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Items: 1 to 20 of 183

1.
Whole genome sequencing of Mycobacterium tuberculosis isolates and clinical outcomes of patients treated for multidrug-resistant tuberculosis in Tanzania
Bugwesa Z. Katale, Peter M. Mbelele, Nsiande A. Lema, Susana Campino, Stephen E. Mshana, Mark M. Rweyemamu, Jody E. Phelan, Julius D. Keyyu, Mtebe Majigo, Erasto V. Mbugi, Hazel M. Dockrell, Taane G. Clark, Mecky I. Matee, Stellah Mpagama
BMC Genomics. 2020; 21: 174. Published online 2020 Feb 21. doi: 10.1186/s12864-020-6577-1
PMCID:
PMC7035673
AbstractArticlePDF–1.0M
2.
Predicting nitroimidazole antibiotic resistance mutations in Mycobacterium tuberculosis with protein engineering
Brendon M. Lee, Liam K. Harold, Deepak V. Almeida, Livnat Afriat-Jurnou, Htin Lin Aung, Brian M. Forde, Kiel Hards, Sacha J. Pidot, F. Hafna Ahmed, A. Elaaf Mohamed, Matthew C. Taylor, Nicholas P. West, Timothy P. Stinear, Chris Greening, Scott A. Beatson, Eric L. Nuermberger, Gregory M. Cook, Colin J. Jackson
PLoS Pathog. 2020 Feb; 16(2): e1008287. Published online 2020 Feb 7. doi: 10.1371/journal.ppat.1008287
PMCID:
PMC7032734
AbstractArticlePDF–3.3M
3.
New insights into the mycobacterial PE and PPE proteins provide a framework for future research
Louis S. Ates
Mol Microbiol. 2020 Jan; 113(1): 4–21. Published online 2019 Nov 24. doi: 10.1111/mmi.14409
PMCID:
PMC7028111
AbstractArticlePDF–1.3M
4.
A Universal, Genomewide GuideFinder for CRISPR/Cas9 Targeting in Microbial Genomes
Michelle Spoto, Changhui Guan, Elizabeth Fleming, Julia Oh
mSphere. 2020 Jan-Feb; 5(1): e00086-20. Published online 2020 Feb 12. doi: 10.1128/mSphere.00086-20
PMCID:
PMC7021469
AbstractArticlePDF–2.1M
5.
Genomic Insights Into the Mycobacterium kansasii Complex: An Update
Tomasz Jagielski, Paulina Borówka, Zofia Bakuła, Jakub Lach, Błażej Marciniak, Anna Brzostek, Jarosław Dziadek, Mikołaj Dziurzyński, Lian Pennings, Jakko van Ingen, Manca Žolnir-Dovč, Dominik Strapagiel
Front Microbiol. 2019; 10: 2918. Published online 2020 Jan 15. doi: 10.3389/fmicb.2019.02918
PMCID:
PMC6974680
AbstractArticlePDF–10M
6.
Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases
Rana Jajou, Thomas A Kohl, Timothy Walker, Anders Norman, Daniela Maria Cirillo, Elisa Tagliani, Stefan Niemann, Albert de Neeling, Troels Lillebaek, Richard M Anthony, Dick van Soolingen
Euro Surveill. 2019 Dec 12; 24(50): 1900130. doi: 10.2807/1560-7917.ES.2019.24.50.1900130
PMCID:
PMC6918587
AbstractArticlePDF–263K
7.
MTS1338, A Small Mycobacterium tuberculosis RNA, Regulates Transcriptional Shifts Consistent With Bacterial Adaptation for Entering Into Dormancy and Survival Within Host Macrophages
Elena G. Salina, Artem Grigorov, Yulia Skvortsova, Konstantin Majorov, Oksana Bychenko, Albina Ostrik, Nadezhda Logunova, Dmitriy Ignatov, Arseny Kaprelyants, Alexander Apt, Tatyana Azhikina
Front Cell Infect Microbiol. 2019; 9: 405. Published online 2019 Nov 26. doi: 10.3389/fcimb.2019.00405
PMCID:
PMC6901956
AbstractArticlePDF–716K
8.
Testosterone Degradative Pathway of Novosphingobium tardaugens
Juan Ibero, Beatriz Galán, Eduardo Díaz, José L. García
Genes (Basel) 2019 Nov; 10(11): 871. Published online 2019 Oct 31. doi: 10.3390/genes10110871
PMCID:
PMC6895838
AbstractArticlePDF–3.0M
9.
Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations
Vanina Guernier-Cambert, Tanya Diefenbach-Elstob, Bernice J. Klotoe, Graham Burgess, Daniel Pelowa, Robert Dowi, Bisato Gula, Emma S. McBryde, Guislaine Refrégier, Catherine Rush, Christophe Sola, Jeffrey Warner
Sci Rep. 2019; 9: 15549. Published online 2019 Oct 29. doi: 10.1038/s41598-019-51892-5
PMCID:
PMC6820861
AbstractArticlePDF–3.0M
10.
Whole genome sequencing, analyses of drug resistance-conferring mutations, and correlation with transmission of Mycobacterium tuberculosis carrying katG-S315T in Hanoi, Vietnam
Nguyen Thi Le Hang, Minako Hijikata, Shinji Maeda, Pham Huu Thuong, Jun Ohashi, Hoang Van Huan, Nguyen Phuong Hoang, Akiko Miyabayashi, Vu Cao Cuong, Shintaro Seto, Nguyen Van Hung, Naoto Keicho
Sci Rep. 2019; 9: 15354. Published online 2019 Oct 25. doi: 10.1038/s41598-019-51812-7
PMCID:
PMC6814805
AbstractArticlePDF–2.4M
11.
Whole genome sequencing of drug resistant Mycobacterium tuberculosis isolates from a high burden tuberculosis region of North West Pakistan
Abdul Jabbar, Jody E. Phelan, Paola Florez de Sessions, Taj Ali Khan, Hazir Rahman, Sadiq Noor Khan, Daire M. Cantillon, Leticia Muraro Wildner, Sajid Ali, Susana Campino, Simon J. Waddell, Taane G. Clark
Sci Rep. 2019; 9: 14996. Published online 2019 Oct 18. doi: 10.1038/s41598-019-51562-6
PMCID:
PMC6802378
AbstractArticlePDF–1.2M
12.
Phase variation in Mycobacterium tuberculosis glpK produces transiently heritable drug tolerance
Hassan Safi, Pooja Gopal, Subramanya Lingaraju, Shuyi Ma, Carly Levine, Veronique Dartois, Michelle Yee, Liping Li, Landry Blanc, Hsin-Pin Ho Liang, Seema Husain, Mainul Hoque, Patricia Soteropoulos, Tige Rustad, David R. Sherman, Thomas Dick, David Alland
Proc Natl Acad Sci U S A. 2019 Sep 24; 116(39): 19665–19674. Published online 2019 Sep 5. doi: 10.1073/pnas.1907631116
PMCID:
PMC6765255
AbstractArticlePDF–1.4M
13.
Comparative fitness analysis of D-cycloserine resistant mutants reveals both fitness-neutral and high-fitness cost genotypes
Dimitrios Evangelopoulos, Gareth A. Prosser, Angela Rodgers, Belinda M. Dagg, Bhagwati Khatri, Mei Mei Ho, Maximiliano G. Gutierrez, Teresa Cortes, Luiz Pedro S. de Carvalho
Nat Commun. 2019; 10: 4177. Published online 2019 Sep 13. doi: 10.1038/s41467-019-12074-z
PMCID:
PMC6744398
AbstractArticlePDF–1.0M
14.
BINDER: computationally inferring a gene regulatory network for Mycobacterium abscessus
Patrick M. Staunton, Aleksandra A. Miranda-CasoLuengo, Brendan J. Loftus, Isobel Claire Gormley
BMC Bioinformatics. 2019; 20: 466. Published online 2019 Sep 10. doi: 10.1186/s12859-019-3042-8
PMCID:
PMC6734328
AbstractArticlePDF–2.0M
15.
Resuscitation of Dormant “Non-culturable” Mycobacterium tuberculosis Is Characterized by Immediate Transcriptional Burst
Elena G. Salina, Artem S. Grigorov, Oksana S. Bychenko, Yulia V. Skvortsova, Ilgar Z. Mamedov, Tatyana L. Azhikina, Arseny S. Kaprelyants
Front Cell Infect Microbiol. 2019; 9: 272. Published online 2019 Jul 30. doi: 10.3389/fcimb.2019.00272
PMCID:
PMC6689984
AbstractArticlePDF–3.0M
16.
Xpert MTB/RIF performance to diagnose tuberculosis and rifampicin resistance in a reference centre in southern Brazil
Cinara Silva Feliciano, Lucas José Bazzo Menon, Livia Maria Pala Anselmo, Anzaan Dippenaar, Robin Mark Warren, Wilson Araújo Silva, Jr, Valdes Roberto Bollela
ERJ Open Res. 2019 Jul; 5(3): 00043-2019. Published online 2019 Aug 5. doi: 10.1183/23120541.00043-2019
PMCID:
PMC6680070
AbstractArticlePDF–607K
17.
Differential determinants of virulence in two Mycobacterium tuberculosis Colombian clinical isolates of the LAM09 family
Andres Baena, Felipe Cabarcas, Karen L.F. Alvarez-Eraso, Juan Pablo Isaza, Juan F. Alzate, Luis F. Barrera
Virulence. 2019; 10(1): 695–710. Published online 2019 Jul 22. doi: 10.1080/21505594.2019.1642045
PMCID:
PMC6650194
AbstractArticlePDF–3.2M
18.
Toxin-mediated ribosome stalling reprograms the Mycobacterium tuberculosis proteome
Valdir C. Barth, Ju-Mei Zeng, Irina O. Vvedenskaya, Ming Ouyang, Robert N. Husson, Nancy A. Woychik
Nat Commun. 2019; 10: 3035. Published online 2019 Jul 10. doi: 10.1038/s41467-019-10869-8
PMCID:
PMC6620280
AbstractArticlePDF–1.9M
19.
Insights From the Genome Sequence of Mycobacterium paragordonae, a Potential Novel Live Vaccine for Preventing Mycobacterial Infections: The Putative Role of Type VII Secretion Systems for an Intracellular Lifestyle Within Free-Living Environmental Predators
Byoung-Jun Kim, Ga-Yeong Cha, Bo-Ram Kim, Yoon-Hoh Kook, Bum-Joon Kim
Front Microbiol. 2019; 10: 1524. Published online 2019 Jul 3. doi: 10.3389/fmicb.2019.01524
PMCID:
PMC6616192
AbstractArticlePDF–1.9M
20.
Mycobacterium tuberculosis whole genome sequencing provides insights into the Manila strain and drug-resistance mutations in the Philippines
Jody E. Phelan, Dodge R. Lim, Satoshi Mitarai, Paola Florez de Sessions, Ma. Angelica A. Tujan, Lorenzo T. Reyes, Inez Andrea P. Medado, Alma G. Palparan, Ahmad Nazri Mohamed Naim, Song Jie, Edelwisa Segubre-Mercado, Beatriz Simoes, Susana Campino, Julius C. Hafalla, Yoshiro Murase, Yuta Morishige, Martin L. Hibberd, Seiya Kato, Ma. Cecilia G. Ama, Taane G. Clark
Sci Rep. 2019; 9: 9305. Published online 2019 Jun 26. doi: 10.1038/s41598-019-45566-5
PMCID:
PMC6594935
AbstractArticlePDF–1.5M

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