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Items: 1 to 20 of 25

1.
Identification of fungi in shotgun metagenomics datasets
Paul D. Donovan, Gabriel Gonzalez, Desmond G. Higgins, Geraldine Butler, Kimihito Ito
PLoS One. 2018; 13(2): e0192898. Published online 2018 Feb 14. doi: 10.1371/journal.pone.0192898
PMCID:
PMC5812651
AbstractArticlePDF–5.9M
2.
Sequence-based information-theoretic features for gene essentiality prediction
Dawit Nigatu, Patrick Sobetzko, Malik Yousef, Werner Henkel
BMC Bioinformatics. 2017; 18: 473. Published online 2017 Nov 9. doi: 10.1186/s12859-017-1884-5
PMCID:
PMC5679510
AbstractArticlePDF–845K
3.
Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics
Sanshu Li, Ronald R. Breaker
BMC Genomics. 2017; 18: 785. Published online 2017 Oct 13. doi: 10.1186/s12864-017-4171-y
PMCID:
PMC5640933
AbstractArticlePDF–1.5M
4.
Ablation of RNA interference and retrotransposons accompany acquisition and evolution of transposases to heterochromatin protein CENPB
Udita Upadhyay, Suchita Srivastava, Indu Khatri, Jagpreet Singh Nanda, Srikrishna Subramanian, Amit Arora, Jagmohan Singh
Mol Biol Cell. 2017 Apr 15; 28(8): 1132–1146. doi: 10.1091/mbc.E16-07-0485
PMCID:
PMC5391189
AbstractArticlePDF–3.0M
5.
misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads
Xiao Zhu, Henry C. M. Leung, Rongjie Wang, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang
BMC Bioinformatics. 2015; 16: 386. Published online 2015 Nov 16. doi: 10.1186/s12859-015-0818-3
PMCID:
PMC4647709
AbstractArticlePDF–1.6M
6.
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM and Look Ahead Approach
Xiao Zhu, Henry C. M. Leung, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Bo Liu, Yadong Wang
PLoS One. 2014; 9(12): e114253. Published online 2014 Dec 2. doi: 10.1371/journal.pone.0114253
PMCID:
PMC4252104
AbstractArticlePDF–584K
7.
Two CDC42 paralogs modulate C. neoformans thermotolerance and morphogenesis under host physiological conditions
Elizabeth R. Ballou, Connie B. Nichols, Kathleen J Miglia, Lukasz Kozubowski, J. Andrew Alspaugh
Mol Microbiol. Author manuscript; available in PMC 2013 Jun 18.
Published in final edited form as: Mol Microbiol. 2010 Feb; 75(3): 763–780. Published online 2009 Dec 16. doi: 10.1111/j.1365-2958.2009.07019.x
PMCID:
PMC3685590
AbstractArticlePDF–5.1M
8.
Fission Yeast Sec3 Bridges the Exocyst Complex to the Actin Cytoskeleton
Isabelle Jourdain, Hannah C Dooley, Takashi Toda
Traffic. 2012 Nov; 13(11): 1481–1495. Published online 2012 Sep 7. doi: 10.1111/j.1600-0854.2012.01408.x
PMCID:
PMC3531892
AbstractArticlePDF–48M
9.
Quantitative single-molecule microscopy reveals that CENP-ACnp1 deposition occurs during G2 in fission yeast
David Lando, Ulrike Endesfelder, Harald Berger, Lakxmi Subramanian, Paul D. Dunne, James McColl, David Klenerman, Antony M. Carr, Markus Sauer, Robin C. Allshire, Mike Heilemann, Ernest D. Laue
Open Biol. 2012 Jul; 2(7): 120078. doi: 10.1098/rsob.120078
PMCID:
PMC3411111
AbstractArticlePDF–877K
10.
Crossover Invariance Determined by Partner Choice for Meiotic DNA Break Repair
Randy W. Hyppa, Gerald R. Smith
Cell. Author manuscript; available in PMC 2011 Jul 23.
Published in final edited form as: Cell. 2010 Jul 23; 142(2): 243–255. doi: 10.1016/j.cell.2010.05.041
PMCID:
PMC2911445
AbstractArticlePDF–1.2M
11.
Parameters for accurate genome alignment
Martin C Frith, Michiaki Hamada, Paul Horton
BMC Bioinformatics. 2010; 11: 80. Published online 2010 Feb 9. doi: 10.1186/1471-2105-11-80
PMCID:
PMC2829014
AbstractArticlePDF–1.2M
12.
Indistinguishable Landscapes of Meiotic DNA Breaks in rad50+ and rad50S Strains of Fission Yeast Revealed by a Novel rad50+ Recombination Intermediate
Randy W. Hyppa, Gareth A. Cromie, Gerald R. Smith
PLoS Genet. 2008 Nov; 4(11): e1000267. Published online 2008 Nov 21. doi: 10.1371/journal.pgen.1000267
PMCID:
PMC2580034
AbstractArticlePDF–567K
13.
The Symmetrical Structure of Structural Maintenance of Chromosomes (SMC) and MukB Proteins: Long, Antiparallel Coiled Coils, Folded at a Flexible Hinge
Thomas E. Melby, Charles N. Ciampaglio, Gina Briscoe, Harold P. Erickson
J Cell Biol. 1998 Sep 21; 142(6): 1595–1604. doi: 10.1083/jcb.142.6.1595
PMCID:
PMC2141774
AbstractArticlePDF–4.3M
14.
The Human Arp2/3 Complex Is Composed of Evolutionarily Conserved Subunits and Is Localized to Cellular Regions of Dynamic Actin Filament Assembly
Matthew D. Welch, Angela H. DePace, Suzie Verma, Akihiro Iwamatsu, Timothy J. Mitchison
J Cell Biol. 1997 Jul 28; 138(2): 375–384. doi: 10.1083/jcb.138.2.375
PMCID:
PMC2138188
AbstractArticlePDF–602K
15.
Dynein Promotes Achiasmate Segregation in Schizosaccharomyces pombe
Luther Davis, Gerald R. Smith
Genetics. 2005 Jun; 170(2): 581–590. doi: 10.1534/genetics.104.040253
PMCID:
PMC1450395
AbstractArticlePDF–160K
16.
A Natural Meiotic DNA Break Site in Schizosaccharomyces pombe Is a Hotspot of Gene Conversion, Highly Associated With Crossing Over
Gareth A. Cromie, Claudia A. Rubio, Randy W. Hyppa, Gerald R. Smith
Genetics. 2005 Feb; 169(2): 595–605. doi: 10.1534/genetics.104.037176
PMCID:
PMC1449127
AbstractArticlePDF–240K
17.
Highly expressed proteins have an increased frequency of alanine in the second amino acid position
Age Tats, Maido Remm, Tanel Tenson
BMC Genomics. 2006; 7: 28. Published online 2006 Feb 16. doi: 10.1186/1471-2164-7-28
PMCID:
PMC1397820
AbstractArticlePDF–1.2M
18.
Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae
Michaël Bekaert, Hugues Richard, Bernard Prum, Jean-Pierre Rousset
Genome Res. 2005 Oct; 15(10): 1411–1420. doi: 10.1101/gr.4258005
Retraction in:
Genome Res. 2006 Aug; 16(8): 1074.
PMCID:
PMC1240084
AbstractArticle
19.
Signal sequence analysis of expressed sequence tags from the nematode Nippostrongylus brasiliensis and the evolution of secreted proteins in parasites
Yvonne M Harcus, John Parkinson, Cecilia Fernández, Jennifer Daub, Murray E Selkirk, Mark L Blaxter, Rick M Maizels
Genome Biol. 2004; 5(6): R39. Published online 2004 May 18. doi: 10.1186/gb-2004-5-6-r39
PMCID:
PMC463072
AbstractArticlePDF–358K
20.
Comparative analysis of the base biases at the gene terminal portions in seven eukaryote genomes
Yoshihito Niimura, Mahito Terabe, Takashi Gojobori, Kin-ichiro Miura
Nucleic Acids Res. 2003 Sep 1; 31(17): 5195–5201. doi: 10.1093/nar/gkg701
PMCID:
PMC212801
AbstractArticlePDF–436K

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