alzheimer's Disease‐related Neuropathological Lesions: Tampere Autopsy Study

Karita Isotalo, Eloise Helena Kok, Teemu M Luoto, Satu Haikonen, Hannu Haapasalo, Terho Lehtimäki, Pekka J Karhunen

Brain Pathol. 2012 Nov; 22(6): 765–775. Published online 2012 Apr 12. doi: 10.1111/j.1750-3639.2012.00586.x

PMCID:: PMC8057645

Abstract Article PDF–1.1M

Select item 80090488.

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale

Science. Author manuscript; available in PMC 2021 Mar 30.

Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239

PMCID:: PMC8009048

Abstract Article PDF–2.6M

Select item 75990669.

Functional interrogation of HOXA9 regulome in MLLr leukemia via reporter-based CRISPR/Cas9 screen

Hao Zhang, Yang Zhang, Xinyue Zhou, Shaela Wright, Judith Hyle, Lianzhong Zhao, Jie An, Xujie Zhao, Ying Shao, Beisi Xu, Hyeong-Min Lee, Taosheng Chen, Yang Zhou, Xiang Chen, Rui Lu, Chunliang Li

eLife. 2020; 9: e57858. Published online 2020 Oct 1. doi: 10.7554/eLife.57858

PMCID:: PMC7599066

Abstract Article PDF–5.3M

Select item 744297210.

The transcription factor USF1 promotes glioma cell invasion and migration by activating lncRNA HAS2-AS1

Juntong Wang, Jingshun Gu, Aiwu You, Jun Li, Yuyan Zhang, Guomin Rao, Xuehua Ge, Kun Zhang, Jianfeng Li, Xiaohui Liu, Qianchao Wang, Ting Lin, Ling Cheng, Mengjiao Zhu, Xiaotang Wu, Dongchun Wang

Biosci Rep. 2020 Aug 28; 40(8): BSR20200487. Published online 2020 Aug 21. doi: 10.1042/BSR20200487

PMCID:: PMC7442972

Abstract Article PDF–1.1M

Select item 716998311.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 686968112.

LncRNA LOXL1‐AS1 facilitates the tumorigenesis and stemness of gastric carcinoma via regulation of miR‐708‐5p/USF1 pathway

Qi Sun, Jian Li, Fan Li, Huanqin Li, Songhua Bei, Xiaohong Zhang, Li Feng

Cell Prolif. 2019 Nov; 52(6): e12687. Published online 2019 Aug 29. doi: 10.1111/cpr.12687

PMCID:: PMC6869681

Abstract Article PDF–3.0M

Select item 685095013.

Up‐regulation of ZFAS1 indicates dismal prognosis for cholangiocarcinoma and promotes proliferation and metastasis by modulating USF1 via miR‐296‐5p

Zhenglong Li, Xingming Jiang, Lining Huang, Jinglin Li, Daolin Ji, Yi Xu, Kaiming Leng, Yunfu Cui

J Cell Mol Med. 2019 Dec; 23(12): 8258–8268. Published online 2019 Sep 29. doi: 10.1111/jcmm.14698

PMCID:: PMC6850950

Abstract Article PDF–1.8M

Select item 674205614.

Upstream Stimulatory Factors Are Mediators of Ca²⁺-Responsive Transcription in Neurons

Wen G. Chen, Anne E. West, Xu Tao, Gabriel Corfas, Marilyn N. Szentirmay, Michèle Sawadogo, Charles Vinson, Michael E. Greenberg

J Neurosci. 2003 Apr 1; 23(7): 2572–2581. doi: 10.1523/JNEUROSCI.23-07-02572.2003

PMCID:: PMC6742056

Abstract Article PDF–459K

Select item 665056115.

Hepatitis C Virus Induces the Ubiquitin-Editing Enzyme A20 via Depletion of the Transcription Factor Upstream Stimulatory Factor 1 To Support Its Replication

Jiyoung Lee, Stephanie T. Chan, Ja Yeon Kim, Jing-hsiung James Ou

mBio. 2019 Jul-Aug; 10(4): e01660-19. Published online 2019 Jul 23. doi: 10.1128/mBio.01660-19

PMCID:: PMC6650561

Abstract Article PDF–1021K

Select item 651546916.

Transcriptional Regulation Factors of the Human Mitochondrial Aspartate/Glutamate Carrier Gene, Isoform 2 (SLC25A13): USF1 as Basal Factor and FOXA2 as Activator in Liver Cells

Paolo Convertini, Simona Todisco, Francesco De Santis, Ilaria Pappalardo, Dominga Iacobazzi, Maria Antonietta Castiglione Morelli, Yvonne N. Fondufe-Mittendorf, Giuseppe Martelli, Ferdinando Palmieri, Vittoria Infantino

Int J Mol Sci. 2019 Apr; 20(8): 1888. Published online 2019 Apr 16. doi: 10.3390/ijms20081888

PMCID:: PMC6515469

Abstract Article PDF–1.7M

Select item 644365117.

USF1-induced upregulation of LINC01048 promotes cell proliferation and apoptosis in cutaneous squamous cell carcinoma by binding to TAF15 to transcriptionally activate YAP1

Lezi Chen, Quan Chen, Shifeng Kuang, Chengli Zhao, Lu Yang, Yi Zhang, Huilan Zhu, Ridong Yang

Cell Death Dis. 2019 Apr; 10(4): 296. Published online 2019 Apr 1. doi: 10.1038/s41419-019-1516-2

PMCID:: PMC6443651

Abstract Article PDF–2.6M

Select item 642009718.

H4K20me0 recognition by BRCA1-BARD1 directs homologous recombination in sister chromatids

Kyosuke Nakamura, Giulia Saredi, Jordan R. Becker, Benjamin M. Foster, Nhuong V. Nguyen, Tracey Beyer, Laura C. Cesa, Peter A. Faull, Saulius Lukauskas, Thomas Frimurer, J. Ross Chapman, Till Bartke, Anja Groth

Nat Cell Biol. Author manuscript; available in PMC 2019 Aug 25.

Published in final edited form as: Nat Cell Biol. 2019 Mar; 21(3): 311–318. Published online 2019 Feb 25. doi: 10.1038/s41556-019-0282-9

PMCID:: PMC6420097

Article PDF–1.7M

Select item 632591419.

The Regulation of Cbf1 by PAS Kinase Is a Pivotal Control Point for Lipogenesis vs. Respiration in Saccharomyces cerevisiae

Desiree DeMille, Jenny A. Pape, Benjamin T. Bikman, Majid Ghassemian, Julianne H. Grose

G3 (Bethesda) 2019 Jan; 9(1): 33–46. Published online 2018 Oct 31. doi: 10.1534/g3.118.200663

PMCID:: PMC6325914

Abstract Article PDF–2.0M

Select item 629362520.

USF1 deficiency alleviates inflammation, enhances cholesterol efflux and prevents cholesterol accumulation in macrophages

Maija Ruuth, Jarkko Soronen, Essi Kaiharju, Krista Merikanto, Julia Perttilä, Jari Metso, Miriam Lee-Rueckert, Marja-Riitta Taskinen, Petri T. Kovanen, Katariina Öörni, Vesa M. Olkkonen, Matti S. Jauhiainen, Pirkka-Pekka Laurila

Lipids Health Dis. 2018; 17: 285. Published online 2018 Dec 13. doi: 10.1186/s12944-018-0930-2

PMCID:: PMC6293625

Abstract Article PDF–1.9M

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