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Items: 9

1.
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
Léa Siegwald, Hélène Touzet, Yves Lemoine, David Hot, Christophe Audebert, Ségolène Caboche
PLoS One. 2017; 12(1): e0169563. Published online 2017 Jan 4. doi: 10.1371/journal.pone.0169563
PMCID:
PMC5215245
AbstractArticlePDF–3.1M
2.
Clustering metagenomic sequences with interpolated Markov models
David R Kelley, Steven L Salzberg
BMC Bioinformatics. 2010; 11: 544. Published online 2010 Nov 2. doi: 10.1186/1471-2105-11-544
PMCID:
PMC3098094
AbstractArticlePDF–754K
3.
Phylogenetic Distribution and Evolutionary History of Bacterial DEAD-Box Proteins
Varinia López-Ramírez, Luis D. Alcaraz, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Álvarez
J Mol Evol. 2011; 72(4): 413–431. Published online 2011 Mar 25. doi: 10.1007/s00239-011-9441-8
PMCID:
PMC3093544
AbstractArticlePDF–9.0M
4.
Assessing the Quality of Whole Genome Alignments in Bacteria
Firas Swidan, Ron Shamir
Adv Bioinformatics. 2009; 2009: 749027. Published online 2009 Nov 15. doi: 10.1155/2009/749027
PMCID:
PMC2798158
AbstractArticlePDF–608K
5.
A novel DNA sequence periodicity decodes nucleosome positioning
Kaifu Chen, Qingshu Meng, Lina Ma, Qingyou Liu, Petrus Tang, Chungshung Chiu, Songnian Hu, Jun Yu
Nucleic Acids Res. 2008 Nov; 36(19): 6228–6236. Published online 2008 Oct 1. doi: 10.1093/nar/gkn626
PMCID:
PMC2577358
AbstractArticlePDF–520K
6.
Domain annotation of trimeric autotransporter adhesins—daTAA
Pawel Szczesny, Andrei Lupas
Bioinformatics. 2008 May 15; 24(10): 1251–1256. Published online 2008 Apr 8. doi: 10.1093/bioinformatics/btn118
PMCID:
PMC2373917
AbstractArticlePDF–375K
7.
Identification of Prophages in Bacterial Genomes by Dinucleotide Relative Abundance Difference
K. V. Srividhya, V. Alaguraj, G. Poornima, Dinesh Kumar, G. P. Singh, L. Raghavenderan, A. V. S. K. Mohan Katta, Preeti Mehta, S. Krishnaswamy
PLoS One. 2007; 2(11): e1193. Published online 2007 Nov 21. doi: 10.1371/journal.pone.0001193
PMCID:
PMC2075365
AbstractArticlePDF–295K
8.
Parallel dimerization of a PrrC-anticodon nuclease region implicated in tRNALys recognition
Daniel Klaiman, Michal Amitsur, Shani Blanga-Kanfi, Michal Chai, Darrell R. Davis, Gabriel Kaufmann
Nucleic Acids Res. 2007 Jul; 35(14): 4704–4714. Published online 2007 Jun 29. doi: 10.1093/nar/gkm494
PMCID:
PMC1950546
AbstractArticlePDF–11M
9.
PrrC-anticodon nuclease: functional organization of a prototypical bacterial restriction RNase
Shani Blanga-Kanfi, Michal Amitsur, Abdussalam Azem, Gabriel Kaufmann
Nucleic Acids Res. 2006; 34(11): 3209–3219. Published online 2006 Jun 21. doi: 10.1093/nar/gkl415
PMCID:
PMC1484252
AbstractArticlePDF–3.4M

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