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Select item 70398631.

Metagenomic Insights Into the Cycling of Dimethylsulfoniopropionate and Related Molecules in the Eastern China Marginal Seas

Delei Song, Yunhui Zhang, Ji Liu, Haohui Zhong, Yanfen Zheng, Shun Zhou, Min Yu, Jonathan D. Todd, Xiao-Hua Zhang

Front Microbiol. 2020; 11: 157. Published online 2020 Feb 18. doi: 10.3389/fmicb.2020.00157

PMCID:: PMC7039863

Abstract Article PDF–7.2M

Select item 69467962.

Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment

Zhichao Zhou, Yang Liu, Wei Xu, Jie Pan, Zhu-Hua Luo, Meng Li

mSystems. 2020 Jan-Feb; 5(1): e00795-19. Published online 2020 Jan 7. doi: 10.1128/mSystems.00795-19

Correction in:: mSystems. 2022 Sep-Oct; 7(5): e00750-22.

PMCID:: PMC6946796

Abstract Article PDF–7.6M

Select item 69025263.

Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes

Javier Tamames, Marta Cobo-Simón, Fernando Puente-Sánchez

BMC Genomics. 2019; 20: 960. Published online 2019 Dec 10. doi: 10.1186/s12864-019-6289-6

PMCID:: PMC6902526

Abstract Article PDF–4.0M

Select item 68065254.

RNA 3D structure prediction guided by independent folding of homologous sequences

Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki

BMC Bioinformatics. 2019; 20: 512. Published online 2019 Oct 22. doi: 10.1186/s12859-019-3120-y

PMCID:: PMC6806525

Abstract Article PDF–2.3M

Select item 67760195.

Visualization and prediction of CRISPR incidence in microbial trait-space to identify drivers of antiviral immune strategy

JL Weissman, Rohan M. R. Laljani, William F. Fagan, Philip L. F. Johnson

ISME J. 2019 Oct; 13(10): 2589–2602. Published online 2019 Jun 25. doi: 10.1038/s41396-019-0411-2

PMCID:: PMC6776019

Abstract Article PDF–677K

Select item 67667936.

Molecular Dynamics Gives New Insights into the Glucose Tolerance and Inhibition Mechanisms on β-Glucosidases

Leon Sulfierry Corrêa Costa, Diego César Batista Mariano, Rafael Eduardo Oliveira Rocha, Johannes Kraml, Carlos Henrique da Silveira, Klaus Roman Liedl, Raquel Cardoso de Melo-Minardi, Leonardo Henrique Franca de Lima

Molecules. 2019 Sep; 24(18): 3215. Published online 2019 Sep 4. doi: 10.3390/molecules24183215

PMCID:: PMC6766793

Abstract Article PDF–3.6M

Select item 67512387.

The first fungal laccase with an alkaline pH optimum obtained by directed evolution and its application in indigo dye decolorization

Qiang Yin, Gang Zhou, Can Peng, Yinliang Zhang, Ursula Kües, Juanjuan Liu, Yazhong Xiao, Zemin Fang

AMB Express. 2019; 9: 151. Published online 2019 Sep 18. doi: 10.1186/s13568-019-0878-2

PMCID:: PMC6751238

Abstract Article PDF–1.4M

Select item 66463348.

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

Brent Nowinski, Christa B. Smith, Courtney M. Thomas, Kaitlin Esson, Roman Marin, III., Christina M. Preston, James M. Birch, Christopher A. Scholin, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee, T. B. K. Reddy, Chris Daum, Alex Copeland, I.-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Tijana Glavina del Rio, William B. Whitman, Ronald P. Kiene, Emiley A. Eloe-Fadrosh, Mary Ann Moran

Sci Data. 2019; 6: 129. Published online 2019 Jul 22. doi: 10.1038/s41597-019-0132-4

PMCID:: PMC6646334

Abstract Article PDF–1.2M

Select item 66260199.

GeneHunt for rapid domain-specific annotation of glycoside hydrolases

S. N. Nguyen, A. Flores, D. Talamantes, F. Dar, A. Valdez, J. Schwans, R. Berlemont

Sci Rep. 2019; 9: 10137. Published online 2019 Jul 12. doi: 10.1038/s41598-019-46290-w

PMCID:: PMC6626019

Abstract Article PDF–4.0M

Select item 658823810.

Archaeal community variation in the Qinhuangdao coastal aquaculture zone revealed by high-throughput sequencing

Shuping Wang, Xin Zheng, Huijuan Xia, Di Shi, Juntao Fan, Pengyuan Wang, Zhenguang Yan

PLoS One. 2019; 14(6): e0218611. Published online 2019 Jun 21. doi: 10.1371/journal.pone.0218611

PMCID:: PMC6588238

Abstract Article PDF–2.7M

Select item 658117311.

Methylphosphonate Oxidation in Prochlorococcus Strain MIT9301 Supports Phosphate Acquisition, Formate Excretion, and Carbon Assimilation into Purines

Oscar A. Sosa, John R. Casey, David M. Karl

Appl Environ Microbiol. 2019 Jul 1; 85(13): e00289-19. Prepublished online 2019 Apr 26. Published online 2019 Jun 17. doi: 10.1128/AEM.00289-19

PMCID:: PMC6581173

Abstract Article PDF–560K

Select item 652554412.

Complete arsenic-based respiratory cycle in the marine microbial communities of pelagic oxygen-deficient zones

Jaclyn K. Saunders, Clara A. Fuchsman, Cedar McKay, Gabrielle Rocap

Proc Natl Acad Sci U S A. 2019 May 14; 116(20): 9925–9930. Published online 2019 Apr 29. doi: 10.1073/pnas.1818349116

PMCID:: PMC6525544

Abstract Article PDF–2.8M

Select item 647422813.

Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts

Maxim Rubin-Blum, Chakkiath Paul Antony, Lizbeth Sayavedra, Clara Martínez-Pérez, Daniel Birgel, Jörn Peckmann, Yu-Chen Wu, Paco Cardenas, Ian MacDonald, Yann Marcon, Heiko Sahling, Ute Hentschel, Nicole Dubilier

ISME J. 2019 May; 13(5): 1209–1225. Published online 2019 Jan 15. doi: 10.1038/s41396-019-0346-7

PMCID:: PMC6474228

Abstract Article PDF–6.9M

Select item 635935014.

A Computational Method to Propose Mutations in Enzymes Based on Structural Signature Variation (SSV)

Diego César Batista Mariano, Lucianna Helene Santos, Karina dos Santos Machado, Adriano Velasque Werhli, Leonardo Henrique França de Lima, Raquel Cardoso de Melo-Minardi

Int J Mol Sci. 2019 Jan; 20(2): 333. Published online 2019 Jan 15. doi: 10.3390/ijms20020333

PMCID:: PMC6359350

Abstract Article PDF–2.5M

Select item 630531115.

Expression and Characteristics of Two Glucose-Tolerant GH1 β-glucosidases From Actinomadura amylolytica YIM 77502^T for Promoting Cellulose Degradation

Yi-Rui Yin, Peng Sang, Wen-Dong Xian, Xin Li, Jian-Yu Jiao, Lan Liu, Wael N. Hozzein, Min Xiao, Wen-Jun Li

Front Microbiol. 2018; 9: 3149. Published online 2018 Dec 18. doi: 10.3389/fmicb.2018.03149

PMCID:: PMC6305311

Abstract Article PDF–1.2M

Select item 629899616.

Elucidation of glutamine lipid biosynthesis in marine bacteria reveals its importance under phosphorus deplete growth in Rhodobacteraceae

Alastair F. Smith, Branko Rihtman, Rachel Stirrup, Eleonora Silvano, Michaela A. Mausz, David J. Scanlan, Yin Chen

ISME J. 2019 Jan; 13(1): 39–49. Published online 2018 Aug 14. doi: 10.1038/s41396-018-0249-z

PMCID:: PMC6298996

Abstract Article PDF–2.5M

Select item 628885017.

Colombia, an unknown genetic diversity in the era of Big Data

Alejandra Noreña – P, Andrea González Muñoz, Jeanneth Mosquera-Rendón, Kelly Botero, Marco A. Cristancho

BMC Genomics. 2018; 19(Suppl 8): 859. Published online 2018 Dec 11. doi: 10.1186/s12864-018-5194-8

PMCID:: PMC6288850

Abstract Article PDF–918K

Select item 627010418.

Bisucaberin B, a Linear Hydroxamate Class Siderophore from the Marine Bacterium Tenacibaculum mesophilum

Masaki J. Fujita, Koji Nakano, Ryuichi Sakai

Molecules. 2013 Apr; 18(4): 3917–3926. Published online 2013 Apr 2. doi: 10.3390/molecules18043917

PMCID:: PMC6270104

Abstract Article PDF–342K

Select item 626524419.

A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts

Soo-Jin Yeom, Moonjeong Kim, Kil Koang Kwon, Yaoyao Fu, Eugene Rha, Sung-Hyun Park, Hyewon Lee, Haseong Kim, Dae-Hee Lee, Dong-Myung Kim, Seung-Goo Lee

Nat Commun. 2018; 9: 5053. Published online 2018 Nov 29. doi: 10.1038/s41467-018-07488-0

PMCID:: PMC6265244

Abstract Article PDF–1.5M

Select item 622446420.

Adaptation to sub-optimal hosts is a driver of viral diversification in the ocean

Hagay Enav, Shay Kirzner, Debbie Lindell, Yael Mandel-Gutfreund, Oded Béjà

Nat Commun. 2018; 9: 4698. Published online 2018 Nov 8. doi: 10.1038/s41467-018-07164-3

PMCID:: PMC6224464

Abstract Article PDF–2.7M

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