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Select item 70291321.

The pentose phosphate pathway of cellulolytic clostridia relies on 6-phosphofructokinase instead of transaldolase

Jeroen G. Koendjbiharie, Shuen Hon, Martin Pabst, Robert Hooftman, David M. Stevenson, Jingxuan Cui, Daniel Amador-Noguez, Lee R. Lynd, Daniel G. Olson, Richard van Kranenburg

J Biol Chem. 2020 Feb 14; 295(7): 1867–1878. Published online 2019 Dec 22. doi: 10.1074/jbc.RA119.011239

PMCID:: PMC7029132

Abstract Article PDF–1.4M

Select item 65438382.

Assessing Cofactor Usage in Pseudoclostridium thermosuccinogenes via Heterologous Expression of Central Metabolic Enzymes

Jeroen Girwar Koendjbiharie, Kimberly Wevers, Richard van Kranenburg

Front Microbiol. 2019; 10: 1162. Published online 2019 May 24. doi: 10.3389/fmicb.2019.01162

PMCID:: PMC6543838

Abstract Article PDF–601K

Select item 61722693.

Genome-wide analysis of horizontally acquired genes in the genus Mycobacterium

Arup Panda, Michel Drancourt, Tamir Tuller, Pierre Pontarotti

Sci Rep. 2018; 8: 14817. Published online 2018 Oct 4. doi: 10.1038/s41598-018-33261-w

PMCID:: PMC6172269

Abstract Article PDF–2.0M

Select item 61714784.

Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach

Vartul Sangal, Michael Goodfellow, Jochen Blom, Geok Yuan Annie Tan, Hans-Peter Klenk, Iain C. Sutcliffe

Front Microbiol. 2018; 9: 2281. Published online 2018 Sep 27. doi: 10.3389/fmicb.2018.02281

PMCID:: PMC6171478

Abstract Article PDF–3.7M

Select item 61136285.

Genome-Based Taxonomic Classification of the Phylum Actinobacteria

Imen Nouioui, Lorena Carro, Marina García-López, Jan P. Meier-Kolthoff, Tanja Woyke, Nikos C. Kyrpides, Rüdiger Pukall, Hans-Peter Klenk, Michael Goodfellow, Markus Göker

Front Microbiol. 2018; 9: 2007. Published online 2018 Aug 22. doi: 10.3389/fmicb.2018.02007

PMCID:: PMC6113628

Abstract Article PDF–5.3M

Select item 59848346.

Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species

Martina Adamek, Mohammad Alanjary, Helena Sales-Ortells, Michael Goodfellow, Alan T. Bull, Anika Winkler, Daniel Wibberg, Jörn Kalinowski, Nadine Ziemert

BMC Genomics. 2018; 19: 426. Published online 2018 Jun 1. doi: 10.1186/s12864-018-4809-4

PMCID:: PMC5984834

Abstract Article PDF–2.8M

Select item 59245757.

Unraveling the structure and mechanism of the MST(ery) enzymes

Catherine L. Shelton, Audrey L. Lamb

Trends Biochem Sci. Author manuscript; available in PMC 2019 May 1.

Published in final edited form as: Trends Biochem Sci. 2018 May; 43(5): 342–357. Published online 2018 Mar 21. doi: 10.1016/j.tibs.2018.02.011

PMCID:: PMC5924575

Abstract Article PDF–1.8M

Select item 58633728.

Lignolytic-consortium omics analyses reveal novel genomes and pathways involved in lignin modification and valorization

Eduardo C. Moraes, Thabata M. Alvarez, Gabriela F. Persinoti, Geizecler Tomazetto, Livia B. Brenelli, Douglas A. A. Paixão, Gabriela C. Ematsu, Juliana A. Aricetti, Camila Caldana, Neil Dixon, Timothy D. H. Bugg, Fabio M. Squina

Biotechnol Biofuels. 2018; 11: 75. Published online 2018 Mar 22. doi: 10.1186/s13068-018-1073-4

PMCID:: PMC5863372

Abstract Article PDF–4.0M

Select item 56407899.

A systematic study of the whole genome sequence of Amycolatopsis methanolica strain 239^T provides an insight into its physiological and taxonomic properties which correlate with its position in the genus

Biao Tang, Feng Xie, Wei Zhao, Jian Wang, Shengwang Dai, Huajun Zheng, Xiaoming Ding, Xufeng Cen, Haican Liu, Yucong Yu, Haokui Zhou, Yan Zhou, Lixin Zhang, Michael Goodfellow, Guo-Ping Zhao

Synth Syst Biotechnol. 2016 Sep; 1(3): 169–186. Published online 2016 Sep 1. doi: 10.1016/j.synbio.2016.05.001

PMCID:: PMC5640789

Abstract Article PDF–6.7M

Select item 492076810.

Genetics and Genomics of the Genus Amycolatopsis

Rashmi Kumari, Priya Singh, Rup Lal

Indian J Microbiol. 2016 Sep; 56(3): 233–246. Published online 2016 May 2. doi: 10.1007/s12088-016-0590-8

PMCID:: PMC4920768

Abstract Article PDF–1.1M

Select item 466486911.

N-Terminal Presequence-Independent Import of Phosphofructokinase into Hydrogenosomes of Trichomonas vaginalis

Petr Rada, Abhijith Radhakrishna Makki, Verena Zimorski, Sriram Garg, Vladimír Hampl, Ivan Hrdý, Sven B. Gould, Jan Tachezy

Eukaryot Cell. 2015 Dec; 14(12): 1264–1275. Prepublished online 2015 Oct 16. Published online 2015 Nov 30. doi: 10.1128/EC.00104-15

PMCID:: PMC4664869

Abstract Article PDF–3.3M

Select item 458525012.

Thermophilic and alkaliphilic Actinobacteria: biology and potential applications

L. Shivlata, Tulasi Satyanarayana

Front Microbiol. 2015; 6: 1014. Published online 2015 Sep 25. doi: 10.3389/fmicb.2015.01014

PMCID:: PMC4585250

Abstract Article PDF–6.3M

Select item 438387313.

HAMAP in 2015: updates to the protein family classification and annotation system

Ivo Pedruzzi, Catherine Rivoire, Andrea H. Auchincloss, Elisabeth Coudert, Guillaume Keller, Edouard de Castro, Delphine Baratin, Béatrice A. Cuche, Lydie Bougueleret, Sylvain Poux, Nicole Redaschi, Ioannis Xenarios, Alan Bridge

Nucleic Acids Res. 2015 Jan 28; 43(Database issue): D1064–D1070. Published online 2014 Oct 27. doi: 10.1093/nar/gku1002

PMCID:: PMC4383873

Abstract Article PDF–3.2M

Select item 395884714.

Structural Data on the Periplasmic Aldehyde Oxidoreductase PaoABC from Escherichia coli: SAXS and Preliminary X-ray Crystallography Analysis

Ana Rita Otrelo-Cardoso, Márcia Alexandra da Silva Correia, Viola Schwuchow, Dmitri I. Svergun, Maria João Romão, Silke Leimkühler, Teresa Santos-Silva

Int J Mol Sci. 2014 Feb; 15(2): 2223–2236. Published online 2014 Jan 31. doi: 10.3390/ijms15022223

PMCID:: PMC3958847

Abstract Article PDF–461K

Select item 395773015.

Carbohydrate Metabolism in Archaea: Current Insights into Unusual Enzymes and Pathways and Their Regulation

Christopher Bräsen, Dominik Esser, Bernadette Rauch, Bettina Siebers

Microbiol Mol Biol Rev. 2014 Mar; 78(1): 89–175. doi: 10.1128/MMBR.00041-13

PMCID:: PMC3957730

Abstract Article PDF–11M

Select item 391652416.

Three Different Classes of Aminotransferases Evolved Prephenate Aminotransferase Functionality in Arogenate-competent Microorganisms

Matthieu Graindorge, Cécile Giustini, Alexandra Kraut, Lucas Moyet, Gilles Curien, Michel Matringe

J Biol Chem. 2014 Feb 7; 289(6): 3198–3208. Published online 2013 Dec 3. doi: 10.1074/jbc.M113.486480

PMCID:: PMC3916524

Abstract Article PDF–2.4M

Select item 390565317.

Characterization of two transketolases encoded on the chromosome and the plasmid pBM19 of the facultative ribulose monophosphate cycle methylotroph Bacillus methanolicus

Benno Markert, Jessica Stolzenberger, Trygve Brautaset, Volker F Wendisch

BMC Microbiol. 2014; 14: 7. Published online 2014 Jan 9. doi: 10.1186/1471-2180-14-7

PMCID:: PMC3905653

Abstract Article PDF–645K

Select item 381153318.

C₁ Metabolism in Corynebacterium glutamicum: an Endogenous Pathway for Oxidation of Methanol to Carbon Dioxide

Sabrina Witthoff, Alice Mühlroth, Jan Marienhagen, Michael Bott

Appl Environ Microbiol. 2013 Nov; 79(22): 6974–6983. doi: 10.1128/AEM.02705-13

PMCID:: PMC3811533

Abstract Article PDF–872K

Select item 381139219.

Comparative Proteomic Analysis of Streptomyces lividans Wild-Type and ppk Mutant Strains Reveals the Importance of Storage Lipids for Antibiotic Biosynthesis

Pierre Le Maréchal, Paulette Decottignies, Christophe H. Marchand, Jeril Degrouard, Danièle Jaillard, Thierry Dulermo, Marine Froissard, Aleksey Smirnov, Violaine Chapuis, Marie-Joelle Virolle

Appl Environ Microbiol. 2013 Oct; 79(19): 5907–5917. doi: 10.1128/AEM.02280-13

PMCID:: PMC3811392

Abstract Article PDF–874K

Select item 376324720.

Prerequisites for amplicon pyrosequencing of microbial methanol utilizers in the environment

Steffen Kolb, Astrid Stacheter

Front Microbiol. 2013; 4: 268. Published online 2013 Sep 5. doi: 10.3389/fmicb.2013.00268

PMCID:: PMC3763247

Abstract Article PDF–633K

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PMC Links for Taxonomy (Select 1814) (64)
PMC
txid47871[Organism] (28288)
Protein
PetD, partial (chloroplast) [Aristolochia melanocephala]
PetD, partial (chloroplast) [Aristolochia melanocephala]
gi|1625643058|gb|QCF61421.1|

Protein
Danio rerio COP9 signalosome subunit 3 (cops3), mRNA
Danio rerio COP9 signalosome subunit 3 (cops3), mRNA
gi|53292633|ref|NM_199685.1|

Nucleotide

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