PMC Links for Nucleotide (Select 1519312394) - PMC

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Select item 67651171.

A CRISPR-Cas9 screen identifies essential CTCF anchor sites for estrogen receptor-driven breast cancer cell proliferation

Gozde Korkmaz, Zohar Manber, Rui Lopes, Stefan Prekovic, Karianne Schuurman, Yongsoo Kim, Hans Teunissen, Koen Flach, Elzo de Wit, Giorgio G Galli, Wilbert Zwart, Ran Elkon, Reuven Agami

Nucleic Acids Res. 2019 Oct 10; 47(18): 9557–9572. Published online 2019 Aug 2. doi: 10.1093/nar/gkz675

PMCID:: PMC6765117

Abstract Article PDF–4.7M

Select item 67534812.

CTCF cooperates with CtIP to drive homologous recombination repair of double-strand breaks

Soon Young Hwang, Mi Ae Kang, Chul Joon Baik, Yejin Lee, Ngo Thanh Hang, Byung-Gyu Kim, Joo Seok Han, Jae-Hoon Jeong, Daechan Park, Kyungjae Myung, Jong-Soo Lee

Nucleic Acids Res. 2019 Sep 26; 47(17): 9160–9179. Published online 2019 Jul 24. doi: 10.1093/nar/gkz639

PMCID:: PMC6753481

Abstract Article PDF–6.8M

Select item 66065833.

Enhancer accessibility and CTCF occupancy underlie asymmetric TAD architecture and cell type specific genome topology

Christopher Barrington, Dimitra Georgopoulou, Dubravka Pezic, Wazeer Varsally, Javier Herrero, Suzana Hadjur

Nat Commun. 2019; 10: 2908. Published online 2019 Jul 2. doi: 10.1038/s41467-019-10725-9

PMCID:: PMC6606583

Abstract Article PDF–3.8M

Select item 2312724.

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes.

G N Filippova, S Fagerlie, E M Klenova, C Myers, Y Dehner, G Goodwin, P E Neiman, S J Collins, V V Lobanenkov

Mol Cell Biol. 1996 Jun; 16(6): 2802–2813. doi: 10.1128/mcb.16.6.2802

PMCID:: PMC231272

Summary PDF–1.1M

Select item 66625945.

Sequencing Primate Genomes: What Have We Learned?

Tomas Marques-Bonet, Oliver A. Ryder, Evan E. Eichler

Annu Rev Genomics Hum Genet. Author manuscript; available in PMC 2019 Jul 29.

Published in final edited form as: Annu Rev Genomics Hum Genet. 2009; 10: 355–386. doi: 10.1146/annurev.genom.9.081307.164420

PMCID:: PMC6662594

Abstract Article PDF–2.0M

Select item 63056386.

Contribution of next generation sequencing in pediatric practice in Lebanon. A Study on 213 cases

Pratibha Nair, Sandra Sabbagh, Hicham Mansour, Ali Fawaz, Ghassan Hmaimess, Peter Noun, Rawane Dagher, Hala Megarbane, Sayeeda Hana, Saada Alame, Maher Lamaa, Dana Hasbini, Roula Farah, Mariam Rajab, Samantha Stora, Oulfat El‐Tourjuman, Pauline Abou Jaoude, Gihad Chalouhi, Rony Sayad, Anne‐Celine Gillart, Mahmoud Al‐Ali, Valerie Delague, Stephany El‐Hayek, André Mégarbané

Mol Genet Genomic Med. 2018 Nov; 6(6): 1041–1052. Published online 2018 Oct 7. doi: 10.1002/mgg3.480

PMCID:: PMC6305638

Abstract Article PDF–1.0M

Select item 45947677.

A conserved set of maternal genes? Insights from a molluscan transcriptome

M. MAUREEN LIU, JOHN W. DAVEY, DANIEL J. JACKSON, MARK L. BLAXTER, ANGUS DAVISON

Int J Dev Biol. Author manuscript; available in PMC 2015 Oct 6.

Published in final edited form as: Int J Dev Biol. 2014; 58(6-8): 501–511. doi: 10.1387/ijdb.140121ad

PMCID:: PMC4594767

Abstract Article PDF–1004K

Select item 40115828.

Hypomethylation of the CTCFL/BORIS promoter and aberrant expression during endometrial cancer progression suggests a role as an Epi-driver gene

Erling A. Hoivik, Kanthida Kusonmano, Mari K. Halle, Anna Berg, Elisabeth Wik, Henrica M. J. Werner, Kjell Petersen, Anne M. Oyan, Karl-Henning Kalland, Camilla Krakstad, Jone Trovik, Martin Widschwendter, Helga B. Salvesen

Oncotarget. 2014 Feb; 5(4): 1052–1061. Published online 2014 Jan 28. doi: 10.18632/oncotarget.1697

PMCID:: PMC4011582

Abstract Article PDF–1.7M

Select item 37988349.

The intellectual disability of trisomy 21: differences in gene expression in a case series of patients with lower and higher IQ

André Mégarbané, Florian Noguier, Samantha Stora, Laurent Manchon, Clotilde Mircher, Roman Bruno, Nathalie Dorison, Fabien Pierrat, Marie-Odile Rethoré, Bernadette Trentin, Aimé Ravel, Marine Morent, Gerard Lefranc, David Piquemal

Eur J Hum Genet. 2013 Nov; 21(11): 1253–1259. Published online 2013 Feb 20. doi: 10.1038/ejhg.2013.24

PMCID:: PMC3798834

Abstract Article PDF–410K

Select item 351520410.

Exome sequencing of serous endometrial tumors identifies recurrent somatic mutations in chromatin-remodeling and ubiquitin ligase complex genes

Matthieu Le Gallo, Andrea J. O’Hara, Meghan L. Rudd, Mary Ellen Urick, Nancy F. Hansen, Nigel J. O’Neil, Jessica C. Price, Suiyuan Zhang, Bryant M. England, Andrew K. Godwin, Dennis C. Sgroi, NISC Comparative Sequencing Program, Philip Hieter, James C. Mullikin, Maria J. Merino, Daphne W. Bell

Nat Genet. Author manuscript; available in PMC 2013 Jun 1.

Published in final edited form as: Nat Genet. 2012 Dec; 44(12): 1310–1315. Published online 2012 Oct 28. doi: 10.1038/ng.2455

PMCID:: PMC3515204

Abstract Article PDF–691K

Select item 333210811.

Loss of Maternal CTCF Is Associated with Peri-Implantation Lethality of Ctcf Null Embryos

James M. Moore, Natalia A. Rabaia, Leslie E. Smith, Sara Fagerlie, Kay Gurley, Dmitry Loukinov, Christine M. Disteche, Steven J. Collins, Christopher J. Kemp, Victor V. Lobanenkov, Galina N. Filippova

PLoS One. 2012; 7(4): e34915. Published online 2012 Apr 20. doi: 10.1371/journal.pone.0034915

PMCID:: PMC3332108

Abstract Article PDF–824K

Select item 327557912.

CTCF Mediates the Cell-Type Specific Spatial Organization of the Kcnq5 Locus and the Local Gene Regulation

Licheng Ren, Yang Wang, Minglei Shi, Xiaoning Wang, Zhong Yang, Zhihu Zhao

PLoS One. 2012; 7(2): e31416. Published online 2012 Feb 8. doi: 10.1371/journal.pone.0031416

Correction in:: PLoS One. 2012; 7(3): 10.1371/annotation/c6d76c92-dc6c-4102-86c0-03b996376778.

PMCID:: PMC3275579

Abstract Article PDF–531K

Select item 319714213.

Direct Identification of Insulator Components by Insertional Chromatin Immunoprecipitation

Toshitsugu Fujita, Hodaka Fujii

PLoS One. 2011; 6(10): e26109. Published online 2011 Oct 17. doi: 10.1371/journal.pone.0026109

PMCID:: PMC3197142

Abstract Article PDF–523K

Select item 313964014.

Widespread Expression of BORIS/CTCFL in Normal and Cancer Cells

Tania A. Jones, Babatunji W. Ogunkolade, Jaroslaw Szary, Johan Aarum, Muhammad A. Mumin, Shyam Patel, Christopher A. Pieri, Denise Sheer

PLoS One. 2011; 6(7): e22399. Published online 2011 Jul 19. doi: 10.1371/journal.pone.0022399

PMCID:: PMC3139640

Abstract Article PDF–2.0M

Select item 288838315.

Transforming Growth Factor β Promotes Complexes between Smad Proteins and the CCCTC-binding Factor on the H19 Imprinting Control Region Chromatin

Rosita Bergström, Katia Savary, Anita Morén, Sylvain Guibert, Carl-Henrik Heldin, Rolf Ohlsson, Aristidis Moustakas

J Biol Chem. 2010 Jun 25; 285(26): 19727–19737. Published online 2010 Apr 28. doi: 10.1074/jbc.M109.088385

PMCID:: PMC2888383

Abstract Article PDF–1.3M

Select item 284002716.

BORIS (CTCFL) Is Not Expressed in Most Human Breast Cell Lines and High Grade Breast Carcinomas

William C. Hines, Alexey V. Bazarov, Rituparna Mukhopadhyay, Paul Yaswen

PLoS One. 2010; 5(3): e9738. Published online 2010 Mar 17. doi: 10.1371/journal.pone.0009738

PMCID:: PMC2840027

Abstract Article PDF–524K

Select item 278547317.

CD38/CD31 interactions activate genetic pathways leading to proliferation and migration in chronic lymphocytic leukemia cells

Silvia Deaglio, Semra Aydin, Maurizia Mello Grand, Tiziana Vaisitti, Luciana Bergui, Giovanni D’Arena, Giovanna Chiorino, Fabio Malavasi

Mol Med. 2010 Mar-Apr; 16(3-4): 87–91. Published online 2009 Nov 28. doi: 10.2119/molmed.2009.00146

PMCID:: PMC2785473

Abstract Article PDF–245K

Select item 253118718.

Tobacco use induces anti-apoptotic, proliferative patterns of gene expression in circulating leukocytes of Caucasian males

Peter C Charles, Brian D Alder, Eleanor G Hilliard, Jonathan C Schisler, Robert E Lineberger, Joel S Parker, Sabeen Mapara, Samuel S Wu, Andrea Portbury, Cam Patterson, George A Stouffer

BMC Med Genomics. 2008; 1: 38. Published online 2008 Aug 18. doi: 10.1186/1755-8794-1-38

PMCID:: PMC2531187

Abstract Article PDF–1.5M

Select item 251563919.

The Evolution of Epigenetic Regulators CTCF and BORIS/CTCFL in Amniotes

Timothy A. Hore, Janine E. Deakin, Jennifer A. Marshall Graves

PLoS Genet. 2008 Aug; 4(8): e1000169. Published online 2008 Aug 29. doi: 10.1371/journal.pgen.1000169

PMCID:: PMC2515639

Abstract Article PDF–964K

Select item 182915620.

Transcriptional analysis of early lineage commitment in human embryonic stem cells

Andrew L Laslett, Sean Grimmond, Brooke Gardiner, Lincon Stamp, Adelia Lin, Susan M Hawes, Sam Wormald, David Nikolic-Paterson, David Haylock, Martin F Pera

BMC Dev Biol. 2007; 7: 12. Published online 2007 Mar 2. doi: 10.1186/1471-213X-7-12

PMCID:: PMC1829156

Abstract Article PDF–1.1M

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PMC Links for Nucleotide (Select 1519312394) (23)
PMC
nucleotidyltransferase family protein, partial [Pyxidicoccus fallax]
nucleotidyltransferase family protein, partial [Pyxidicoccus fallax]
gi|2727099941|ref|WP_343073629.1|

Protein
Anobiinae sp. isolate CY-UCY-DC00002192 cytochrome c oxidase subunit I (COX1) ge...
Anobiinae sp. isolate CY-UCY-DC00002192 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial
gi|2752590266|gb|PP969419.1|

Nucleotide
Anobiinae sp. isolate CY-UCY-DC00002265 cytochrome c oxidase subunit I (COX1) ge...
Anobiinae sp. isolate CY-UCY-DC00002265 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial
gi|2752590398|gb|PP969485.1|

Nucleotide
Anobiinae sp. isolate CY-UCY-DC00002457 cytochrome c oxidase subunit I (COX1) ge...
Anobiinae sp. isolate CY-UCY-DC00002457 cytochrome c oxidase subunit I (COX1) gene, partial cds; mitochondrial
gi|2752590738|gb|PP969655.1|

Nucleotide

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