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Links from Nucleotide

Items: 1 to 20 of 38

1.
Linking De Novo Assembly Results with Long DNA Reads Using the dnaasm-link Application
Wiktor Kuśmirek, Wiktor Franus, Robert Nowak
Biomed Res Int. 2019; 2019: 7847064. Published online 2019 Apr 11. doi: 10.1155/2019/7847064
PMCID:
PMC6487145
AbstractArticlePDF–896K
2.
The effects of transcription and recombination on mutational dynamics of short tandem repeats
Monika Zavodna, Andrew Bagshaw, Rudiger Brauning, Neil J Gemmell
Nucleic Acids Res. 2018 Feb 16; 46(3): 1321–1330. Published online 2017 Dec 29. doi: 10.1093/nar/gkx1253
PMCID:
PMC5814968
AbstractArticlePDF–1.2M
3.
Integrated analysis of individual codon contribution to protein biosynthesis reveals a new approach to improving the basis of rational gene design
Juan C. Villada, Otávio José Bernardes Brustolini, Wendel Batista da Silveira
DNA Res. 2017 Aug; 24(4): 419–434. Published online 2017 Apr 24. doi: 10.1093/dnares/dsx014
PMCID:
PMC5737324
AbstractArticlePDF–2.3M
4.
Scarless Gene Tagging with One-Step Transformation and Two-Step Selection in Saccharomyces cerevisiae and Schizosaccharomyces pombe
Dirk Landgraf, Dann Huh, Erinc Hallacli, Susan Lindquist
PLoS One. 2016; 11(10): e0163950. Published online 2016 Oct 13. doi: 10.1371/journal.pone.0163950
PMCID:
PMC5063382
AbstractArticlePDF–4.1M
5.
Massive Amplification at an Unselected Locus Accompanies Complex Chromosomal Rearrangements in Yeast
Agnès Thierry, Varun Khanna, Bernard Dujon
G3 (Bethesda) 2016 May; 6(5): 1201–1215. Published online 2016 Mar 4. doi: 10.1534/g3.115.024547
PMCID:
PMC4856073
AbstractArticlePDF–3.5M
6.
Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression
Yi-Jun Sheu, Justin B. Kinney, Bruce Stillman
Genome Res. 2016 Mar; 26(3): 315–330. doi: 10.1101/gr.195248.115
PMCID:
PMC4772014
AbstractArticlePDF–2.8M
7.
Extracting DNA words based on the sequence features: non-uniform distribution and integrity
Zhi Li, Hongyan Cao, Yuehua Cui, Yanbo Zhang
Theor Biol Med Model. 2016; 13: 2. Published online 2016 Jan 25. doi: 10.1186/s12976-016-0028-3
PMCID:
PMC4727310
AbstractArticlePDF–785K
8.
Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes
Agnès Thierry, Varun Khanna, Sophie Créno, Ingrid Lafontaine, Laurence Ma, Christiane Bouchier, Bernard Dujon
Nat Commun. 2015 Jan 30; 6: 6154. Published online 2015 Jan 30. doi: 10.1038/ncomms7154
PMCID:
PMC4317496
AbstractArticlePDF–2.6M
9.
The Accuracy, Feasibility and Challenges of Sequencing Short Tandem Repeats Using Next-Generation Sequencing Platforms
Monika Zavodna, Andrew Bagshaw, Rudiger Brauning, Neil J. Gemmell
PLoS One. 2014; 9(12): e113862. Published online 2014 Dec 1. doi: 10.1371/journal.pone.0113862
PMCID:
PMC4250034
AbstractArticlePDF–281K
10.
Highly Specific Contractions of a Single CAG/CTG Trinucleotide Repeat by TALEN in Yeast
Guy-Franck Richard, David Viterbo, Varun Khanna, Valentine Mosbach, Lauriane Castelain, Bernard Dujon
PLoS One. 2014; 9(4): e95611. Published online 2014 Apr 18. doi: 10.1371/journal.pone.0095611
PMCID:
PMC3991675
AbstractArticlePDF–1.2M
11.
The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now
Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S. Nash, Shuai Weng, Edith D. Wong, Paul Lloyd, Marek S. Skrzypek, Stuart R. Miyasato, Matt Simison, J. Michael Cherry
G3 (Bethesda) 2014 Mar; 4(3): 389–398. Published online 2013 Dec 27. doi: 10.1534/g3.113.008995
PMCID:
PMC3962479
AbstractArticlePDF–1006K
12.
Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models
Andreia J. Amaral, Francisco F. Brito, Tamar Chobanyan, Seiko Yoshikawa, Takakazu Yokokura, David Van Vactor, Margarida Gama-Carvalho
Front Genet. 2014; 5: 43. Published online 2014 Mar 5. doi: 10.3389/fgene.2014.00043
PMCID:
PMC3942661
AbstractArticlePDF–1.3M
13.
Molecular Components of Nitrate and Nitrite Efflux in Yeast
Elisa Cabrera, Rafaela González-Montelongo, Teresa Giraldez, Diego Alvarez de la Rosa, José M. Siverio
Eukaryot Cell. 2014 Feb; 13(2): 267–278. doi: 10.1128/EC.00268-13
PMCID:
PMC3910984
AbstractArticlePDF–1.7M
14.
Genomic analysis of Saccharomyces cerevisiae isolates that grow optimally with glucose as the sole carbon source
Anthony D. Aragon, Norah Torrez-Martinez, Jeremy S. Edwards
Electrophoresis. Author manuscript; available in PMC 2013 Dec 1.
Published in final edited form as: Electrophoresis. 2012 Dec; 33(23): 10.1002/elps.201200172. Published online 2012 Nov 8. doi: 10.1002/elps.201200172
PMCID:
PMC3822012
AbstractArticlePDF–131K
15.
Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions
Yan ping Chen, Jeffery S Pettis, Yan Zhao, Xinyue Liu, Luke J Tallon, Lisa D Sadzewicz, Renhua Li, Huoqing Zheng, Shaokang Huang, Xuan Zhang, Michele C Hamilton, Stephen F Pernal, Andony P Melathopoulos, Xianghe Yan, Jay D Evans
BMC Genomics. 2013; 14: 451. Published online 2013 Jul 5. doi: 10.1186/1471-2164-14-451
PMCID:
PMC3726280
AbstractArticlePDF–1.6M
16.
Starvation-Associated Genome Restructuring Can Lead to Reproductive Isolation in Yeast
Evgueny Kroll, Scott Coyle, Barbara Dunn, Gregory Koniges, Anthony Aragon, Jeremy Edwards, Frank Rosenzweig
PLoS One. 2013; 8(7): e66414. Published online 2013 Jul 24. doi: 10.1371/journal.pone.0066414
PMCID:
PMC3722211
AbstractArticlePDF–577K
17.
A Convolutional Code-Based Sequence Analysis Model and Its Application
Xiao Liu, Xiaoli Geng
Int J Mol Sci. 2013 Apr; 14(4): 8393–8405. Published online 2013 Apr 16. doi: 10.3390/ijms14048393
PMCID:
PMC3645750
AbstractArticlePDF–517K
18.
Toward almost closed genomes with GapFiller
Marten Boetzer, Walter Pirovano
Genome Biol. 2012; 13(6): R56. Published online 2012 Jun 25. doi: 10.1186/gb-2012-13-6-r56
PMCID:
PMC3446322
AbstractArticlePDF–413K
19.
Specific versus Non-Specific Immune Responses in an Invertebrate Species Evidenced by a Comparative de novo Sequencing Study
Emeline Deleury, Géraldine Dubreuil, Namasivayam Elangovan, Eric Wajnberg, Jean-Marc Reichhart, Benjamin Gourbal, David Duval, Olga Lucia Baron, Jérôme Gouzy, Christine Coustau
PLoS One. 2012; 7(3): e32512. Published online 2012 Mar 12. doi: 10.1371/journal.pone.0032512
PMCID:
PMC3299671
AbstractArticlePDF–1.5M
20.
Saccharomyces Genome Database: the genomics resource of budding yeast
J. Michael Cherry, Eurie L. Hong, Craig Amundsen, Rama Balakrishnan, Gail Binkley, Esther T. Chan, Karen R. Christie, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Kalpana Karra, Cynthia J. Krieger, Stuart R. Miyasato, Rob S. Nash, Julie Park, Marek S. Skrzypek, Matt Simison, Shuai Weng, Edith D. Wong
Nucleic Acids Res. 2012 Jan; 40(Database issue): D700–D705. Published online 2011 Nov 21. doi: 10.1093/nar/gkr1029
PMCID:
PMC3245034
AbstractArticlePDF–103K

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