PMC Links for Nucleotide (Select 116094265) - PMC

Select item 16228701.

Comparative genomics of the lactic acid bacteria

K. Makarova, A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakhova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D. M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J.-H. Lee, I. Díaz-Muñiz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Ganesan, Y. Xie, H. Rawsthorne, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D. O'Sullivan, J. Steele, G. Unlu, M. Saier, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer, D. Mills

Proc Natl Acad Sci U S A. 2006 Oct 17; 103(42): 15611–15616. Published online 2006 Oct 9. doi: 10.1073/pnas.0607117103

PMCID:: PMC1622870

Abstract Article PDF–311K

Select item 63842542.

The Evolutionary History and Functional Divergence of Trehalase (treh) Genes in Insects

Andrea Nardelli, Matteo Vecchi, Mauro Mandrioli, Gian Carlo Manicardi

Front Physiol. 2019; 10: 62. Published online 2019 Feb 15. doi: 10.3389/fphys.2019.00062

PMCID:: PMC6384254

Abstract Article PDF–2.4M

Select item 59977893.

A Small Molecule-Screening Pipeline to Evaluate the Therapeutic Potential of 2-Aminoimidazole Molecules Against Clostridium difficile

Rajani Thanissery, Daina Zeng, Raul G. Doyle, Casey M. Theriot

Front Microbiol. 2018; 9: 1206. Published online 2018 Jun 6. doi: 10.3389/fmicb.2018.01206

PMCID:: PMC5997789

Abstract Article PDF–1.6M

Select item 52866554.

Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872

Burhan Lehri, Alan M. Seddon, Andrey V. Karlyshev

Stand Genomic Sci. 2017; 12: 19. Published online 2017 Feb 1. doi: 10.1186/s40793-017-0228-4

PMCID:: PMC5286655

Abstract Article PDF–1.5M

Select item 49207745.

Comparative Genomics Reveals Biomarkers to Identify Lactobacillus Species

Shikha Koul, Vipin Chandra Kalia

Indian J Microbiol. 2016 Sep; 56(3): 265–276. Published online 2016 Jun 16. doi: 10.1007/s12088-016-0605-5

PMCID:: PMC4920774

Abstract Article PDF–457K

Select item 47359806.

FN-Identify: Novel Restriction Enzymes-Based Method for Bacterial Identification in Absence of Genome Sequencing

Mohamed Awad, Osama Ouda, Ali El-Refy, Fawzy A. El-Feky, Kareem A. Mosa, Mohamed Helmy

Adv Bioinformatics. 2015; 2015: 303605. Published online 2015 Dec 31. doi: 10.1155/2015/303605

PMCID:: PMC4735980

Abstract Article PDF–852K

Select item 39576017.

The Gastrointestinal Tract of the White-Throated Woodrat (Neotoma albigula) Harbors Distinct Consortia of Oxalate-Degrading Bacteria

Aaron W. Miller, Kevin D. Kohl, M. Denise Dearing

Appl Environ Microbiol. 2014 Mar; 80(5): 1595–1601. doi: 10.1128/AEM.03742-13

PMCID:: PMC3957601

Abstract Article PDF–590K

Select item 39101438.

Microbial characterization of probiotics–Advisory report of the Working Group “8651 Probiotics” of the Belgian Superior Health Council (SHC)

Geert Huys, Nadine Botteldoorn, Frank Delvigne, Luc De Vuyst, Marc Heyndrickx, Bruno Pot, Jean-Jacques Dubois, Georges Daube

Mol Nutr Food Res. 2013 Aug; 57(8): 1479–1504. Published online 2013 Jun 25. doi: 10.1002/mnfr.201300065

PMCID:: PMC3910143

Abstract Article PDF–260K

Select item 37689139.

Comparative Analysis of two Component Signal Transduction Systems of the Lactobacillus Acidophilus Group

Yanhua Cui, Xiaojun Qu

Braz J Microbiol. 2011 Jan-Mar; 42(1): 147–157. doi: 10.1590/S1517-83822011000100019

PMCID:: PMC3768913

Abstract Article PDF–217K

Select item 366825310.

Inmembrane, a bioinformatic workflow for annotation of bacterial cell-surface proteomes

Andrew J Perry, Bosco K Ho

Source Code Biol Med. 2013; 8: 9. Published online 2013 Mar 19. doi: 10.1186/1751-0473-8-9

PMCID:: PMC3668253

Abstract Article PDF–702K

Select item 345858811.

Metabolism of Oligosaccharides and Starch in Lactobacilli: A Review

Michael G. Gänzle, Rainer Follador

Front Microbiol. 2012; 3: 340. Published online 2012 Sep 26. doi: 10.3389/fmicb.2012.00340

PMCID:: PMC3458588

Abstract Article PDF–772K

Select item 328294212.

Tracing Lifestyle Adaptation in Prokaryotic Genomes

Eric Altermann

Front Microbiol. 2012; 3: 48. Published online 2012 Feb 21. doi: 10.3389/fmicb.2012.00048

PMCID:: PMC3282942

Abstract Article PDF–2.7M

Select item 314505713.

Group-specific comparison of four lactobacilli isolated from human sources using differential blast analysis

Eric Altermann, Todd R. Klaenhammer

Genes Nutr. 2011 Aug; 6(3): 319–340. Published online 2010 Oct 28. doi: 10.1007/s12263-010-0191-9

PMCID:: PMC3145057

Abstract Article PDF–1.1M

Select item 308039214.

Host Specific Diversity in Lactobacillus johnsonii as Evidenced by a Major Chromosomal Inversion and Phage Resistance Mechanisms

Caitriona M. Guinane, Robert M. Kent, Sarah Norberg, Colin Hill, Gerald F. Fitzgerald, Catherine Stanton, R. Paul Ross

PLoS One. 2011; 6(4): e18740. Published online 2011 Apr 20. doi: 10.1371/journal.pone.0018740

PMCID:: PMC3080392

Abstract Article PDF–552K

Select item 291896415.

Origin of the Putrescine-Producing Ability of the Coagulase-Negative Bacterium Staphylococcus epidermidis 2015B

Emmanuel Coton, Niels Mulder, Monika Coton, Sylvie Pochet, Hein Trip, Juke S. Lolkema

Appl Environ Microbiol. 2010 Aug; 76(16): 5570–5576. Published online 2010 Jun 25. doi: 10.1128/AEM.00441-10

PMCID:: PMC2918964

Abstract Article PDF–599K

Select item 282741016.

The proteolytic system of lactic acid bacteria revisited: a genomic comparison

Mengjin Liu, Jumamurat R Bayjanov, Bernadet Renckens, Arjen Nauta, Roland J Siezen

BMC Genomics. 2010; 11: 36. Published online 2010 Jan 15. doi: 10.1186/1471-2164-11-36

PMCID:: PMC2827410

Abstract Article PDF–4.4M

Select item 266035017.

Comparative genomics of lactic acid bacteria reveals a niche-specific gene set

Orla O'Sullivan, John O'Callaghan, Amaia Sangrador-Vegas, Olivia McAuliffe, Lydia Slattery, Pawel Kaleta, Michael Callanan, Gerald F Fitzgerald, R Paul Ross, Tom Beresford

BMC Microbiol. 2009; 9: 50. Published online 2009 Mar 5. doi: 10.1186/1471-2180-9-50

PMCID:: PMC2660350

Abstract Article PDF–282K

Select item 256594918.

Removal of Antibiotic Resistance Gene-Carrying Plasmids from Lactobacillus reuteri ATCC 55730 and Characterization of the Resulting Daughter Strain, L. reuteri DSM 17938

Anna Rosander, Eamonn Connolly, Stefan Roos

Appl Environ Microbiol. 2008 Oct; 74(19): 6032–6040. Published online 2008 Aug 8. doi: 10.1128/AEM.00991-08

PMCID:: PMC2565949

Abstract Article PDF–498K

Select item 251935519.

Comparative Genomics of Enzymes in Flavor-Forming Pathways from Amino Acids in Lactic Acid Bacteria

Mengjin Liu, Arjen Nauta, Christof Francke, Roland J. Siezen

Appl Environ Microbiol. 2008 Aug; 74(15): 4590–4600. Published online 2008 Jun 6. doi: 10.1128/AEM.00150-08

PMCID:: PMC2519355

Article PDF–1.4M

Select item 251932220.

Analysis of the Genome Sequence of Lactobacillus gasseri ATCC 33323 Reveals the Molecular Basis of an Autochthonous Intestinal Organism

M. Andrea Azcarate-Peril, Eric Altermann, Yong Jun Goh, Richard Tallon, Rosemary B. Sanozky-Dawes, Erika A. Pfeiler, Sarah O'Flaherty, B. Logan Buck, Alleson Dobson, Tri Duong, Michael J. Miller, Rodolphe Barrangou, Todd R. Klaenhammer

Appl Environ Microbiol. 2008 Aug; 74(15): 4610–4625. Published online 2008 Jun 6. doi: 10.1128/AEM.00054-08

PMCID:: PMC2519322

Abstract Article PDF–943K

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