PMC Links for Taxonomy (Select 93062) - PMC

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Items: 18

Select item 59337761.

Genomic evolution of Staphylococcus aureus isolates colonizing the nares and progressing to bacteremia

Jeanne B. Benoit, Daniel N. Frank, Mary T. Bessesen

PLoS One. 2018; 13(5): e0195860. Published online 2018 May 3. doi: 10.1371/journal.pone.0195860

PMCID:: PMC5933776

Abstract Article PDF–2.8M

Select item 57532772.

PRODORIC2: the bacterial gene regulation database in 2018

Denitsa Eckweiler, Christian-Alexander Dudek, Juliane Hartlich, David Brötje, Dieter Jahn

Nucleic Acids Res. 2018 Jan 4; 46(Database issue): D320–D326. Published online 2017 Nov 9. doi: 10.1093/nar/gkx1091

PMCID:: PMC5753277

Abstract Article PDF–2.2M

Select item 51277733.

Insight into the 3D structure and substrate specificity of previously uncharacterized GNAT superfamily acetyltransferases from pathogenic bacteria

Karolina A. Majorek, Tomasz Osinski, David T. Tran, Alina Revilla, Wayne F. Anderson, Wladek Minor, Misty L. Kuhn

Biochim Biophys Acta. Author manuscript; available in PMC 2018 Jan 1.

Published in final edited form as: Biochim Biophys Acta. 2017 Jan; 1865(1): 55–64. Published online 2016 Oct 23. doi: 10.1016/j.bbapap.2016.10.011

PMCID:: PMC5127773

Abstract Article PDF–2.7M

Select item 50544494.

An Approach for Searching Insertions in Bacterial Genes Leading to the Phase Shift of Triplet Periodicity

Maria A. Korotkova, Nikolay A. Kudryashov, Eugene V. Korotkov

Genomics Proteomics Bioinformatics. 2011 Oct; 9(4-5): 158–170. Published online 2011 Dec 23. doi: 10.1016/S1672-0229(11)60019-3

PMCID:: PMC5054449

Abstract Article PDF–360K

Select item 41578175.

GABenchToB: A Genome Assembly Benchmark Tuned on Bacteria and Benchtop Sequencers

Sebastian Jünemann, Karola Prior, Andreas Albersmeier, Stefan Albaum, Jörn Kalinowski, Alexander Goesmann, Jens Stoye, Dag Harmsen

PLoS One. 2014; 9(9): e107014. Published online 2014 Sep 8. doi: 10.1371/journal.pone.0107014

Correction in:: PLoS One. 2015; 10(3): e0118741.

Correction in:: PLoS One. 2024; 19(2): e0299269.

PMCID:: PMC4157817

Abstract Article PDF–469K

Select item 34029226.

Metabolic network alignment in large scale by network compression

Ferhat Ay, Michael Dang, Tamer Kahveci

BMC Bioinformatics. 2012; 13(Suppl 3): S2. Published online 2012 Mar 21. doi: 10.1186/1471-2105-13-S3-S2

PMCID:: PMC3402922

Abstract Article PDF–1.4M

Select item 32136867.

LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures

Clinton Torres, Elizabeth A Vitalis, Brian R Baker, Shea N Gardner, Marisa W Torres, John M Dzenitis

BMC Bioinformatics. 2011; 12: 240. Published online 2011 Jun 16. doi: 10.1186/1471-2105-12-240

PMCID:: PMC3213686

Abstract Article PDF–357K

Select item 32079738.

A novel bacteriophage Tail-Associated Muralytic Enzyme (TAME) from Phage K and its development into a potent antistaphylococcal protein

Vivek Daniel Paul, Sanjeev Saravanan Rajagopalan, Sudarson Sundarrajan, Shilpa E George, Jiya Y Asrani, Renjith Pillai, Ravisha Chikkamadaiah, Murali Durgaiah, Bharathi Sriram, Sriram Padmanabhan

BMC Microbiol. 2011; 11: 226. Published online 2011 Oct 11. doi: 10.1186/1471-2180-11-226

PMCID:: PMC3207973

Abstract Article PDF–1.2M

Select item 30700689.

Exoproteome of Staphylococcus aureus reveals putative determinants of nasal carriage

Gowrishankar Muthukrishnan, Gerry A. Quinn, Ryan P. Lamers, Carolyn Diaz, Amy L. Cole, Sixue Chen, Alexander M. Cole

J Proteome Res. Author manuscript; available in PMC 2012 Apr 1.

Published in final edited form as: J Proteome Res. 2011 Apr 1; 10(4): 2064–2078. Published online 2011 Mar 7. doi: 10.1021/pr200029r

PMCID:: PMC3070068

Abstract Article PDF–936K

Select item 299128610.

An integrated approach to epitope analysis II: A system for proteomic-scale prediction of immunological characteristics

Robert D Bremel, E Jane Homan

Immunome Res. 2010; 6: 8. Published online 2010 Nov 2. doi: 10.1186/1745-7580-6-8

PMCID:: PMC2991286

Abstract Article PDF–2.8M

Select item 288401911.

Regulation of Hemolysin Expression and Virulence of Staphylococcus aureus by a Serine/Threonine Kinase and Phosphatase

Kellie Burnside, Annalisa Lembo, Melissa de los Reyes, Anton Iliuk, Nguyen-Thao BinhTran, James E. Connelly, Wan-Jung Lin, Byron Z. Schmidt, Anthony R. Richardson, Ferric C. Fang, Weiguo Andy Tao, Lakshmi Rajagopal

PLoS One. 2010; 5(6): e11071. Published online 2010 Jun 11. doi: 10.1371/journal.pone.0011071

PMCID:: PMC2884019

Abstract Article PDF–3.9M

Select item 277742312.

FIGfams: yet another set of protein families

Folker Meyer, Ross Overbeek, Alex Rodriguez

Nucleic Acids Res. 2009 Nov; 37(20): 6643–6654. Published online 2009 Sep 17. doi: 10.1093/nar/gkp698

PMCID:: PMC2777423

Abstract Article PDF–10M

Select item 276597213.

Unsupervised statistical clustering of environmental shotgun sequences

Andrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff, Joshua S Weitz

BMC Bioinformatics. 2009; 10: 316. Published online 2009 Oct 2. doi: 10.1186/1471-2105-10-316

PMCID:: PMC2765972

Abstract Article PDF–872K

Select item 224460214.

Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins

Johannes Sollner, Rainer Grohmann, Ronald Rapberger, Paul Perco, Arno Lukas, Bernd Mayer

Immunome Res. 2008; 4: 1. Published online 2008 Jan 7. doi: 10.1186/1745-7580-4-1

PMCID:: PMC2244602

Abstract Article PDF–404K

Select item 185231615.

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa Ensman, Frank Stanley, Michael Trelinski, Peter Ortoleva

Algorithms Mol Biol. 2007; 2: 2. Published online 2007 Mar 30. doi: 10.1186/1748-7188-2-2

PMCID:: PMC1852316

Abstract Article PDF–707K

Select item 38786316.

A Comparative Genome Analysis Identifies Distinct Sorting Pathways in Gram-Positive Bacteria

David Comfort, Robert T. Clubb

Infect Immun. 2004 May; 72(5): 2710–2722. doi: 10.1128/IAI.72.5.2710-2722.2004

PMCID:: PMC387863

Abstract Article PDF–757K

Select item 31429217.

Hierarchical Scaffolding With Bambus

Mihai Pop, Daniel S. Kosack, Steven L. Salzberg

Genome Res. 2004 Jan; 14(1): 149–159. doi: 10.1101/gr.1536204

PMCID:: PMC314292

Abstract Article PDF–282K

Select item 17191218.

Detection of methicillin resistance in staphylococci by using a DNA probe.

G L Archer, E Pennell

Antimicrob Agents Chemother. 1990 Sep; 34(9): 1720–1724. doi: 10.1128/aac.34.9.1720

PMCID:: PMC171912

Summary Page Browse PDF–975K

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PMC Links for Taxonomy (Select 93062) (18)
PMC
Mus musculus trichohyalin (Tchh), mRNA
Mus musculus trichohyalin (Tchh), mRNA
gi|2169419170|ref|NM_001163098.2|

Nucleotide
TGFB2, partial [Elminia longicauda]
TGFB2, partial [Elminia longicauda]
gi|258674212|gb|ACV86940.1|

Protein
GAPDH, partial [Elminia longicauda]
GAPDH, partial [Elminia longicauda]
gi|258674144|gb|ACV86917.1|

Protein
ATPase subunit 6, partial (mitochondrion) [Elminia longicauda]
ATPase subunit 6, partial (mitochondrion) [Elminia longicauda]
gi|258674304|gb|ACV86986.1|

Protein

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