PMC Links for Taxonomy (Select 2049040) - PMC

Select item 68561151.

Characterization of Mucosal Dysbiosis of Early Colonic Neoplasia

Bo-young Hong, Takayasu Ideta, Bruno S. Lemos, Yuichi Igarashi, Yuliana Tan, Michael DiSiena, Allen Mo, John W. Birk, Faripour Forouhar, Thomas J. Devers, George M. Weinstock, Daniel W. Rosenberg

NPJ Precis Oncol. 2019; 3: 29. Published online 2019 Nov 14. doi: 10.1038/s41698-019-0101-6

PMCID:: PMC6856115

Abstract Article PDF–2.8M

Select item 68394832.

Bacterial Metabolites Mirror Altered Gut Microbiota Composition in Patients with Parkinson’s Disease

Sebastiaan P. van Kessel, Sahar El Aidy

J Parkinsons Dis. 2019; 9(Suppl 2): S359–S370. Prepublished online 2019 Oct 9. Published online 2019 Oct 30. doi: 10.3233/JPD-191780

PMCID:: PMC6839483

Abstract Article PDF–100K

Select item 67283293.

Metagenomic and culturomic analysis of gut microbiota dysbiosis during Clostridium difficile infection

Sophie Amrane, Marie Hocquart, Pamela Afouda, Edmond Kuete, Thi-Phuong-Thao Pham, Niokhor Dione, Issa Isaac Ngom, Camille Valles, Dipankar Bachar, Didier Raoult, Jean Christophe Lagier

Sci Rep. 2019; 9: 12807. Published online 2019 Sep 5. doi: 10.1038/s41598-019-49189-8

PMCID:: PMC6728329

Abstract Article PDF–2.0M

Select item 63566654.

Metabolomics and Microbiomes as Potential Tools to Evaluate the Effects of the Mediterranean Diet

Qi Jin, Alicen Black, Stefanos N. Kales, Dhiraj Vattem, Miguel Ruiz-Canela, Mercedes Sotos-Prieto

Nutrients. 2019 Jan; 11(1): 207. Published online 2019 Jan 21. doi: 10.3390/nu11010207

PMCID:: PMC6356665

Abstract Article PDF–1.3M

Select item 61217085.

Increased butyrate priming in the gut stalls microbiome associated-gastrointestinal inflammation and hepatic metabolic reprogramming in a mouse model of Gulf War Illness

Ratanesh Kumar Seth, Diana Kimono, Firas Alhasson, Sutapa Sarkar, Muayad Albadrani, Stephen K. Lasley, Ronnie Horner, Patricia Janulewicz, Mitzi Nagarkatti, Prakash Nagarkatti, Kimberly Sullivan, Saurabh Chatterjee

Toxicol Appl Pharmacol. Author manuscript; available in PMC 2019 Jul 1.

Published in final edited form as: Toxicol Appl Pharmacol. 2018 Jul 1; 350: 64–77. Published online 2018 May 9. doi: 10.1016/j.taap.2018.05.006

PMCID:: PMC6121708

Abstract Article PDF–1.4M

Select item 60119926.

Effect of cryopreservation and lyophilization on viability and growth of strict anaerobic human gut microbes

Lea Bircher, Annelies Geirnaert, Frederik Hammes, Christophe Lacroix, Clarissa Schwab

Microb Biotechnol. 2018 Jul; 11(4): 721–733. Published online 2018 Apr 17. doi: 10.1111/1751-7915.13265

PMCID:: PMC6011992

Abstract Article PDF–370K

Select item 57077097.

In Vitro Fermentation Patterns of Rice Bran Components by Human Gut Microbiota

Tung Pham, Brett J. Savary, Keat (Thomas) Teoh, Ming-Hsuan Chen, Anna McClung, Sun-Ok Lee

Nutrients. 2017 Nov; 9(11): 1237. Published online 2017 Nov 12. doi: 10.3390/nu9111237

PMCID:: PMC5707709

Abstract Article PDF–870K

Select item 56726338.

Indoleacrylic acid produced by commensal Peptostreptococcus species suppresses inflammation

Marta Wlodarska, Chengwei Luo, Raivo Kolde, Eva d’Hennezel, John W. Annand, Cortney E. Heim, Philipp Krastel, Esther K. Schmitt, Abdifatah S. Omar, Elizabeth A. Creasey, Ashley L. Garner, Sina Mohammadi, Daniel J. O’Connell, Sahar Abubucker, Timothy D. Arthur, Eric A. Franzosa, Curtis Huttenhower, Leon O. Murphy, Henry J. Haiser, Hera Vlamakis, Jeffrey A. Porter, Ramnik J. Xavier

Cell Host Microbe. Author manuscript; available in PMC 2018 Jul 12.

Published in final edited form as: Cell Host Microbe. 2017 Jul 12; 22(1): 25–37.e6. doi: 10.1016/j.chom.2017.06.007

PMCID:: PMC5672633

Abstract Article PDF–1.2M

Select item 55529279.

Gut microbiome diversity influenced more by the Westernized dietary regime than the body mass index as assessed using effect size statistic

Shannon C. Davis, Jagjit S. Yadav, Stephanie D. Barrow, Boakai K. Robertson

Microbiologyopen. 2017 Aug; 6(4): e00476. Published online 2017 Jul 4. doi: 10.1002/mbo3.476

PMCID:: PMC5552927

Abstract Article PDF–1021K

Select item 534450810.

Dynamic changes of the respiratory microbiota and its relationship to fecal and blood microbiota in healthy young cats

Aida I. Vientós-Plotts, Aaron C. Ericsson, Hansjorg Rindt, Megan E. Grobman, Amber Graham, Kaitlin Bishop, Leah A. Cohn, Carol R. Reinero

PLoS One. 2017; 12(3): e0173818. Published online 2017 Mar 9. doi: 10.1371/journal.pone.0173818

PMCID:: PMC5344508

Abstract Article PDF–1.7M

Select item 505001211.

Meta-analyses of human gut microbes associated with obesity and IBD

William A. Walters, Zech Xu, Rob Knight

FEBS Lett. Author manuscript; available in PMC 2016 Oct 4.

Published in final edited form as: FEBS Lett. 2014 Nov 17; 588(22): 4223–4233. Published online 2014 Oct 13. doi: 10.1016/j.febslet.2014.09.039

PMCID:: PMC5050012

Abstract Article PDF–1.5M

Select item 496129912.

16S rRNA amplicon sequencing dataset for conventionalized and conventionally raised zebrafish larvae

Daniel J. Davis, Elizabeth C. Bryda, Catherine H. Gillespie, Aaron C. Ericsson

Data Brief. 2016 Sep; 8: 938–943. Published online 2016 Jul 5. doi: 10.1016/j.dib.2016.06.057

PMCID:: PMC4961299

Abstract Article PDF–181K

Select item 481770313.

Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia

Marius Vital, Jiarong Gao, Mike Rizzo, Tara Harrison, James M Tiedje

ISME J. 2015 Apr; 9(4): 832–843. Published online 2014 Oct 24. doi: 10.1038/ismej.2014.179

PMCID:: PMC4817703

Abstract Article PDF–2.3M

Select item 475610414.

Intestinal Short Chain Fatty Acids and their Link with Diet and Human Health

David Ríos-Covián, Patricia Ruas-Madiedo, Abelardo Margolles, Miguel Gueimonde, Clara G. de los Reyes-Gavilán, Nuria Salazar

Front Microbiol. 2016; 7: 185. Published online 2016 Feb 17. doi: 10.3389/fmicb.2016.00185

PMCID:: PMC4756104

Abstract Article PDF–671K

Select item 456943215.

Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters

Sachiko Miyake, Sangwan Kim, Wataru Suda, Kenshiro Oshima, Masakazu Nakamura, Takako Matsuoka, Norio Chihara, Atsuko Tomita, Wakiro Sato, Seok-Won Kim, Hidetoshi Morita, Masahira Hattori, Takashi Yamamura

PLoS One. 2015; 10(9): e0137429. Published online 2015 Sep 14. doi: 10.1371/journal.pone.0137429

PMCID:: PMC4569432

Abstract Article PDF–1.4M

Select item 455447416.

Analysis of the key enzymes of butyric and acetic acid fermentation in biogas reactors

Christina Gabris, Frank R Bengelsdorf, Peter Dürre

Microb Biotechnol. 2015 Sep; 8(5): 865–873. Published online 2015 Jun 18. doi: 10.1111/1751-7915.12299

PMCID:: PMC4554474

Abstract Article PDF–316K

Select item 435122917.

Fecal microbes, short chain fatty acids, and colorectal cancer across racial/ethnic groups

Christina M Hester, Venkatakrishna R Jala, Morgan GI Langille, Shahid Umar, K Allen Greiner, Bodduluri Haribabu

World J Gastroenterol. 2015 Mar 7; 21(9): 2759–2769. Published online 2015 Mar 7. doi: 10.3748/wjg.v21.i9.2759

PMCID:: PMC4351229

Abstract Article PDF–1.0M

Select item 397160718.

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis

Vincent B Young, Laura H Raffals, Susan M Huse, Marius Vital, Dongjuan Dai, Patrick D Schloss, Jennifer M Brulc, Dionysios A Antonopoulos, Rose L Arrieta, John H Kwon, K Gautham Reddy, Nathaniel A Hubert, Sharon L Grim, Joseph H Vineis, Sushila Dalal, Hilary G Morrison, A Murat Eren, Folker Meyer, Thomas M Schmidt, James M Tiedje, Eugene B Chang, Mitchell L Sogin

Microbiome. 2013; 1: 9. Published online 2013 Mar 4. doi: 10.1186/2049-2618-1-9

PMCID:: PMC3971607

Abstract Article PDF–681K

Select item 387971419.

The Gut Microbiotassay: a high-throughput qPCR approach combinable with next generation sequencing to study gut microbial diversity

Marie Louise Hermann-Bank, Kerstin Skovgaard, Anders Stockmarr, Niels Larsen, Lars Mølbak

BMC Genomics. 2013; 14: 788. Published online 2013 Nov 14. doi: 10.1186/1471-2164-14-788

PMCID:: PMC3879714

Abstract Article PDF–2.1M

Select item 381291120.

Microbiota Separation and C-reactive protein Elevation in Treatment Naïve Pediatric Granulomatous Crohn Disease

Richard Kellermayer, Sabina A. V. Mir, Dorottya Nagy-Szakal, Stephen B. Cox, Scot E. Dowd, Jess L. Kaplan, Yan Sun, Sahna Reddy, Jiri Bronsky, Harland S. Winter

J Pediatr Gastroenterol Nutr. Author manuscript; available in PMC 2013 Oct 30.

Published in final edited form as: J Pediatr Gastroenterol Nutr. 2012 Sep; 55(3): 10.1097/MPG.0b013e3182617c16. doi: 10.1097/MPG.0b013e3182617c16

PMCID:: PMC3812911

Abstract Article PDF–425K

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