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Items: 16

1.
On the reconstruction of the ancestral bacterial genomes in genus Mycobacterium and Brucella
Christophe Guyeux, Bashar Al-Nuaimi, Bassam AlKindy, Jean-François Couchot, Michel Salomon
BMC Syst Biol. 2018; 12(Suppl 5): 100. Published online 2018 Nov 20. doi: 10.1186/s12918-018-0618-2
PMCID:
PMC6245693
AbstractArticlePDF–7.0M
2.
Molecular Investigation of the Transmission Pattern of Brucella suis 3 From Inner Mongolia, China
Zhi-guo Liu, Li-jun Wang, Dong-ri Piao, Miao Wang, Ri-hong Liu, Hong-yan Zhao, Bu-yun Cui, Hai Jiang
Front Vet Sci. 2018; 5: 271. Published online 2018 Oct 29. doi: 10.3389/fvets.2018.00271
PMCID:
PMC6215816
AbstractArticlePDF–1001K
3.
Thermodynamic matchers for the construction of the cuckoo RNA family
Jan Reinkensmeier, Robert Giegerich
RNA Biol. 2015 Feb; 12(2): 197–207. Published online 2015 Mar 16. doi: 10.1080/15476286.2015.1017206
PMCID:
PMC4615179
AbstractArticlePDF–653K
4.
Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm
Supatcha Lertampaiporn, Chinae Thammarongtham, Chakarida Nukoolkit, Boonserm Kaewkamnerdpong, Marasri Ruengjitchatchawalya
Nucleic Acids Res. 2014 Jul 1; 42(11): e93. Published online 2014 Apr 25. doi: 10.1093/nar/gku325
PMCID:
PMC4066759
AbstractArticlePDF–1.1M
5.
Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms
Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés
Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869
PMCID:
PMC3927607
AbstractArticlePDF–2.0M
6.
Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme
Lorenzo Carretero-Paulet, Agnieszka Lipska, Jordi Pérez-Gil, Félix J Sangari, Victor A Albert, Manuel Rodríguez-Concepción
BMC Evol Biol. 2013; 13: 180. Published online 2013 Sep 3. doi: 10.1186/1471-2148-13-180
PMCID:
PMC3847144
AbstractArticlePDF–1.9M
7.
Systematic Analysis of Compositional Order of Proteins Reveals New Characteristics of Biological Functions and a Universal Correlate of Macroevolution
Erez Persi, David Horn
PLoS Comput Biol. 2013 Nov; 9(11): e1003346. Published online 2013 Nov 21. doi: 10.1371/journal.pcbi.1003346
PMCID:
PMC3836704
AbstractArticlePDF–2.3M
8.
Comparative Genomic Analysis of Brucella melitensis Vaccine Strain M5 Provides Insights into Virulence Attenuation
Hai Jiang, Pengcheng Du, Wen Zhang, Heng Wang, Hongyan Zhao, Dongri Piao, Guozhong Tian, Chen Chen, Buyun Cui
PLoS One. 2013; 8(8): e70852. Published online 2013 Aug 14. doi: 10.1371/journal.pone.0070852
PMCID:
PMC3743847
AbstractArticlePDF–1.6M
9.
TIR domain-containing adaptor SARM is a late addition to the ongoing microbe–host dialog
Qing Zhang, Christian M. Zmasek, Xiaohui Cai, Adam Godzik
Dev Comp Immunol. Author manuscript; available in PMC 2012 Apr 1.
Published in final edited form as: Dev Comp Immunol. 2011 Apr; 35(4): 461–468. Published online 2010 Nov 24. doi: 10.1016/j.dci.2010.11.013
PMCID:
PMC3085110
AbstractArticlePDF–138K
10.
N-gram analysis of 970 microbial organisms reveals presence of biological language models
Hatice Ulku Osmanbeyoglu, Madhavi K Ganapathiraju
BMC Bioinformatics. 2011; 12: 12. Published online 2011 Jan 10. doi: 10.1186/1471-2105-12-12
PMCID:
PMC3027111
AbstractArticlePDF–2.8M
11.
Identification of VceA and VceC, two members of the VjbR regulon that are translocated into macrophages by the Brucella Type IV secretion system
Maarten F. de Jong, Yao-Hui Sun, Andreas B. den Hartigh, Jan Maarten van Dijl, Renée M. Tsolis
Mol Microbiol. Author manuscript; available in PMC 2010 Nov 30.
Published in final edited form as: Mol Microbiol. 2008 Dec; 70(6): 1378–1396. Published online 2008 Oct 24. doi: 10.1111/j.1365-2958.2008.06487.x
PMCID:
PMC2993879
AbstractArticlePDF–2.9M
12.
Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference
K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy
PLoS One. 2007; 2(11): e1193. Published online 2007 Nov 21. doi: 10.1371/journal.pone.0001193
PMCID:
PMC2075365
AbstractArticlePDF–295K
13.
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva
Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2
PMCID:
PMC1852316
AbstractArticlePDF–707K
14.
Secondary structure in the target as a confounding factor in synthetic oligomer microarray design
Vladyslava G Ratushna, Jennifer W Weller, Cynthia J Gibas
BMC Genomics. 2005; 6: 31. Published online 2005 Mar 8. doi: 10.1186/1471-2164-6-31
PMCID:
PMC555549
AbstractArticlePDF–1.6M
15.
Hierarchical Scaffolding With Bambus
Mihai Pop, Daniel S. Kosack, Steven L. Salzberg
Genome Res. 2004 Jan; 14(1): 149–159. doi: 10.1101/gr.1536204
PMCID:
PMC314292
AbstractArticlePDF–282K
16.
Nucleotide sequence and expression of the gene encoding the major 25-kilodalton outer membrane protein of Brucella ovis: Evidence for antigenic shift, compared with other Brucella species, due to a deletion in the gene.
A Cloeckaert, J M Verger, M Grayon, M S Zygmunt, O Grépinet
Infect Immun. 1996 Jun; 64(6): 2047–2055. doi: 10.1128/iai.64.6.2047-2055.1996
PMCID:
PMC174035
SummaryPDF–678K

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