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Select item 34627571.

Gut Microbiota Composition Is Correlated to Grid Floor Induced Stress and Behavior in the BALB/c Mouse

Katja Maria Bangsgaard Bendtsen, Lukasz Krych, Dorte Bratbo Sørensen, Wanyong Pang, Dennis Sandris Nielsen, Knud Josefsen, Lars H. Hansen, Søren J. Sørensen, Axel Kornerup Hansen

PLoS One. 2012; 7(10): e46231. Published online 2012 Oct 2. doi: 10.1371/journal.pone.0046231

PMCID:: PMC3462757

Abstract Article PDF–706K

Select item 34599012.

Lactobacillus reuteri Maintains a Functional Mucosal Barrier during DSS Treatment Despite Mucus Layer Dysfunction

Johan Dicksved, Olof Schreiber, Ben Willing, Joel Petersson, Sara Rang, Mia Phillipson, Lena Holm, Stefan Roos

PLoS One. 2012; 7(9): e46399. Published online 2012 Sep 27. doi: 10.1371/journal.pone.0046399

PMCID:: PMC3459901

Abstract Article PDF–840K

Select item 34575553.

Candida albicans and Bacterial Microbiota Interactions in the Cecum during Recolonization following Broad-Spectrum Antibiotic Therapy

Katie L. Mason, John R. Erb Downward, Kelly D. Mason, Nicole R. Falkowski, Kathryn A. Eaton, John Y. Kao, Vincent B. Young, Gary B. Huffnagle

Infect Immun. 2012 Oct; 80(10): 3371–3380. doi: 10.1128/IAI.00449-12

PMCID:: PMC3457555

Abstract Article PDF–1.7M

Select item 34463144.

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

Nicola Segata, Susan Kinder Haake, Peter Mannon, Katherine P Lemon, Levi Waldron, Dirk Gevers, Curtis Huttenhower, Jacques Izard

Genome Biol. 2012; 13(6): R42. Published online 2012 Jun 14. doi: 10.1186/gb-2012-13-6-r42

PMCID:: PMC3446314

Abstract Article PDF–2.9M

Select item 34334485.

A Direct PCR Approach to Accelerate Analyses of Human-Associated Microbial Communities

Gilberto E. Flores, Jessica B. Henley, Noah Fierer

PLoS One. 2012; 7(9): e44563. Published online 2012 Sep 4. doi: 10.1371/journal.pone.0044563

PMCID:: PMC3433448

Abstract Article PDF–557K

Select item 34267086.

Changes in Bowel Microbiota Induced by Feeding Weanlings Resistant Starch Stimulate Transcriptomic and Physiological Responses

Wayne Young, Nicole C. Roy, Julian Lee, Blair Lawley, Don Otter, Gemma Henderson, Mark J. McCann, Gerald W. Tannock

Appl Environ Microbiol. 2012 Sep; 78(18): 6656–6664. doi: 10.1128/AEM.01536-12

PMCID:: PMC3426708

Abstract Article PDF–1.8M

Select item 34217777.

Oral and Airway Microbiota in HIV-Infected Pneumonia Patients

Shoko Iwai, Matthew Fei, Delphine Huang, Serena Fong, Anuradha Subramanian, Katherine Grieco, Susan V. Lynch, Laurence Huang

J Clin Microbiol. 2012 Sep; 50(9): 2995–3002. doi: 10.1128/JCM.00278-12

PMCID:: PMC3421777

Abstract Article PDF–1.5M

Select item 34166018.

Consumption of Lysozyme-Rich Milk Can Alter Microbial Fecal Populations

Elizabeth A. Maga, Prerak T. Desai, Bart C. Weimer, Nguyet Dao, Dietmar Kültz, James D. Murray

Appl Environ Microbiol. 2012 Sep; 78(17): 6153–6160. doi: 10.1128/AEM.00956-12

PMCID:: PMC3416601

Abstract Article PDF–788K

Select item 34118119.

Structural Changes of Gut Microbiota during Berberine-Mediated Prevention of Obesity and Insulin Resistance in High-Fat Diet-Fed Rats

Xu Zhang, Yufeng Zhao, Menghui Zhang, Xiaoyan Pang, Jia Xu, Chaoying Kang, Meng Li, Chenhong Zhang, Zhiguo Zhang, Yifei Zhang, Xiaoying Li, Guang Ning, Liping Zhao

PLoS One. 2012; 7(8): e42529. Published online 2012 Aug 3. doi: 10.1371/journal.pone.0042529

PMCID:: PMC3411811

Abstract Article PDF–1.1M

Select item 341086510.

Inferring Dynamic Signatures of Microbes in Complex Host Ecosystems

Georg K. Gerber, Andrew B. Onderdonk, Lynn Bry

PLoS Comput Biol. 2012 Aug; 8(8): e1002624. Published online 2012 Aug 2. doi: 10.1371/journal.pcbi.1002624

PMCID:: PMC3410865

Abstract Article PDF–748K

Select item 340950111.

Familial transmission rather than defective innate immunity shapes the distinct intestinal microbiota of TLR-deficient mice

Carles Ubeda, Lauren Lipuma, Asia Gobourne, Agnes Viale, Ingrid Leiner, Michele Equinda, Raya Khanin, Eric G. Pamer

J Exp Med. 2012 Jul 30; 209(8): 1445–1456. doi: 10.1084/jem.20120504

PMCID:: PMC3409501

Abstract Article PDF–2.9M

Select item 339433912.

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

Bernd W. Brandt, Marc J. Bonder, Susan M. Huse, Egija Zaura

Nucleic Acids Res. 2012 Jul; 40(Web Server issue): W82–W87. Published online 2012 May 22. doi: 10.1093/nar/gks418

PMCID:: PMC3394339

Abstract Article PDF–1.4M

Select item 338714613.

Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease

Eliseo Papa, Michael Docktor, Christopher Smillie, Sarah Weber, Sarah P. Preheim, Dirk Gevers, Georgia Giannoukos, Dawn Ciulla, Diana Tabbaa, Jay Ingram, David B. Schauer, Doyle V. Ward, Joshua R. Korzenik, Ramnik J. Xavier, Athos Bousvaros, Eric J. Alm

PLoS One. 2012; 7(6): e39242. Published online 2012 Jun 29. doi: 10.1371/journal.pone.0039242

PMCID:: PMC3387146

Abstract Article PDF–716K

Select item 338619314.

Human Intestinal Lumen and Mucosa-Associated Microbiota in Patients with Colorectal Cancer

Weiguang Chen, Fanlong Liu, Zongxin Ling, Xiaojuan Tong, Charlie Xiang

PLoS One. 2012; 7(6): e39743. Published online 2012 Jun 28. doi: 10.1371/journal.pone.0039743

PMCID:: PMC3386193

Abstract Article PDF–780K

Select item 337969315.

Role of innate immunity and the microbiota in liver fibrosis: crosstalk between the liver and gut

Ekihiro Seki, Bernd Schnabl

J Physiol. 2012 Feb 1; 590(Pt 3): 447–458. Published online 2011 Nov 28. doi: 10.1113/jphysiol.2011.219691

PMCID:: PMC3379693

Abstract Article PDF–1.3M

Select item 337964016.

Expression of the blood-group-related glycosyltransferase B4galnt2 influences the intestinal microbiota in mice

Fabian Staubach, Sven Künzel, Andrea C Baines, Andrew Yee, Beth M McGee, Fredrik Bäckhed, John F Baines, Jill M Johnsen

ISME J. 2012 Jul; 6(7): 1345–1355. Published online 2012 Jan 26. doi: 10.1038/ismej.2011.204

PMCID:: PMC3379640

Abstract Article PDF–632K

Select item 337048017.

High-Resolution Analysis of Gut Environment and Bacterial Microbiota Reveals Functional Compartmentation of the Gut in Wood-Feeding Higher Termites (Nasutitermes spp.)

Tim Köhler, Carsten Dietrich, Rudolf H. Scheffrahn, Andreas Brune

Appl Environ Microbiol. 2012 Jul; 78(13): 4691–4701. doi: 10.1128/AEM.00683-12

PMCID:: PMC3370480

Abstract Article PDF–901K

Select item 336254918.

High-Throughput Sequencing of 16S rRNA Gene Amplicons: Effects of Extraction Procedure, Primer Length and Annealing Temperature

Martin J. Sergeant, Chrystala Constantinidou, Tristan Cogan, Charles W. Penn, Mark J. Pallen

PLoS One. 2012; 7(5): e38094. Published online 2012 May 29. doi: 10.1371/journal.pone.0038094

PMCID:: PMC3362549

Abstract Article PDF–394K

Select item 334809619.

Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation

Robert R. Jenq, Carles Ubeda, Ying Taur, Clarissa C. Menezes, Raya Khanin, Jarrod A. Dudakov, Chen Liu, Mallory L. West, Natalie V. Singer, Michele J. Equinda, Asia Gobourne, Lauren Lipuma, Lauren F. Young, Odette M. Smith, Arnab Ghosh, Alan M. Hanash, Jenna D. Goldberg, Kazutoshi Aoyama, Bruce R. Blazar, Eric G. Pamer, Marcel R.M. van den Brink

J Exp Med. 2012 May 7; 209(5): 903–911. doi: 10.1084/jem.20112408