PMC Links for Nucleotide (Select 9629357) - PMC

Susan H. Eshleman, Oliver Laeyendecker, Kai Kammers, Athena Chen, Mariya V. Sivay, Sanjay Kottapalli, Brandon M. Sie, Tiezheng Yuan, Daniel R. Monaco, Divya Mohan, Daniel Wansley, Tomasz Kula, Charles Morrison, Stephen J. Elledge, Ron Brookmeyer, Ingo Ruczinski, H. Benjamin Larman

Cell Rep. Author manuscript; available in PMC 2019 May 15.

Published in final edited form as: Cell Rep. 2019 Apr 30; 27(5): 1422–1433.e4. doi: 10.1016/j.celrep.2019.03.097

PMCID:: PMC6519133

Abstract Article PDF–2.2M

Select item 64870455.

DNAscan: personal computer compatible NGS analysis, annotation and visualisation

A. Iacoangeli, A. Al Khleifat, W. Sproviero, A. Shatunov, A. R. Jones, S. L. Morgan, A. Pittman, R. J. Dobson, S. J. Newhouse, A. Al-Chalabi

BMC Bioinformatics. 2019; 20: 213. Published online 2019 Apr 27. doi: 10.1186/s12859-019-2791-8

PMCID:: PMC6487045

Abstract Article PDF–1.2M

Select item 63673906.

Plasmid DNA contaminant in molecular reagents

N. Wally, M. Schneider, J. Thannesberger, M. T. Kastner, T. Bakonyi, S. Indik, T. Rattei, J. Bedarf, F. Hildebrand, J. Law, J. Jovel, C. Steininger

Sci Rep. 2019; 9: 1652. Published online 2019 Feb 7. doi: 10.1038/s41598-019-38733-1

PMCID:: PMC6367390

Abstract Article PDF–1.7M

Select item 63472247.

HIV-1 infection increases microRNAs that inhibit Dicer1, HRB and HIV-EP2, thereby reducing viral replication

Shira Modai, Luba Farberov, Eytan Herzig, Ofer Isakov, Amnon Hizi, Noam Shomron

PLoS One. 2019; 14(1): e0211111. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211111

PMCID:: PMC6347224

Abstract Article PDF–1.5M

Select item 63388688.

HIV peptidome-wide association study reveals patient-specific epitope repertoires associated with HIV control

Jatin Arora, Paul J. McLaren, Nimisha Chaturvedi, Mary Carrington, Jacques Fellay, Tobias L. Lenz

Proc Natl Acad Sci U S A. 2019 Jan 15; 116(3): 944–949. Published online 2019 Jan 2. doi: 10.1073/pnas.1812548116

PMCID:: PMC6338868

Abstract Article PDF–1.2M

Select item 63363359.

Epitranscriptomics: Correlation of N⁶-methyladenosine RNA methylation and pathway dysregulation in the hippocampus of HIV transgenic rats

Yu Fu, Barry Zorman, Pavel Sumazin, Pietro Paolo Sanna, Vez Repunte-Canonigo

PLoS One. 2019; 14(1): e0203566. Published online 2019 Jan 17. doi: 10.1371/journal.pone.0203566

PMCID:: PMC6336335

Abstract Article PDF–2.7M

Select item 633109510.

Metagenomic analysis of viruses in toilet waste from long distance flights—A new procedure for global infectious disease surveillance

Mathis Hjort Hjelmsø, Sarah Mollerup, Randi Holm Jensen, Carlotta Pietroni, Oksana Lukjancenko, Anna Charlotte Schultz, Frank M. Aarestrup, Anders Johannes Hansen

PLoS One. 2019; 14(1): e0210368. Published online 2019 Jan 14. doi: 10.1371/journal.pone.0210368

PMCID:: PMC6331095

Abstract Article PDF–1.8M

Select item 632814411.

Screening human cell lines for viral infections applying RNA-Seq data analysis

Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler

PLoS One. 2019; 14(1): e0210404. Published online 2019 Jan 10. doi: 10.1371/journal.pone.0210404

PMCID:: PMC6328144

Abstract Article PDF–1.5M

Select item 625693312.

Detection of HIV cDNA Point Mutations with Rolling-Circle Amplification Arrays

Lingwei Wu, Quanjun Liu, Zhongwei Wu, Zuhong Lu

Molecules. 2010 Feb; 15(2): 619–626. Published online 2010 Jan 27. doi: 10.3390/molecules15020619

PMCID:: PMC6256933

Abstract Article PDF–244K

Select item 615627313.

Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality

Sara R. Selitsky, David Marron, Lisle E. Mose, Joel S. Parker, Dirk P. Dittmer

mSystems. 2018 Sep-Oct; 3(5): e00081-18. Published online 2018 Sep 25. doi: 10.1128/mSystems.00081-18

PMCID:: PMC6156273

Abstract Article PDF–1.5M

Select item 572152514.

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

Abraham J. Kandathil, Florian P. Breitwieser, Jaiprasath Sachithanandham, Matthew Robinson, Shruti H. Mehta, Winston Timp, Steven L. Salzberg, David L. Thomas, Ashwin Balagopal

Ann Intern Med. Author manuscript; available in PMC 2018 Mar 30.

Published in final edited form as: Ann Intern Med. 2017 Jul 4; 167(1): 1–7. Published online 2017 Jun 6. doi: 10.7326/M17-0085

PMCID:: PMC5721525

Abstract Article PDF–761K

Select item 559962215.

Highly chromophoric Cy5-methionine for N-terminal fluorescent tagging of proteins in eukaryotic translation systems

Jung Min Kim, Baik Lin Seong

Sci Rep. 2017; 7: 11642. Published online 2017 Sep 14. doi: 10.1038/s41598-017-12028-9

PMCID:: PMC5599622

Abstract Article PDF–3.6M

Select item 554833716.

A random forest classifier for detecting rare variants in NGS data from viral populations

Raunaq Malhotra, Manjari Jha, Mary Poss, Raj Acharya

Comput Struct Biotechnol J. 2017; 15: 388–395. Published online 2017 Jul 19. doi: 10.1016/j.csbj.2017.07.001

PMCID:: PMC5548337

Abstract Article PDF–896K

Select item 554654217.

The folding competence of HIV-1 Tat mediated by interaction with TAR RNA

Jung Min Kim, Hee Sun Choi, Baik Lin Seong

RNA Biol. 2017; 14(7): 926–937. Published online 2017 Apr 18. doi: 10.1080/15476286.2017.1311455

PMCID:: PMC5546542

Abstract Article PDF–1.2M

Select item 548766518.

Evaluation of a Multidrug Assay for Monitoring Adherence to a Regimen for HIV Preexposure Prophylaxis in a Clinical Study, HIV Prevention Trials Network 073

Yinfeng Zhang, William Clarke, Mark A. Marzinke, Estelle Piwowar-Manning, Geetha Beauchamp, Autumn Breaud, Craig W. Hendrix, Gavin A. Cloherty, Lynda Emel, Scott Rose, Lisa Hightow-Weidman, Marc Siegel, Steven Shoptaw, Sheldon D. Fields, Darrell Wheeler, Susan H. Eshleman

Antimicrob Agents Chemother. 2017 Jul; 61(7): e02743-16. Prepublished online 2017 Apr 24. Published online 2017 Jun 27. doi: 10.1128/AAC.02743-16

PMCID:: PMC5487665

Abstract Article PDF–678K

Select item 545483819.

Genome-Wide Analyses of MicroRNA Profiling in Interleukin-27 Treated Monocyte-Derived Human Dendritic Cells Using Deep Sequencing: A Pilot Study

Xiaojun Hu, Qian Chen, Bharatwaj Sowrirajan, Marjorie Bosche, Tomozumi Imamichi, Brad T. Sherman

Int J Mol Sci. 2017 May; 18(5): 925. Published online 2017 Apr 28. doi: 10.3390/ijms18050925

PMCID:: PMC5454838

Abstract Article PDF–1.1M

Select item 539719420.

Modulation of the splicing regulatory function of SRSF10 by a novel compound that impairs HIV-1 replication

Lulzim Shkreta, Marco Blanchette, Johanne Toutant, Emmanuelle Wilhelm, Brendan Bell, Benjamin A. Story, Ahalya Balachandran, Alan Cochrane, Peter K. Cheung, P. Richard Harrigan, David S. Grierson, Benoit Chabot

Nucleic Acids Res. 2017 Apr 20; 45(7): 4051–4067. Published online 2016 Dec 7. doi: 10.1093/nar/gkw1223

PMCID:: PMC5397194

Abstract Article PDF–8.3M

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