PMC Links for Taxonomy (Select 328301) - PMC

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Items: 19

Select item 70385951.

New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters

Stefano Campanaro, Laura Treu, Luis M. Rodriguez-R, Adam Kovalovszki, Ryan M. Ziels, Irena Maus, Xinyu Zhu, Panagiotis G. Kougias, Arianna Basile, Gang Luo, Andreas Schlüter, Konstantinos T. Konstantinidis, Irini Angelidaki

Biotechnol Biofuels. 2020; 13: 25. Published online 2020 Feb 24. doi: 10.1186/s13068-020-01679-y

PMCID:: PMC7038595

Abstract Article PDF–11M

Select item 69343902.

Pretreatment of Lignocellulosic Biomass with Cattle Rumen Fluid for Methane Production: Fate of Added Rumen Microbes and Indigenous Microbes of Methane Seed Sludge

Yasunori Baba, Yu Matsuki, Shuhei Takizawa, Yoshihisa Suyama, Chika Tada, Yasuhiro Fukuda, Masanori Saito, Yutaka Nakai

Microbes Environ. 2019 Dec; 34(4): 421–428. Published online 2019 Dec 27. doi: 10.1264/jsme2.ME19113

PMCID:: PMC6934390

Abstract Article PDF–2.8M

Select item 66879393.

Elucidating Syntrophic Butyrate-Degrading Populations in Anaerobic Digesters Using Stable-Isotope-Informed Genome-Resolved Metagenomics

Ryan M. Ziels, Masaru K. Nobu, Diana Z. Sousa

mSystems. 2019 Jul-Aug; 4(4): e00159-19. Published online 2019 Aug 6. doi: 10.1128/mSystems.00159-19

PMCID:: PMC6687939

Abstract Article PDF–2.0M

Select item 63599014.

Kelpie: generating full-length ‘amplicons’ from whole-metagenome datasets

Paul Greenfield, Nai Tran-Dinh, David Midgley

PeerJ. 2019; 6: e6174. Published online 2019 Jan 30. doi: 10.7717/peerj.6174

PMCID:: PMC6359901

Abstract Article PDF–981K

Select item 60187985.

Syntrophic pathways for microbial mercury methylation

Ri-Qing Yu, John R. Reinfelder, Mark E. Hines, Tamar Barkay

ISME J. 2018 Jul; 12(7): 1826–1835. Published online 2018 Mar 29. doi: 10.1038/s41396-018-0106-0

PMCID:: PMC6018798

Abstract Article PDF–722K

Select item 59464926.

Bioreactor microbial ecosystems with differentiated methanogenic phenol biodegradation and competitive metabolic pathways unraveled with genome-resolved metagenomics

Feng Ju, Yubo Wang, Tong Zhang

Biotechnol Biofuels. 2018; 11: 135. Published online 2018 May 11. doi: 10.1186/s13068-018-1136-6

PMCID:: PMC5946492

Abstract Article PDF–1.6M

Select item 58613037.

Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD⁺ (Rnf) as Electron Acceptors: A Historical Review

Wolfgang Buckel, Rudolf K. Thauer

Front Microbiol. 2018; 9: 401. Published online 2018 Mar 14. doi: 10.3389/fmicb.2018.00401

PMCID:: PMC5861303

Abstract Article PDF–1.7M

Select item 57369138.

Homoacetogenesis in Deep-Sea Chloroflexi, as Inferred by Single-Cell Genomics, Provides a Link to Reductive Dehalogenation in Terrestrial Dehalococcoidetes

Holly L. Sewell, Anne-Kristin Kaster, Alfred M. Spormann

mBio. 2017 Nov-Dec; 8(6): e02022-17. Published online 2017 Dec 19. doi: 10.1128/mBio.02022-17

Correction in:: mBio. 2018 Mar-Apr; 9(2): e00312-18.

PMCID:: PMC5736913

Abstract Article PDF–2.5M

Select item 53710699.

Genomics and Metagenomics in Microbial Ecology: Recent Advances and Challenges

Takashi Narihiro, Yoichi Kamagata

Microbes Environ. 2017 Mar; 32(1): 1–4. doi: 10.1264/jsme2.ME3201rh

PMCID:: PMC5371069

Article PDF–451K

Select item 511304610.

Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii

Shahid Manzoor, Erik Bongcam-Rudloff, Anna Schnürer, Bettina Müller

PLoS One. 2016; 11(11): e0166520. Published online 2016 Nov 16. doi: 10.1371/journal.pone.0166520

PMCID:: PMC5113046

Abstract Article PDF–4.5M

Select item 502916611.

Peat: home to novel syntrophic species that feed acetate- and hydrogen-scavenging methanogens

Oliver Schmidt, Linda Hink, Marcus A Horn, Harold L Drake

ISME J. 2016 Aug; 10(8): 1954–1966. Published online 2016 Jan 15. doi: 10.1038/ismej.2015.256

PMCID:: PMC5029166

Abstract Article PDF–818K

Select item 491216012.

Microbes in the Water Infrastructure: Underpinning Our Society

Takashi Narihiro

Microbes Environ. 2016 Jun; 31(2): 89–92. doi: 10.1264/jsme2.ME3102rh

PMCID:: PMC4912160

Article PDF–265K

Select item 476583813.

Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus

Gaurav Sharma, Tarun Narwani, Srikrishna Subramanian

PLoS One. 2016; 11(2): e0148593. Published online 2016 Feb 22. doi: 10.1371/journal.pone.0148593

PMCID:: PMC4765838

Abstract Article PDF–9.1M

Select item 430393914.

Molecular analysis of the benthos microbial community in Zavarzin thermal spring (Uzon Caldera, Kamchatka, Russia)

Alexey S Rozanov, Alla V Bryanskaya, Tatiana K Malup, Irina A Meshcheryakova, Elena V Lazareva, Oksana P Taran, Timofey V Ivanisenko, Vladimir A Ivanisenko, Sergey M Zhmodik, Nikolay A Kolchanov, Sergey E Peltek

BMC Genomics. 2014; 15(Suppl 12): S12. Published online 2014 Dec 19. doi: 10.1186/1471-2164-15-S12-S12

PMCID:: PMC4303939

Abstract Article PDF–2.2M

Select item 423739015.

Progressive Degradation of Crude Oil n-Alkanes Coupled to Methane Production under Mesophilic and Thermophilic Conditions

Lei Cheng, Shengbao Shi, Qiang Li, Jianfa Chen, Hui Zhang, Yahai Lu

PLoS One. 2014; 9(11): e113253. Published online 2014 Nov 19. doi: 10.1371/journal.pone.0113253

PMCID:: PMC4237390

Abstract Article PDF–1.3M

Select item 417864516.

Syntrophs Dominate Sequences Associated with the Mercury Methylation-Related Gene hgcA in the Water Conservation Areas of the Florida Everglades

Hee-Sung Bae, Forrest E. Dierberg, Andrew Ogram

Appl Environ Microbiol. 2014 Oct; 80(20): 6517–6526. doi: 10.1128/AEM.01666-14

PMCID:: PMC4178645

Abstract Article PDF–1.2M

Select item 391648417.

Draft Genome Sequence of Syntrophorhabdus aromaticivorans Strain UI, a Mesophilic Aromatic Compound-Degrading Syntroph

Masaru K. Nobu, Takashi Narihiro, Hideyuki Tamaki, Yan-Ling Qiu, Yuji Sekiguchi, Tanja Woyke, Lynne Goodwin, Karen W. Davenport, Yoichi Kamagata, Wen-Tso Liu

Genome Announc. 2014 Jan-Feb; 2(1): e01064-13. Published online 2014 Feb 6. doi: 10.1128/genomeA.01064-13