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Items: 1 to 20 of 28

1.
Chlorophyll a with a farnesyl tail in thermophilic cyanobacteria
Jessica M. Wiwczar, Amy M. LaFountain, Jimin Wang, Harry A. Frank, Gary W. Brudvig
Photosynth Res. Author manuscript; available in PMC 2018 Mar 1.
Published in final edited form as: Photosynth Res. 2017 Nov; 134(2): 175–182. Published online 2017 Jul 24. doi: 10.1007/s11120-017-0425-4
PMCID:
PMC5832022
AbstractArticlePDF–516K
2.
Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics
Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez
Version 3. F1000Res. 2016; 5: 1987. Published online 2017 Jun 27. doi: 10.12688/f1000research.9416.3
PMCID:
PMC5031134
AbstractArticlePDF–5.2M
3.
Different Functions of the Paralogs to the N-Terminal Domain of the Orange Carotenoid Protein in the Cyanobacterium Anabaena sp. PCC 7120
Rocío López-Igual, Adjélé Wilson, Ryan L. Leverenz, Matthew R. Melnicki, Céline Bourcier de Carbon, Markus Sutter, Aiko Turmo, François Perreau, Cheryl A. Kerfeld, Diana Kirilovsky
Plant Physiol. 2016 Jul; 171(3): 1852–1866. Published online 2016 May 13. doi: 10.1104/pp.16.00502
PMCID:
PMC4936580
AbstractArticlePDF–1.4M
4.
Functional Update of the Auxiliary Proteins PsbW, PsbY, HCF136, PsbN, TerC and ALB3 in Maintenance and Assembly of PSII
Magdalena Plöchinger, Serena Schwenkert, Lotta von Sydow, Wolfgang P. Schröder, Jörg Meurer
Front Plant Sci. 2016; 7: 423. Published online 2016 Apr 7. doi: 10.3389/fpls.2016.00423
PMCID:
PMC4823308
AbstractArticlePDF–1.6M
5.
Genome-wide gene order distances support clustering the gram-positive bacteria
Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon
Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785
PMCID:
PMC4299520
AbstractArticlePDF–8.7M
6.
Transient conformational fluctuation of TePixD during a reaction
Kunisato Kuroi, Koji Okajima, Masahiko Ikeuchi, Satoru Tokutomi, Masahide Terazima
Proc Natl Acad Sci U S A. 2014 Oct 14; 111(41): 14764–14769. Published online 2014 Sep 29. doi: 10.1073/pnas.1413222111
PMCID:
PMC4205621
AbstractArticlePDF–1.0M
7.
A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes
Shawn R Starkenburg, Kyungyoon J Kwon, Ramesh K Jha, Cedar McKay, Michael Jacobs, Olga Chertkov, Scott Twary, Gabrielle Rocap, Rose Ann Cattolico
BMC Genomics. 2014; 15: 212. Published online 2014 Mar 19. doi: 10.1186/1471-2164-15-212
PMCID:
PMC3999925
AbstractArticlePDF–2.9M
8.
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés
Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869
PMCID:
PMC3927607
AbstractArticlePDF–2.0M
9.
Reconciliation and local gene tree rearrangement can be of mutual profit
Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry
Algorithms Mol Biol. 2013; 8: 12. Published online 2013 Apr 8. doi: 10.1186/1748-7188-8-12
PMCID:
PMC3871789
AbstractArticlePDF–3.2M
10.
Overexpression of chloroplast NADPH-dependent thioredoxin reductase in Arabidopsis enhances leaf growth and elucidates in vivo function of reductase and thioredoxin domains
Jouni Toivola, Lauri Nikkanen, Käthe M. Dahlström, Tiina A. Salminen, Anna Lepistö, hb Florence Vignols, Eevi Rintamäki
Front Plant Sci. 2013; 4: 389. Published online 2013 Oct 8. doi: 10.3389/fpls.2013.00389
PMCID:
PMC3792407
AbstractArticlePDF–3.7M
11.
A Conserved Rubredoxin Is Necessary for Photosystem II Accumulation in Diverse Oxygenic Photoautotrophs
Robert H. Calderon, José G. García-Cerdán, Alizée Malnoë, Ron Cook, James J. Russell, Cynthia Gaw, Rachel M. Dent, Catherine de Vitry, Krishna K. Niyogi
J Biol Chem. 2013 Sep 13; 288(37): 26688–26696. Published online 2013 Jul 30. doi: 10.1074/jbc.M113.487629
PMCID:
PMC3772215
AbstractArticlePDF–1.4M
12.
Lycopene cyclase paralog CruP protects against reactive oxygen species in oxygenic photosynthetic organisms
Louis M. T. Bradbury, Maria Shumskaya, Oren Tzfadia, Shi-Biao Wu, Edward J. Kennelly, Eleanore T. Wurtzel
Proc Natl Acad Sci U S A. 2012 Jul 3; 109(27): E1888–E1897. Published online 2012 Jun 15. doi: 10.1073/pnas.1206002109
PMCID:
PMC3390835
AbstractArticlePDF–1.1M
13.
Mathematical modeling and comparison of protein size distribution in different plant, animal, fungal and microbial species reveals a negative correlation between protein size and protein number, thus providing insight into the evolution of proteomes
Axel Tiessen, Paulino Pérez-Rodríguez, Luis José Delaye-Arredondo
BMC Res Notes. 2012; 5: 85. Published online 2012 Feb 1. doi: 10.1186/1756-0500-5-85
PMCID:
PMC3296660
AbstractArticlePDF–820K
14.
Structural Refinement of a Key Tryptophan Residue in the BLUF Photoreceptor AppA by Ultraviolet Resonance Raman Spectroscopy
Masashi Unno, Sadato Kikuchi, Shinji Masuda
Biophys J. 2010 May 5; 98(9): 1949–1956. doi: 10.1016/j.bpj.2010.01.007
PMCID:
PMC2862157
AbstractArticlePDF–446K
15.
Signature proteins for the major clades of Cyanobacteria
Radhey S Gupta, Divya W Mathews
BMC Evol Biol. 2010; 10: 24. Published online 2010 Jan 25. doi: 10.1186/1471-2148-10-24
PMCID:
PMC2823733
AbstractArticlePDF–4.1M
16.
Time-resolved spectroscopic studies of the AppA blue-light receptor BLUF domain from Rb. sphaeroides
Vladimira Dragnea, Matthias Waegele, Septimiu Balascuta, Carl Bauer, Bogdan Dragnea
Biochemistry. Author manuscript; available in PMC 2009 Sep 15.
Published in final edited form as: Biochemistry. 2005 Dec 13; 44(49): 15978–15985. doi: 10.1021/bi050839x
PMCID:
PMC2744204
AbstractArticlePDF–1.2M
17.
Characterisation of the paralytic shellfish toxin biosynthesis gene clusters in Anabaena circinalis AWQC131C and Aphanizomenon sp. NH-5
Troco K Mihali, Ralf Kellmann, Brett A Neilan
BMC Biochem. 2009; 10: 8. Published online 2009 Mar 30. doi: 10.1186/1471-2091-10-8
PMCID:
PMC2679770
AbstractArticlePDF–1.1M
18.
Minimum Contradiction Matrices in Whole Genome Phylogenies
Marc Thuillard
Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909
PMCID:
PMC2614196
AbstractArticlePDF–498K
19.
The Methodology Used to Measure Differential Gene Expression Affects the Outcome
Yongzeng Ding, Li Xu, Borko D. Jovanovic, Irene B. Helenowski, David L. Kelly, William J. Catalona, Ximing J. Yang, Michael Pins, Raymond C. Bergan
J Biomol Tech. 2007 Dec; 18(5): 321–330.
PMCID:
PMC2392989
AbstractArticlePDF–945K
20.
Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea
Fengfeng Zhou, Victor Olman, Ying Xu
BMC Genomics. 2008; 9: 36. Published online 2008 Jan 24. doi: 10.1186/1471-2164-9-36
PMCID:
PMC2246112
AbstractArticlePDF–547K

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