PMC Links for Nucleotide (Select 568336023) - PMC

Select item 67546221.

Non-coding RNA analysis using the Rfam database

Ioanna Kalvari, Eric P. Nawrocki, Joanna Argasinska, Natalia Quinones-Olvera, Robert D. Finn, Alex Bateman, Anton I. Petrov

Curr Protoc Bioinformatics. Author manuscript; available in PMC 2019 Sep 21.

Published in final edited form as: Curr Protoc Bioinformatics. 2018 Jun; 62(1): e51. Published online 2018 Jun 5. doi: 10.1002/cpbi.51

PMCID:: PMC6754622

Article PDF–2.6M

Select item 66639162.

Proficiency Testing of Virus Diagnostics Based on Bioinformatics Analysis of Simulated In Silico High-Throughput Sequencing Data Sets

Annika Brinkmann, Andreas Andrusch, Ariane Belka, Claudia Wylezich, Dirk Höper, Anne Pohlmann, Thomas Nordahl Petersen, Pierrick Lucas, Yannick Blanchard, Anna Papa, Angeliki Melidou, Bas B. Oude Munnink, Jelle Matthijnssens, Ward Deboutte, Richard J. Ellis, Florian Hansmann, Wolfgang Baumgärtner, Erhard van der Vries, Albert Osterhaus, Cesare Camma, Iolanda Mangone, Alessio Lorusso, Maurilia Marcacci, Alexandra Nunes, Miguel Pinto, Vítor Borges, Annelies Kroneman, Dennis Schmitz, Victor Max Corman, Christian Drosten, Terry C. Jones, Rene S. Hendriksen, Frank M. Aarestrup, Marion Koopmans, Martin Beer, Andreas Nitsche

J Clin Microbiol. 2019 Aug; 57(8): e00466-19. Prepublished online 2019 Jun 5. Published online 2019 Jul 26. doi: 10.1128/JCM.00466-19

PMCID:: PMC6663916

Article PDF–981K

Select item 63239533.

The UCSC Genome Browser database: 2019 update

Maximilian Haeussler, Ann S Zweig, Cath Tyner, Matthew L Speir, Kate R Rosenbloom, Brian J Raney, Christopher M Lee, Brian T Lee, Angie S Hinrichs, Jairo Navarro Gonzalez, David Gibson, Mark Diekhans, Hiram Clawson, Jonathan Casper, Galt P Barber, David Haussler, Robert M Kuhn, W James Kent

Nucleic Acids Res. 2019 Jan 8; 47(Database issue): D853–D858. Published online 2018 Nov 8. doi: 10.1093/nar/gky1095

PMCID:: PMC6323953

Article PDF–2.1M

Select item 61292694.

PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples

Andreas Andrusch, Piotr W Dabrowski, Jeanette Klenner, Simon H Tausch, Claudia Kohl, Abdalla A Osman, Bernhard Y Renard, Andreas Nitsche

Bioinformatics. 2018 Sep 1; 34(17): i715–i721. Published online 2018 Sep 8. doi: 10.1093/bioinformatics/bty595

PMCID:: PMC6129269

Article PDF–464K

Select item 59697685.

Mining of potential drug targets through the identification of essential and analogous enzymes in the genomes of pathogens of Glycine max, Zea mays and Solanum lycopersicum

Rangeline Azevedo da Silva, Leandro de Mattos Pereira, Melise Chaves Silveira, Rodrigo Jardim, Antonio Basilio de Miranda

PLoS One. 2018; 13(5): e0197511. Published online 2018 May 25. doi: 10.1371/journal.pone.0197511

PMCID:: PMC5969768

Article PDF–3.1M

Select item 57533756.

The European Nucleotide Archive in 2017

Nicole Silvester, Blaise Alako, Clara Amid, Ana Cerdeño-Tarrága, Laura Clarke, Iain Cleland, Peter W Harrison, Suran Jayathilaka, Simon Kay, Thomas Keane, Rasko Leinonen, Xin Liu, Josué Martínez-Villacorta, Manuela Menchi, Kethi Reddy, Nima Pakseresht, Jeena Rajan, Marc Rossello, Dmitriy Smirnov, Ana L Toribio, Daniel Vaughan, Vadim Zalunin, Guy Cochrane

Nucleic Acids Res. 2018 Jan 4; 46(Database issue): D36–D40. Published online 2017 Nov 13. doi: 10.1093/nar/gkx1125

PMCID:: PMC5753375

Article PDF–303K

Select item 47029037.

GenBank

Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers

Nucleic Acids Res. 2016 Jan 4; 44(Database issue): D67–D72. Published online 2015 Nov 20. doi: 10.1093/nar/gkv1276

PMCID:: PMC4702903

Article PDF–97K

Select item 45988438.

Genomic analyses reveal recurrent mutations in epigenetic modifiers and the JAK–STAT pathway in Sézary syndrome

Mark J. Kiel, Anagh A. Sahasrabuddhe, Delphine C. M. Rolland, Thirunavukkarasu Velusamy, Fuzon Chung, Matthew Schaller, Nathanael G. Bailey, Bryan L. Betz, Roberto N. Miranda, Pierluigi Porcu, John C. Byrd, L. Jeffrey Medeiros, Steven L. Kunkel, David W. Bahler, Megan S. Lim, Kojo S. J. Elenitoba-Johnson

Nat Commun. 2015; 6: 8470. Published online 2015 Sep 29. doi: 10.1038/ncomms9470

PMCID:: PMC4598843

Article PDF–1.4M

Select item 43839909.

GenBank

Dennis A. Benson, Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers

Nucleic Acids Res. 2015 Jan 28; 43(Database issue): D30–D35. Published online 2014 Nov 20. doi: 10.1093/nar/gku1216

PMCID:: PMC4383990

Article PDF–106K

Select item 396510410.

GenBank

Dennis A. Benson, Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers

Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D32–D37. Published online 2013 Nov 11. doi: 10.1093/nar/gkt1030

PMCID:: PMC3965104

Article PDF–124K

Select item 372331011.

ALDH1A3 loss of function causes bilateral anophthalmia/microphthalmia and hypoplasia of the optic nerve and optic chiasm

Mani Yahyavi, Hana Abouzeid, Ghada Gawdat, Anne-Sophie de Preux, Tong Xiao, Tanya Bardakjian, Adele Schneider, Alex Choi, Eric Jorgenson, Herwig Baier, Mohamad El Sada, Daniel F. Schorderet, Anne M. Slavotinek

Hum Mol Genet. 2013 Aug 15; 22(16): 3250–3258. Published online 2013 Apr 15. doi: 10.1093/hmg/ddt179

PMCID:: PMC3723310

Article PDF–401K

Select item 353119012.

GenBank

Dennis A. Benson, Mark Cavanaugh, Karen Clark, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, Eric W. Sayers

Nucleic Acids Res. 2013 Jan; 41(Database issue): D36–D42. Published online 2012 Nov 26. doi: 10.1093/nar/gks1195

PMCID:: PMC3531190

Article PDF–123K

Select item 342894913.

Whole-genome sequencing identifies recurrent somatic NOTCH2 mutations in splenic marginal zone lymphoma

Mark J. Kiel, Thirunavukkarasu Velusamy, Bryan L. Betz, Lili Zhao, Helmut G. Weigelin, Mark Y. Chiang, David R. Huebner-Chan, Nathanael G. Bailey, David T. Yang, Govind Bhagat, Roberto N. Miranda, David W. Bahler, L. Jeffrey Medeiros, Megan S. Lim, Kojo S.J. Elenitoba-Johnson

J Exp Med. 2012 Aug 27; 209(9): 1553–1565. doi: 10.1084/jem.20120910

PMCID:: PMC3428949

Article PDF–3.3M

Select item 330918114.

De Novo Pathogenic SCN8A Mutation Identified by Whole-Genome Sequencing of a Family Quartet Affected by Infantile Epileptic Encephalopathy and SUDEP

Krishna R. Veeramah, Janelle E. O'Brien, Miriam H. Meisler, Xiaoyang Cheng, Sulayman D. Dib-Hajj, Stephen G. Waxman, Dinesh Talwar, Santhosh Girirajan, Evan E. Eichler, Linda L. Restifo, Robert P. Erickson, Michael F. Hammer

Am J Hum Genet. 2012 Mar 9; 90(3): 502–510. doi: 10.1016/j.ajhg.2012.01.006

PMCID:: PMC3309181

Article PDF–458K

Select item 324503915.

GenBank

Dennis A. Benson, Ilene Karsch-Mizrachi, Karen Clark, David J. Lipman, James Ostell, Eric W. Sayers

Nucleic Acids Res. 2012 Jan; 40(Database issue): D48–D53. Published online 2011 Dec 5. doi: 10.1093/nar/gkr1202

PMCID:: PMC3245039

Article PDF–101K

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