PMC Links for Taxonomy (Select 1561972) - PMC

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Items: 19

Select item 70398631.

Metagenomic Insights Into the Cycling of Dimethylsulfoniopropionate and Related Molecules in the Eastern China Marginal Seas

Delei Song, Yunhui Zhang, Ji Liu, Haohui Zhong, Yanfen Zheng, Shun Zhou, Min Yu, Jonathan D. Todd, Xiao-Hua Zhang

Front Microbiol. 2020; 11: 157. Published online 2020 Feb 18. doi: 10.3389/fmicb.2020.00157

PMCID:: PMC7039863

Abstract Article PDF–7.2M

Select item 67942582.

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes

Karen Krüger, Meghan Chafee, T. Ben Francis, Tijana Glavina del Rio, Dörte Becher, Thomas Schweder, Rudolf I. Amann, Hanno Teeling

ISME J. 2019 Nov; 13(11): 2800–2816. Published online 2019 Jul 17. doi: 10.1038/s41396-019-0476-y

PMCID:: PMC6794258

Abstract Article PDF–3.6M

Select item 63812813.

Evolutionary Model of Cluster Divergence of the Emergent Marine Pathogen Vibrio vulnificus: From Genotype to Ecotype

Mario López-Pérez, Jane M. Jayakumar, Jose M. Haro-Moreno, Asier Zaragoza-Solas, Geethika Reddi, Francisco Rodriguez-Valera, Orr H. Shapiro, Munirul Alam, Salvador Almagro-Moreno

mBio. 2019 Jan-Feb; 10(1): e02852-18. Published online 2019 Feb 19. doi: 10.1128/mBio.02852-18

PMCID:: PMC6381281

Abstract Article PDF–5.7M

Select item 63744344.

Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria

Elham Karimi, Tina Keller-Costa, Beate M. Slaby, Cymon J. Cox, Ulisses N. da Rocha, Ute Hentschel, Rodrigo Costa

Sci Rep. 2019; 9: 1999. Published online 2019 Feb 13. doi: 10.1038/s41598-019-38737-x

PMCID:: PMC6374434

Abstract Article PDF–3.9M

Select item 63557935.

Marine biofilms constitute a bank of hidden microbial diversity and functional potential

Weipeng Zhang, Wei Ding, Yong-Xin Li, Chunkit Tam, Salim Bougouffa, Ruojun Wang, Bite Pei, Hoyin Chiang, Pokman Leung, Yanhong Lu, Jin Sun, He Fu, Vladimir B Bajic, Hongbin Liu, Nicole S. Webster, Pei-Yuan Qian

Nat Commun. 2019; 10: 517. Published online 2019 Jan 31. doi: 10.1038/s41467-019-08463-z

PMCID:: PMC6355793

Abstract Article PDF–1.9M

Select item 61943476.

Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench

Xinxu Zhang, Wei Xu, Yang Liu, Mingwei Cai, Zhuhua Luo, Meng Li

Front Microbiol. 2018; 9: 2402. Published online 2018 Oct 12. doi: 10.3389/fmicb.2018.02402

PMCID:: PMC6194347

Abstract Article PDF–2.4M

Select item 57909207.

Metagenomes Reveal Global Distribution of Bacterial Steroid Catabolism in Natural, Engineered, and Host Environments

Johannes Holert, Erick Cardenas, Lee H. Bergstrand, Elena Zaikova, Aria S. Hahn, Steven J. Hallam, William W. Mohn

mBio. 2018 Jan-Feb; 9(1): e02345-17. Published online 2018 Jan 30. doi: 10.1128/mBio.02345-17

PMCID:: PMC5790920

Abstract Article PDF–1.6M

Select item 54985508.

Microbiome of Trichodesmium Colonies from the North Pacific Subtropical Gyre

Mary R. Gradoville, Byron C. Crump, Ricardo M. Letelier, Matthew J. Church, Angelicque E. White

Front Microbiol. 2017; 8: 1122. Published online 2017 Jul 6. doi: 10.3389/fmicb.2017.01122

Correction in:: Front Microbiol. 2017; 8: 1780.

PMCID:: PMC5498550

Abstract Article PDF–2.6M

Select item 50992379.

An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes

Hannes Horn, Beate M. Slaby, Martin T. Jahn, Kristina Bayer, Lucas Moitinho-Silva, Frank Förster, Usama R. Abdelmohsen, Ute Hentschel

Front Microbiol. 2016; 7: 1751. Published online 2016 Nov 8. doi: 10.3389/fmicb.2016.01751

PMCID:: PMC5099237

Abstract Article PDF–5.9M

Select item 509312010.

Bacterial Human Virulence Genes across Diverse Habitats As Assessed by In silico Analysis of Environmental Metagenomes

Ditte A. Søborg, Niels B. Hendriksen, Mogens Kilian, Jan H. Christensen, Niels Kroer

Front Microbiol. 2016; 7: 1712. Published online 2016 Nov 3. doi: 10.3389/fmicb.2016.01712

PMCID:: PMC5093120

Abstract Article PDF–1.7M

Select item 475024611.

Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads

Yvan Le Bras, Olivier Collin, Cyril Monjeaud, Vincent Lacroix, Éric Rivals, Claire Lemaitre, Vincent Miele, Gustavo Sacomoto, Camille Marchet, Bastien Cazaux, Amal Zine El Aabidine, Leena Salmela, Susete Alves-Carvalho, Alexan Andrieux, Raluca Uricaru, Pierre Peterlongo

Gigascience. 2016; 5: 9. Published online 2016 Feb 11. doi: 10.1186/s13742-015-0105-2

PMCID:: PMC4750246

Abstract Article PDF–4.8M

Select item 469104812.

Metagenomic Analysis of Upwelling-Affected Brazilian Coastal Seawater Reveals Sequence Domains of Type I PKS and Modular NRPS

Rafael R. C. Cuadrat, Juliano C. Cury, Alberto M. R. Dávila

Int J Mol Sci. 2015 Dec; 16(12): 28285–28295. Published online 2015 Nov 27. doi: 10.3390/ijms161226101

PMCID:: PMC4691048

Abstract Article PDF–1.2M

Select item 425283713.

Mapping the Inner Workings of the Microbiome: Genomic- and Metagenomic-Based Study of Metabolism and Metabolic Interactions in the Human Microbiome

Ohad Manor, Roie Levy, Elhanan Borenstein

Cell Metab. Author manuscript; available in PMC 2015 Nov 4.

Published in final edited form as: Cell Metab. 2014 Nov 4; 20(5): 742–752. Published online 2014 Aug 28. doi: 10.1016/j.cmet.2014.07.021

PMCID:: PMC4252837

Abstract Article PDF–308K

Select item 412292514.

Pangenome Evidence for Extensive Interdomain Horizontal Transfer Affecting Lineage Core and Shell Genes in Uncultured Planktonic Thaumarchaeota and Euryarchaeota

Philippe Deschamps, Yvan Zivanovic, David Moreira, Francisco Rodriguez-Valera, Purificación López-García

Genome Biol Evol. 2014 Jul; 6(7): 1549–1563. Published online 2014 Jun 12. doi: 10.1093/gbe/evu127

PMCID:: PMC4122925

Abstract Article PDF–2.8M

Select item 386901215.

Physiologic and metagenomic attributes of the rhodoliths forming the largest CaCO₃ bed in the South Atlantic Ocean

Giselle S Cavalcanti, Gustavo B Gregoracci, Eidy O dos Santos, Cynthia B Silveira, Pedro M Meirelles, Leila Longo, Kazuyoshi Gotoh, Shota Nakamura, Tetsuya Iida, Tomoo Sawabe, Carlos E Rezende, Ronaldo B Francini-Filho, Rodrigo L Moura, Gilberto M Amado-Filho, Fabiano L Thompson

ISME J. 2014 Jan; 8(1): 52–62. Published online 2013 Aug 29. doi: 10.1038/ismej.2013.133

PMCID:: PMC3869012

Abstract Article PDF–1.9M

Select item 381583616.

Genomics of deep‐sea and sub‐seafloor microbes

Roland J. Siezen, Greer Wilson

Microb Biotechnol. 2009 Mar; 2(2): 157–163. Published online 2009 Feb 18. doi: 10.1111/j.1751-7915.2009.00092.x

PMCID:: PMC3815836

Article PDF–437K

Select item 332450617.

Finding a Needle in the Virus Metagenome Haystack - Micro-Metagenome Analysis Captures a Snapshot of the Diversity of a Bacteriophage Armoire

Jessica Ray, Michael Dondrup, Sejal Modha, Ida Helene Steen, Ruth-Anne Sandaa, Martha Clokie

PLoS One. 2012; 7(4): e34238. Published online 2012 Apr 11. doi: 10.1371/journal.pone.0034238

PMCID:: PMC3324506

Abstract Article PDF–482K

Select item 310124618.

Going Deeper: Metagenome of a Hadopelagic Microbial Community

Emiley A. Eloe, Douglas W. Fadrosh, Mark Novotny, Lisa Zeigler Allen, Maria Kim, Mary-Jane Lombardo, Joyclyn Yee-Greenbaum, Shibu Yooseph, Eric E. Allen, Roger Lasken, Shannon J. Williamson, Douglas H. Bartlett

PLoS One. 2011; 6(5): e20388. Published online 2011 May 24. doi: 10.1371/journal.pone.0020388