PMC Links for Taxonomy (Select 243275) - PMC

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Items: 19

Select item 47125521.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Rosalinda D’Amore, Umer Zeeshan Ijaz, Melanie Schirmer, John G. Kenny, Richard Gregory, Alistair C. Darby, Migun Shakya, Mircea Podar, Christopher Quince, Neil Hall

BMC Genomics. 2016; 17: 55. Published online 2016 Jan 14. doi: 10.1186/s12864-015-2194-9

PMCID:: PMC4712552

Abstract Article PDF–1.2M

Select item 39276072.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 39149903.

Transcriptional Responses of Treponema denticola to Other Oral Bacterial Species

Juni Sarkar, Ian H. McHardy, Emil J. Simanian, Wenyuan Shi, Renate Lux

PLoS One. 2014; 9(2): e88361. Published online 2014 Feb 5. doi: 10.1371/journal.pone.0088361

PMCID:: PMC3914990

Abstract Article PDF–242K

Select item 30739124.

Molecular evolution of urea amidolyase and urea carboxylase in fungi

Pooja K Strope, Kenneth W Nickerson, Steven D Harris, Etsuko N Moriyama

BMC Evol Biol. 2011; 11: 80. Published online 2011 Mar 29. doi: 10.1186/1471-2148-11-80

PMCID:: PMC3073912

Abstract Article PDF–549K

Select item 26141965.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Abstract Article PDF–498K

Select item 20753656.

Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference

K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy

PLoS One. 2007; 2(11): e1193. Published online 2007 Nov 21. doi: 10.1371/journal.pone.0001193

PMCID:: PMC2075365

Abstract Article PDF–295K

Select item 18523167.

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva

Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2

PMCID:: PMC1852316

Abstract Article PDF–707K

Select item 12422148.

A computational method to predict genetically encoded rare amino acids in proteins

Barnali N Chaudhuri, Todd O Yeates

Genome Biol. 2005; 6(9): R79. Published online 2005 Aug 31. doi: 10.1186/gb-2005-6-9-r79

PMCID:: PMC1242214

Abstract Article PDF–1.0M

Select item 3137829.

Isolation and characterization of the Treponema denticola prtA gene coding for chymotrypsinlike protease activity and detection of a closely linked gene encoding PZ-PLGPA-hydrolyzing activity.

X C Que, H K Kuramitsu

Infect Immun. 1990 Dec; 58(12): 4099–4105. doi: 10.1128/iai.58.12.4099-4105.1990

PMCID:: PMC313782

Summary Page Browse PDF–1.6M

Select item 30321010.

An endo-acting proline-specific oligopeptidase from Treponema denticola ATCC 35405: evidence of hydrolysis of human bioactive peptides.

P L Mäkinen, K K Mäkinen, S A Syed

Infect Immun. 1994 Nov; 62(11): 4938–4947. doi: 10.1128/iai.62.11.4938-4947.1994

PMCID:: PMC303210

Summary Page Browse PDF–2.1M

Select item 25963411.

Isolation of a chymotrypsinlike enzyme from Treponema denticola.

V J Uitto, D Grenier, E C Chan, B C McBride

Infect Immun. 1988 Oct; 56(10): 2717–2722. doi: 10.1128/iai.56.10.2717-2722.1988

PMCID:: PMC259634

Summary Page Browse PDF–1.2M

Select item 25902112.

Sulfhydryl-dependent attachment of Treponema denticola to laminin and other proteins.

M Haapasalo, U Singh, B C McBride, V J Uitto

Infect Immun. 1991 Nov; 59(11): 4230–4237. doi: 10.1128/iai.59.11.4230-4237.1991

PMCID:: PMC259021

Summary Page Browse PDF–1.9M

Select item 17797013.

Sequence analysis, expression, and binding activity of recombinant major outer sheath protein (Msp) of Treponema denticola.

J C Fenno, K H Müller, B C McBride

J Bacteriol. 1996 May; 178(9): 2489–2497. doi: 10.1128/jb.178.9.2489-2497.1996

PMCID:: PMC177970

Summary PDF–420K

Select item 17611414.

gamma-Glutamyltransferase from the outer cell envelope of Treponema denticola ATCC 35405.

P L Mäkinen, K K Mäkinen

Infect Immun. 1997 Feb; 65(2): 685–691. doi: 10.1128/iai.65.2.685-691.1997

PMCID:: PMC176114

Summary PDF–231K

Select item 17528215.

Genetic and transcriptional analysis of flgB flagellar operon constituents in the oral spirochete Treponema denticola and their heterologous expression in enteric bacteria.

H F Heinzerling, M Olivares, R A Burne

Infect Immun. 1997 Jun; 65(6): 2041–2051. doi: 10.1128/iai.65.6.2041-2051.1997

PMCID:: PMC175282

Summary PDF–741K

Select item 17450516.

Characterization of the Treponema denticola prtP gene encoding a prolyl-phenylalanine-specific protease (dentilisin).

K Ishihara, T Miura, H K Kuramitsu, K Okuda

Infect Immun. 1996 Dec; 64(12): 5178–5186. doi: 10.1128/iai.64.12.5178-5186.1996

PMCID:: PMC174505

Summary PDF–900K

Select item 17382517.

Proline iminopeptidase from the outer cell envelope of the human oral spirochete Treponema denticola ATCC 35405.

K K Mäkinen, C Y Chen, P L Mäkinen

Infect Immun. 1996 Mar; 64(3): 702–708. doi: 10.1128/iai.64.3.702-708.1996

PMCID:: PMC173825

Summary PDF–265K

Select item 17349518.

Role of the chymotrypsin-like membrane-associated proteinase from Treponema denticola ATCC 35405 in inactivation of bioactive peptides.

P L Mäkinen, K K Mäkinen, S A Syed

Infect Immun. 1995 Sep; 63(9): 3567–3575. doi: 10.1128/iai.63.9.3567-3575.1995

PMCID:: PMC173495

Summary PDF–292K

Select item 17312619.

Cloning and expression of a neutral phosphatase gene from Treponema denticola.

K Ishihara, H K Kuramitsu

Infect Immun. 1995 Apr; 63(4): 1147–1152. doi: 10.1128/iai.63.4.1147-1152.1995

PMCID:: PMC173126

Summary PDF–260K

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