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Select item 16814811.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Article PDF–141K

Select item 13252002.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Article PDF–204K

Select item 70737973.

CRISPR/Cas9 recombineering‐mediated deep mutational scanning of essential genes in Escherichia coli

Alaksh Choudhury, Jacob A Fenster, Reilly G Fankhauser, Joel L Kaar, Olivier Tenaillon, Ryan T Gill

Mol Syst Biol. 2020 Mar; 16(3): e9265. Published online 2020 Mar 16. doi: 10.15252/msb.20199265

PMCID:: PMC7073797

Article PDF–3.0M

Select item 70222264.

Rules and Exceptions: The Role of Chromosomal ParB in DNA Segregation and Other Cellular Processes

Adam Kawalek, Pawel Wawrzyniak, Aneta Agnieszka Bartosik, Grazyna Jagura-Burdzy

Microorganisms. 2020 Jan; 8(1): 0. Published online 2020 Jan 11. doi: 10.3390/microorganisms8010105

PMCID:: PMC7022226

Article PDF–2.8M

Select item 70218065.

In vitro self-replication and multicistronic expression of large synthetic genomes

K. Libicher, R. Hornberger, M. Heymann, H. Mutschler

Nat Commun. 2020; 11: 904. Published online 2020 Feb 14. doi: 10.1038/s41467-020-14694-2

PMCID:: PMC7021806

Article PDF–1.6M

Select item 70153196.

A stochastic model for simulating ribosome kinetics in vivo

Eric Charles Dykeman

PLoS Comput Biol. 2020 Feb; 16(2): e1007618. Published online 2020 Feb 12. doi: 10.1371/journal.pcbi.1007618

PMCID:: PMC7015319

Article PDF–2.4M

Select item 70018767.

Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression

Rob Phillips, Nathan M. Belliveau, Griffin Chure, Hernan G. Garcia, Manuel Razo-Mejia, Clarissa Scholes

Annu Rev Biophys. Author manuscript; available in PMC 2020 Feb 5.

Published in final edited form as: Annu Rev Biophys. 2019 May 6; 48: 121–163. doi: 10.1146/annurev-biophys-052118-115525

PMCID:: PMC7001876

Article PDF–2.1M

Select item 69950658.

Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli

Daniel W. Nielsen, Nicole Ricker, Nicolle L. Barbieri, Heather K. Allen, Lisa K. Nolan, Catherine M. Logue

BMC Res Notes. 2020; 13: 51. Published online 2020 Jan 31. doi: 10.1186/s13104-020-4917-5

PMCID:: PMC6995065

Article PDF–1.9M

Select item 69657109.

Computational evolution of an RNA-binding protein towards enhanced oxidized-RNA binding

Juan C. Gonzalez-Rivera, Asuka A. Orr, Sean M. Engels, Joseph M. Jakubowski, Mark W. Sherman, Katherine N. O'Connor, Tomas Matteson, Brendan C. Woodcock, Lydia M. Contreras, Phanourios Tamamis

Comput Struct Biotechnol J. 2020; 18: 137–152. Published online 2019 Dec 27. doi: 10.1016/j.csbj.2019.12.003

PMCID:: PMC6965710

Article PDF–4.3M

Select item 695220110.

IS26 Family Members IS257 and IS1216 Also Form Cointegrates by Copy-In and Targeted Conservative Routes

Christopher J. Harmer, Ruth M. Hall

mSphere. 2020 Jan-Feb; 5(1): e00811-19. Published online 2020 Jan 8. doi: 10.1128/mSphere.00811-19

PMCID:: PMC6952201

Article PDF–578K

Select item 693826611.

Transcript degradation and codon usage regulate gene expression in a lytic phage

Benjamin R Jack, Daniel R Boutz, Matthew L Paff, Bartram L Smith, Claus O Wilke

Virus Evol. 2019 Jul; 5(2): vez055. Published online 2019 Dec 31. doi: 10.1093/ve/vez055

PMCID:: PMC6938266

Article PDF–1.0M

Select item 692096912.

Characteristics of a Colistin-Resistant Escherichia coli ST695 Harboring the Chromosomally-Encoded mcr-1 Gene

Zhong Peng, Zizhe Hu, Zugang Li, Xiaosong Li, Chaoying Jia, Xiaoxue Zhang, Bin Wu, Huanchun Chen, Xiangru Wang

Microorganisms. 2019 Nov; 7(11): 558. Published online 2019 Nov 12. doi: 10.3390/microorganisms7110558

PMCID:: PMC6920969

Article PDF–1.8M

Select item 692095313.

Characteristics of Carbapenem-Resistant and Colistin-Resistant Escherichia coli Co-Producing NDM-1 and MCR-1 from Pig Farms in China

Zhong Peng, Xiaosong Li, Zizhe Hu, Zugang Li, Yujin Lv, Minggang Lei, Bin Wu, Huanchun Chen, Xiangru Wang

Microorganisms. 2019 Nov; 7(11): 482. Published online 2019 Oct 23. doi: 10.3390/microorganisms7110482

PMCID:: PMC6920953

Article PDF–1.6M

Select item 691808214.

Reassessing the Role of the Type II MqsRA Toxin-Antitoxin System in Stress Response and Biofilm Formation: mqsA Is Transcriptionally Uncoupled from mqsR

Nathan Fraikin, Clothilde J. Rousseau, Nathalie Goeders, Laurence Van Melderen

mBio. 2019 Nov-Dec; 10(6): e02678-19. Published online 2019 Dec 17. doi: 10.1128/mBio.02678-19

PMCID:: PMC6918082

Article PDF–960K

Select item 688128715.

Strain improvement of Escherichia coli K-12 for recombinant production of deuterated proteins

Vinardas Kelpšas, Claes von Wachenfeldt

Sci Rep. 2019; 9: 17694. Published online 2019 Nov 27. doi: 10.1038/s41598-019-54196-w

PMCID:: PMC6881287

Article PDF–2.1M

Select item 685418816.

Delayed Pulmonary Apoptosis of Diet-Induced Obesity Mice following Escherichia coli Infection through the Mitochondrial Apoptotic Pathway

Fengyuan Wang, Zhicai Zuo, Zhuangzhi Yang, Kejie Chen, Jing Fang, Hengmin Cui, Gang Shu, Yi Zhou, Yi Geng, Ping Ouyang

Oxid Med Cell Longev. 2019; 2019: 1968539. Published online 2019 Oct 22. doi: 10.1155/2019/1968539

PMCID:: PMC6854188

Article PDF–1.8M

Select item 676896417.

Identification of Genes Essential for Antibiotic-Induced Up-Regulation of Plasmid-Transfer-Genes in Cephalosporin Resistant Escherichia coli

Gang Liu, John Elmerdahl Olsen, Line Elnif Thomsen

Front Microbiol. 2019; 10: 2203. Published online 2019 Sep 24. doi: 10.3389/fmicb.2019.02203

PMCID:: PMC6768964

Article PDF–1.1M

Select item 668504318.

Temperature Response of Planktonic Microbiota in Remote Alpine Lakes

Yiming Jiang, Haiying Huang, Tianli Ma, Jinlong Ru, Stephan Blank, Rainer Kurmayer, Li Deng

Front Microbiol. 2019; 10: 1714. Published online 2019 Jul 31. doi: 10.3389/fmicb.2019.01714

PMCID:: PMC6685043

Article PDF–4.4M

Select item 668457719.

Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences

Steven M. Lakin, Alan Kuhnle, Bahar Alipanahi, Noelle R. Noyes, Chris Dean, Martin Muggli, Rob Raymond, Zaid Abdo, Mattia Prosperi, Keith E. Belk, Paul S. Morley, Christina Boucher

Commun Biol. 2019; 2: 294. Published online 2019 Aug 6. doi: 10.1038/s42003-019-0545-9