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Select item 70058431.

FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies

Arkadiy I. Garber, Kenneth H. Nealson, Akihiro Okamoto, Sean M. McAllister, Clara S. Chan, Roman A. Barco, Nancy Merino

Front Microbiol. 2020; 11: 37. Published online 2020 Jan 31. doi: 10.3389/fmicb.2020.00037

PMCID:: PMC7005843

Abstract Article PDF–5.7M

Select item 69086422.

Metagenomic and chemical characterization of soil cobalamin production

Xinda Lu, Katherine R. Heal, Anitra E. Ingalls, Andrew C. Doxey, Josh D. Neufeld

ISME J. 2020 Jan; 14(1): 53–66. Published online 2019 Sep 6. doi: 10.1038/s41396-019-0502-0

PMCID:: PMC6908642

Abstract Article PDF–1.0M

Select item 68882373.

Effects of Temperature on the Characteristics of Nitrogen Removal and Microbial Community in Post Solid-Phase Denitrification Biofilter Process

Qian Zhang, Xue Chen, Wandong Luo, Heng Wu, Xiangyang Liu, Wang Chen, Jianhong Tang, Lijie Zhang

Int J Environ Res Public Health. 2019 Nov; 16(22): 4466. Published online 2019 Nov 13. doi: 10.3390/ijerph16224466

PMCID:: PMC6888237

Abstract Article PDF–2.8M

Select item 68844194.

A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria

Holger Daims, Sebastian Lücker, Michael Wagner

Trends Microbiol. Author manuscript; available in PMC 2019 Nov 29.

Published in final edited form as: Trends Microbiol. 2016 Sep 1; 24(9): 699–712. Published online 2016 Jun 6. doi: 10.1016/j.tim.2016.05.004

PMCID:: PMC6884419

Abstract Article PDF–1.6M

Select item 68320185.

Oral Microbiome Alterations Associated with Early Childhood Caries Highlight the Importance of Carbohydrate Metabolic Activities

Yuan Wang, Sa Wang, Chunyan Wu, Xi Chen, Zhuhui Duan, Qian Xu, Wen Jiang, Lei Xu, Tingting Wang, Lingkai Su, Ying Wang, Yadong Chen, Jie Zhang, Yun Huang, Suman Tong, Cheng Zhou, Shuli Deng, Nan Qin

mSystems. 2019 Nov-Dec; 4(6): e00450-19. Published online 2019 Nov 5. doi: 10.1128/mSystems.00450-19

PMCID:: PMC6832018

Abstract Article PDF–3.3M

Select item 68211426.

Comparative metatranscriptome analysis revealed broad response of microbial communities in two soil types, agriculture versus organic soil

Pushpender Kumar Sharma, Vinay Sharma, Shailesh Sharma, Garima Bhatia, Kashmir Singh, Rohit Sharma

J Genet Eng Biotechnol. 2019 Dec; 17: 6. Published online 2019 Oct 14. doi: 10.1186/s43141-019-0006-3

PMCID:: PMC6821142

Abstract Article PDF–1.4M

Select item 67642477.

16S rRNA Gene Amplicon Based Metagenomic Signatures of Rhizobiome Community in Rice Field During Various Growth Stages

Madangchanok Imchen, Ranjith Kumavath, Aline B. M. Vaz, Aristóteles Góes-Neto, Debmalya Barh, Preetam Ghosh, Natalia Kozyrovska, Olga Podolich, Vasco Azevedo

Front Microbiol. 2019; 10: 2103. Published online 2019 Sep 20. doi: 10.3389/fmicb.2019.02103

PMCID:: PMC6764247

Abstract Article PDF–9.8M

Select item 66698148.

A potential central role of Thaumarchaeota in N-Cycling in a semi-arid environment, Fort Stanton Cave, Snowy River passage, New Mexico, USA

Jason C Kimble, Ara S Winter, Michael N Spilde, Robert L Sinsabaugh, Diana E Northup

FEMS Microbiol Ecol. 2018 Nov; 94(11): fiy173. Published online 2018 Aug 25. doi: 10.1093/femsec/fiy173

PMCID:: PMC6669814

Abstract Article PDF–16M

Select item 66501599.

Comammox Functionality Identified in Diverse Engineered Biological Wastewater Treatment Systems

Medini K. Annavajhala, Vikram Kapoor, Jorge Santo-Domingo, Kartik Chandran

Environ Sci Technol Lett. Author manuscript; available in PMC 2019 Jul 23.

Published in final edited form as: Environ Sci Technol Lett. 2018; 5(2): 110–116. doi: 10.1021/acs.estlett.7b00577

PMCID:: PMC6650159

Abstract Article PDF–1.1M

Select item 664078610.

Implicit Analytic Solution of Michaelis–Menten–Monod Kinetics

Federico Maggi, Daniele la Cecilia

ACS Omega. 2016 Nov 30; 1(5): 894–898. Published online 2016 Nov 11. doi: 10.1021/acsomega.6b00174

PMCID:: PMC6640786

Abstract Article PDF–949K

Select item 649574711.

Low Temperature and Neutral pH Define “Candidatus Nitrotoga sp.” as a Competitive Nitrite Oxidizer in Coculture with Nitrospira defluvii

Simone Wegen, Boris Nowka, Eva Spieck

Appl Environ Microbiol. 2019 May 1; 85(9): e02569-18. Prepublished online 2019 Mar 1. Published online 2019 Apr 18. doi: 10.1128/AEM.02569-18

PMCID:: PMC6495747

Abstract Article PDF–862K

Select item 639379312.

Parts-Prospecting for a High-Efficiency Thiamin Thiazole Biosynthesis Pathway

Jiayi Sun, Cindy L. Sigler, Guillaume A.W. Beaudoin, Jaya Joshi, Jenelle A. Patterson, Keun H. Cho, Maria A. Ralat, Jesse F. Gregory, III, David G. Clark, Zhanao Deng, Thomas A. Colquhoun, Andrew D. Hanson

Plant Physiol. 2019 Mar; 179(3): 958–968. Published online 2018 Oct 10. doi: 10.1104/pp.18.01085

PMCID:: PMC6393793

Abstract Article PDF–1.3M

Select item 632749413.

CoMetGeNe: mining conserved neighborhood patterns in metabolic and genomic contexts

Alexandra Zaharia, Bernard Labedan, Christine Froidevaux, Alain Denise

BMC Bioinformatics. 2019; 20: 19. Published online 2019 Jan 10. doi: 10.1186/s12859-018-2542-2

PMCID:: PMC6327494

Abstract Article PDF–1.5M

Select item 629902214.

Microbial Synthesis and Transformation of Inorganic and Organic Chlorine Compounds

Siavash Atashgahi, Martin G. Liebensteiner, Dick B. Janssen, Hauke Smidt, Alfons J. M. Stams, Detmer Sipkema

Front Microbiol. 2018; 9: 3079. Published online 2018 Dec 12. doi: 10.3389/fmicb.2018.03079

PMCID:: PMC6299022

Abstract Article PDF–1.0M

Select item 619456215.

In silico characterization of a novel putative aerotaxis chemosensory system in the myxobacterium, Corallococcus coralloides

Gaurav Sharma, Rebecca Parales, Mitchell Singer

BMC Genomics. 2018; 19: 757. Published online 2018 Oct 19. doi: 10.1186/s12864-018-5151-6

PMCID:: PMC6194562

Abstract Article PDF–4.0M

Select item 619405816.

Convergent evolution of unusual complex I homologs with increased proton pumping capacity: energetic and ecological implications

Grayson L. Chadwick, James Hemp, Woodward W. Fischer, Victoria J. Orphan

ISME J. 2018 Nov; 12(11): 2668–2680. Published online 2018 Jul 10. doi: 10.1038/s41396-018-0210-1

PMCID:: PMC6194058

Abstract Article PDF–4.9M

Select item 613723917.

Investigating the Composition and Metabolic Potential of Microbial Communities in Chocolate Pots Hot Springs

Nathaniel W. Fortney, Shaomei He, Brandon J. Converse, Eric S. Boyd, Eric E. Roden

Front Microbiol. 2018; 9: 2075. Published online 2018 Sep 7. doi: 10.3389/fmicb.2018.02075

PMCID:: PMC6137239

Abstract Article PDF–3.2M

Select item 613120018.

The Genomic Potentials of NOB and Comammox Nitrospira in River Sediment Are Impacted by Native Freshwater Mussels

Ellen M. Black, Craig L. Just

Front Microbiol. 2018; 9: 2061. Published online 2018 Sep 4. doi: 10.3389/fmicb.2018.02061

PMCID:: PMC6131200

Abstract Article PDF–2.4M

Select item 605339119.

Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota

Zheng-Shuang Hua, Yan-Ni Qu, Qiyun Zhu, En-Min Zhou, Yan-Ling Qi, Yi-Rui Yin, Yang-Zhi Rao, Ye Tian, Yu-Xian Li, Lan Liu, Cindy J. Castelle, Brian P. Hedlund, Wen-Sheng Shu, Rob Knight, Wen-Jun Li

Nat Commun. 2018; 9: 2832. Published online 2018 Jul 19. doi: 10.1038/s41467-018-05284-4

PMCID:: PMC6053391

Abstract Article PDF–3.6M

Select item 605095720.

Characterization of the First “Candidatus Nitrotoga” Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria

Katharina Kitzinger, Hanna Koch, Sebastian Lücker, Christopher J. Sedlacek, Craig Herbold, Jasmin Schwarz, Anne Daebeler, Anna J. Mueller, Michael Lukumbuzya, Stefano Romano, Nikolaus Leisch, Søren Michael Karst, Rasmus Kirkegaard, Mads Albertsen, Per Halkjær Nielsen, Michael Wagner, Holger Daims

mBio. 2018 Jul-Aug; 9(4): e01186-18. Published online 2018 Jul 10. doi: 10.1128/mBio.01186-18

PMCID:: PMC6050957

Abstract Article PDF–3.8M

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PMC Links for Taxonomy (Select 330214) (146)
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txid559164[Organism] (13)
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txid272918[Organism] AND (latest[filter] AND all[filter] NOT anom... (3)
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Conserved Domain Links for Gene (Select 856352) (1)
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PREDICTED: Rattus norvegicus leucine rich repeat containing 8 VRAC subunit B (Lr...
PREDICTED: Rattus norvegicus leucine rich repeat containing 8 VRAC subunit B (Lrrc8b), transcript variant X4, mRNA
gi|2678894764|ref|XM_039091815.2|

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