PMC Links for Taxonomy (Select 272558) - PMC

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Select item 53972521.

An RNA-based fluorescent biosensor for high-throughput analysis of the cGAS-cGAMP-STING pathway

Debojit Bose, Yichi Su, Assaf Marcus, David H. Raulet, Ming C. Hammond

Cell Chem Biol. Author manuscript; available in PMC 2017 Dec 22.

Published in final edited form as: Cell Chem Biol. 2016 Dec 22; 23(12): 1539–1549. Published online 2016 Nov 23. doi: 10.1016/j.chembiol.2016.10.014

PMCID:: PMC5397252

Abstract Article PDF–1.2M

Select item 50311342.

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez

Version 3. F1000Res. 2016; 5: 1987. Published online 2017 Jun 27. doi: 10.12688/f1000research.9416.3

PMCID:: PMC5031134

Abstract Article PDF–5.2M

Select item 46749003.

How genome complexity can explain the difficulty of aligning reads to genomes

Vinhthuy Phan, Shanshan Gao, Quang Tran, Nam S Vo

BMC Bioinformatics. 2015; 16(Suppl 17): S3. Published online 2015 Dec 7. doi: 10.1186/1471-2105-16-S17-S3

PMCID:: PMC4674900

Abstract Article PDF–2.1M

Select item 45551714.

Whole Genome Phylogeny of Bacillus by Feature Frequency Profiles (FFP)

Aisuo Wang, Gavin J. Ash

Sci Rep. 2015; 5: 13644. Published online 2015 Sep 1. doi: 10.1038/srep13644

PMCID:: PMC4555171

Abstract Article PDF–3.5M

Select item 42995205.

Genome-wide gene order distances support clustering the gram-positive bacteria

Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon

Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785

PMCID:: PMC4299520

Abstract Article PDF–8.7M

Select item 42864806.

Structural principles of CRISPR RNA processing

Hong Li

Structure. Author manuscript; available in PMC 2016 Jan 6.

Published in final edited form as: Structure. 2015 Jan 6; 23(1): 13–20. Published online 2014 Nov 26. doi: 10.1016/j.str.2014.10.006

PMCID:: PMC4286480

Abstract Article PDF–1.0M

Select item 39276077.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 39232508.

Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community

John M Gladden, Joshua I Park, Jessica Bergmann, Vimalier Reyes-Ortiz, Patrik D’haeseleer, Betania F Quirino, Kenneth L Sale, Blake A Simmons, Steven W Singer

Biotechnol Biofuels. 2014; 7: 15. Published online 2014 Jan 29. doi: 10.1186/1754-6834-7-15

PMCID:: PMC3923250

Abstract Article PDF–332K

Select item 38471449.

Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

Lorenzo Carretero-Paulet, Agnieszka Lipska, Jordi Pérez-Gil, Félix J Sangari, Victor A Albert, Manuel Rodríguez-Concepción

BMC Evol Biol. 2013; 13: 180. Published online 2013 Sep 3. doi: 10.1186/1471-2148-13-180

PMCID:: PMC3847144

Abstract Article PDF–1.9M

Select item 322890510.

The genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4

Benjamin Janto, Azad Ahmed, Masahiro Ito, Jun Liu, David B. Hicks, Sarah Pagni, Oliver J. Fackelmayer, Terry-Ann Smith, Joshua Earl, Liam D.H. Elbourne, Karl Hassan, Ian T. Paulsen, Anne-Brit Kolstø, Nicolas J. Tourasse, Garth D. Ehrlich, Robert Boissy, D. Mack Ivey, Gang Li, Yanfen Xue, Yanhe Ma, Fen Z. Hu, Terry A. Krulwich

Environ Microbiol. Author manuscript; available in PMC 2012 Dec 1.

Published in final edited form as: Environ Microbiol. 2011 Dec; 13(12): 3289–3309. Published online 2011 Sep 27. doi: 10.1111/j.1462-2920.2011.02591.x

PMCID:: PMC3228905

Abstract Article PDF–1.6M

Select item 317173011.

Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group

Timothy R Schmidt, Edgar J Scott, II, David W Dyer

BMC Genomics. 2011; 12: 430. Published online 2011 Aug 24. doi: 10.1186/1471-2164-12-430

PMCID:: PMC3171730

Abstract Article PDF–959K

Select item 311965412.

A Voltage-Gated H⁺ Channel Underlying pH Homeostasis in Calcifying Coccolithophores

Alison R. Taylor, Abdul Chrachri, Glen Wheeler, Helen Goddard, Colin Brownlee

PLoS Biol. 2011 Jun; 9(6): e1001085. Published online 2011 Jun 21. doi: 10.1371/journal.pbio.1001085

PMCID:: PMC3119654

Abstract Article PDF–1.0M

Select item 309810813.

A novel scoring function for discriminating hyperthermophilic and mesophilic proteins with application to predicting relative thermostability of protein mutants

Yunqi Li, C Russell Middaugh, Jianwen Fang

BMC Bioinformatics. 2010; 11: 62. Published online 2010 Jan 28. doi: 10.1186/1471-2105-11-62

PMCID:: PMC3098108

Abstract Article PDF–1.3M

Select item 296312314.

Functional Promiscuity of Homologues of the Bacterial ArsA ATPases

Rostislav Castillo, Milton H. Saier, Jr.

Int J Microbiol. 2010; 2010: 187373. Published online 2010 Oct 20. doi: 10.1155/2010/187373

PMCID:: PMC2963123

Abstract Article PDF–1.5M

Select item 292959915.

The Mechanisms of Human Hotdog-fold Thioesterase 2 (hTHEM2) Substrate Recognition and Catalysis Illuminated by a Structure and Function Based Analysis

Jian Cao, Hang Xu, Hong Zhao, Weimin Gong, Debra Dunaway-Mariano

Biochemistry. Author manuscript; available in PMC 2010 Aug 30.

Published in final edited form as: Biochemistry. 2009 Feb 17; 48(6): 1293–1304. doi: 10.1021/bi801879z

PMCID:: PMC2929599

Abstract Article PDF–1.8M

Select item 274102316.

The multiple phenylpropene synthases in both Clarkia breweri and Petunia hybrida represent two distinct protein lineages

Takao Koeduka, Gordon V. Louie, Irina Orlova, Christine M. Kish, Mwafaq Ibdah, Curtis G. Wilkerson, Marianne E. Bowman, Thomas J. Baiga, Joseph P. Noel, Natalia Dudareva, Eran Pichersky

Plant J. Author manuscript; available in PMC 2009 Sep 10.

Published in final edited form as: Plant J. 2008 May; 54(3): 362–374. Published online 2008 Jan 16. doi: 10.1111/j.1365-313X.2008.03412.x