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Items: 1 to 20 of 435

1.
(ADP-ribosyl)hydrolases: structure, function, and biology
Johannes Gregor Matthias Rack, Luca Palazzo, Ivan Ahel
Genes Dev. 2020 Mar 1; 34(5-6): 263–284. doi: 10.1101/gad.334631.119
PMCID:
PMC7050489
AbstractArticlePDF–3.3M
2.
Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)
G. Othoum, S. Prigent, A. Derouiche, L. Shi, A. Bokhari, S. Alamoudi, S. Bougouffa, X. Gao, R. Hoehndorf, S. T. Arold, T. Gojobori, H. Hirt, F. F. Lafi, J. Nielsen, V. B. Bajic, I. Mijakovic, M. Essack
Sci Rep. 2019; 9: 19254. Published online 2019 Dec 17. doi: 10.1038/s41598-019-55726-2
PMCID:
PMC6917714
AbstractArticlePDF–1.9M
3.
Branch site bulge conformations in domain 6 determine functional sugar puckers in group II intron splicing
Raphael Plangger, Michael Andreas Juen, Thomas Philipp Hoernes, Felix Nußbaumer, Johannes Kremser, Elisabeth Strebitzer, David Klingler, Kevin Erharter, Martin Tollinger, Matthias David Erlacher, Christoph Kreutz
Nucleic Acids Res. 2019 Dec 2; 47(21): 11430–11440. Published online 2019 Oct 29. doi: 10.1093/nar/gkz965
PMCID:
PMC6868427
AbstractArticlePDF–2.8M
4.
Isolation and characterization of bacteria associated with the rhizosphere of halophytes (Salsola stocksii and Atriplex amnicola) for production of hydrolytic enzymes
Salma Mukhtar, Samina Mehnaz, Muhammad Sajjad Mirza, Kauser Abdulla Malik
Braz J Microbiol. 2019 Jan; 50(1): 85–97. Published online 2019 Jan 8. doi: 10.1007/s42770-019-00044-y
PMCID:
PMC6863275
AbstractArticlePDF–3.1M
5.
RNA 3D structure prediction guided by independent folding of homologous sequences
Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki
BMC Bioinformatics. 2019; 20: 512. Published online 2019 Oct 22. doi: 10.1186/s12859-019-3120-y
PMCID:
PMC6806525
AbstractArticlePDF–2.3M
6.
Conserved Pseudoknots in lncRNA MEG3 Are Essential for Stimulation of the p53 Pathway
Tina Uroda, Eleni Anastasakou, Annalisa Rossi, Jean-Marie Teulon, Jean-Luc Pellequer, Paolo Annibale, Ombeline Pessey, Alberto Inga, Isabel Chillón, Marco Marcia
Mol Cell. 2019 Sep 5; 75(5): 982–995.e9. doi: 10.1016/j.molcel.2019.07.025
PMCID:
PMC6739425
AbstractArticlePDF–5.1M
7.
Unraveling the Molecular Mechanism of Pre-mRNA Splicing From Multi-Scale Simulations
Lorenzo Casalino, Alessandra Magistrato
Front Mol Biosci. 2019; 6: 62. Published online 2019 Aug 6. doi: 10.3389/fmolb.2019.00062
PMCID:
PMC6691188
ArticlePDF–315K
8.
Understanding the mechanistic basis of non-coding RNA through molecular dynamics simulations
Giulia Palermo, Lorenzo Casalino, Alessandra Magistrato, J. Andrew McCammon
J Struct Biol. Author manuscript; available in PMC 2019 Jul 18.
Published in final edited form as: J Struct Biol. 2019 Jun 1; 206(3): 267–279. Published online 2019 Mar 15. doi: 10.1016/j.jsb.2019.03.004
PMCID:
PMC6637970
AbstractArticlePDF–2.8M
9.
Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data
Sara A. Amin, Elizabeth Chavez, Vladimir Porokhin, Nikhil U. Nair, Soha Hassoun
Microb Cell Fact. 2019; 18: 109. Published online 2019 Jun 13. doi: 10.1186/s12934-019-1156-3
PMCID:
PMC6567437
AbstractArticlePDF–2.7M
10.
Impact of Aquaculture Practices on Intestinal Bacterial Profiles of Pacific Whiteleg Shrimp Litopenaeus vannamei
Angela Landsman, Benoit St-Pierre, Misael Rosales-Leija, Michael Brown, William Gibbons
Microorganisms. 2019 Apr; 7(4): 93. Published online 2019 Mar 30. doi: 10.3390/microorganisms7040093
PMCID:
PMC6518016
AbstractArticlePDF–1.4M
11.
rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
Jan Jelínek, David Hoksza, Jan Hajič, Jan Pešek, Jan Drozen, Tomáš Hladík, Michal Klimpera, Jiří Vohradský, Josef Pánek
Database (Oxford) 2019; 2019: baz047. Published online 2019 Apr 25. doi: 10.1093/database/baz047
PMCID:
PMC6482342
AbstractArticlePDF–8.0M
12.
Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context
Nancy Merino, Heidi S. Aronson, Diana P. Bojanova, Jayme Feyhl-Buska, Michael L. Wong, Shu Zhang, Donato Giovannelli
Front Microbiol. 2019; 10: 780. Published online 2019 Apr 15. doi: 10.3389/fmicb.2019.00780
Correction in:
Front Microbiol. 2019; 10: 1785.
PMCID:
PMC6476344
AbstractArticlePDF–3.3M
13.
An uncharacterized FMAG_01619 protein from Fusobacterium mortiferum ATCC 9817 demonstrates that some bacterial macrodomains can also act as poly-ADP-ribosylhydrolases
Antonio Ginés García-Saura, Rubén Zapata-Pérez, José Francisco Hidalgo, Juana Cabanes, Fernando Gil-Ortiz, Álvaro Sánchez-Ferrer
Sci Rep. 2019; 9: 3230. Published online 2019 Mar 1. doi: 10.1038/s41598-019-39691-4
PMCID:
PMC6397177
AbstractArticlePDF–4.3M
14.
Comparative genomic analysis of eight novel haloalkaliphilic bacteriophages from Lake Elmenteita, Kenya
Juliah Khayeli Akhwale, Manfred Rohde, Christine Rohde, Boyke Bunk, Cathrin Spröer, Hans-Peter Klenk, Hamadi Iddi Boga, Johannes Wittmann
PLoS One. 2019; 14(2): e0212102. Published online 2019 Feb 14. doi: 10.1371/journal.pone.0212102
PMCID:
PMC6375668
AbstractArticlePDF–2.0M
15.
Compact intermediates in RNA folding: Annual Reviews in Biophysics
Sarah A. Woodson
Annu Rev Biophys. Author manuscript; available in PMC 2019 Jan 22.
Published in final edited form as: Annu Rev Biophys. 2010; 39: 61–77. doi: 10.1146/annurev.biophys.093008.131334
PMCID:
PMC6341483
AbstractArticlePDF–977K
16.
The T box riboswitch: tRNA as an effector to modulate gene regulation
Kiel D. Kreuzer, Tina M. Henkin
Microbiol Spectr. Author manuscript; available in PMC 2019 Jan 11.
Published in final edited form as: Microbiol Spectr. 2018 Jul; 6(4): 10.1128/microbiolspec.RWR-0028-2018. doi: 10.1128/microbiolspec.RWR-0028-2018
PMCID:
PMC6329474
AbstractArticlePDF–405K
17.
Self-resistance in Streptomyces, with Special Reference to β-Lactam Antibiotics
Hiroshi Ogawara
Molecules. 2016 May; 21(5): 605. Published online 2016 May 10. doi: 10.3390/molecules21050605
PMCID:
PMC6273383
AbstractArticlePDF–6.8M
18.
Environmentally-driven gene content convergence and the Bacillus phylogeny
Ismael L. Hernández-González, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Álvarez
BMC Evol Biol. 2018; 18: 148. Published online 2018 Oct 3. doi: 10.1186/s12862-018-1261-7
PMCID:
PMC6171248
AbstractArticlePDF–2.4M
19.
Structural accommodations accompanying splicing of a group II intron RNP
Xiaolong Dong, Srivathsan Ranganathan, Guosheng Qu, Carol Lyn Piazza, Marlene Belfort
Nucleic Acids Res. 2018 Sep 19; 46(16): 8542–8556. Published online 2018 May 22. doi: 10.1093/nar/gky416
PMCID:
PMC6144810
AbstractArticlePDF–4.5M
20.
A highly proliferative group IIC intron from Geobacillus stearothermophilus reveals new features of group II intron mobility and splicing
Georg Mohr, Sean Yoon-Seo Kang, Seung Kuk Park, Yidan Qin, Jacob Grohman, Jun Yao, Jennifer L. Stamos, Alan M. Lambowitz
J Mol Biol. Author manuscript; available in PMC 2019 Aug 17.
Published in final edited form as: J Mol Biol. 2018 Aug 17; 430(17): 2760–2783. Published online 2018 Jun 15. doi: 10.1016/j.jmb.2018.06.019
PMCID:
PMC6082379
AbstractArticlePDF–3.0M

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