pruitt[au] AND ("reference sequences"[title] OR refseq[title]) - PMC

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Items: 14

Select item 17167181.

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Kim D. Pruitt, Tatiana Tatusova, Donna R. Maglott

Nucleic Acids Res. 2007 Jan; 35(Database issue): D61–D65. Published online 2006 Nov 27. doi: 10.1093/nar/gkl842

PMCID:: PMC1716718

Article PDF–241K

Select item 32450082.

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

Kim D. Pruitt, Tatiana Tatusova, Garth R. Brown, Donna R. Maglott

Nucleic Acids Res. 2012 Jan; 40(Database issue): D130–D135. Published online 2011 Nov 24. doi: 10.1093/nar/gkr1079

PMCID:: PMC3245008

Article PDF–1.7M

Select item 39650183.

RefSeq: an update on mammalian reference sequences

Kim D. Pruitt, Garth R. Brown, Susan M. Hiatt, Françoise Thibaud-Nissen, Alexander Astashyn, Olga Ermolaeva, Catherine M. Farrell, Jennifer Hart, Melissa J. Landrum, Kelly M. McGarvey, Michael R. Murphy, Nuala A. O’Leary, Shashikant Pujar, Bhanu Rajput, Sanjida H. Rangwala, Lillian D. Riddick, Andrei Shkeda, Hanzhen Sun, Pamela Tamez, Raymond E. Tully, Craig Wallin, David Webb, Janet Weber, Wendy Wu, Michael DiCuccio, Paul Kitts, Donna R. Maglott, Terence D. Murphy, James M. Ostell

Nucleic Acids Res. 2014 Jan 1; 42(Database issue): D756–D763. Published online 2013 Nov 19. doi: 10.1093/nar/gkt1114

PMCID:: PMC3965018

Article PDF–1.3M

Select item 1023934.

NCBI’s LocusLink and RefSeq

Donna R. Maglott, Kenneth S. Katz, Hugues Sicotte, Kim D. Pruitt

Nucleic Acids Res. 2000 Jan 1; 28(1): 126–128. doi: 10.1093/nar/28.1.126

PMCID:: PMC102393

Article PDF–77K

Select item 47028495.

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

Nuala A. O'Leary, Mathew W. Wright, J. Rodney Brister, Stacy Ciufo, Diana Haddad, Rich McVeigh, Bhanu Rajput, Barbara Robbertse, Brian Smith-White, Danso Ako-Adjei, Alexander Astashyn, Azat Badretdin, Yiming Bao, Olga Blinkova, Vyacheslav Brover, Vyacheslav Chetvernin, Jinna Choi, Eric Cox, Olga Ermolaeva, Catherine M. Farrell, Tamara Goldfarb, Tripti Gupta, Daniel Haft, Eneida Hatcher, Wratko Hlavina, Vinita S. Joardar, Vamsi K. Kodali, Wenjun Li, Donna Maglott, Patrick Masterson, Kelly M. McGarvey, Michael R. Murphy, Kathleen O'Neill, Shashikant Pujar, Sanjida H. Rangwala, Daniel Rausch, Lillian D. Riddick, Conrad Schoch, Andrei Shkeda, Susan S. Storz, Hanzhen Sun, Francoise Thibaud-Nissen, Igor Tolstoy, Raymond E. Tully, Anjana R. Vatsan, Craig Wallin, David Webb, Wendy Wu, Melissa J. Landrum, Avi Kimchi, Tatiana Tatusova, Michael DiCuccio, Paul Kitts, Terence D. Murphy, Kim D. Pruitt

Nucleic Acids Res. 2016 Jan 4; 44(Database issue): D733–D745. Published online 2015 Nov 8. doi: 10.1093/nar/gkv1189

PMCID:: PMC4702849

Article PDF–168K

Select item 38828896.

Comparison of RefSeq protein-coding regions in human and vertebrate genomes

Jessica H Fong, Terence D Murphy, Kim D Pruitt

BMC Genomics. 2013; 14: 654. Published online 2013 Sep 25. doi: 10.1186/1471-2164-14-654

PMCID:: PMC3882889

Article PDF–1.6M

Select item 45519397.

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates

Bhanu Rajput, Terence D. Murphy, Kim D. Pruitt

Nucleic Acids Res. 2015 Sep 3; 43(15): 7270–7279. Published online 2015 Jul 13. doi: 10.1093/nar/gkv713

PMCID:: PMC4551939

Article PDF–2.7M

Select item 5399798.

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Kim D. Pruitt, Tatiana Tatusova, Donna R. Maglott

Nucleic Acids Res. 2005 Jan 1; 33(Database Issue): D501–D504. Published online 2004 Dec 17. doi: 10.1093/nar/gki025

PMCID:: PMC539979

Article PDF–62K

Select item 297879.

RefSeq and LocusLink: NCBI gene-centered resources

Kim D. Pruitt, Donna R. Maglott

Nucleic Acids Res. 2001 Jan 1; 29(1): 137–140. doi: 10.1093/nar/29.1.137

PMCID:: PMC29787

Article PDF–108K

Select item 460207310.

Mouse genome annotation by the RefSeq project

Kelly M. McGarvey, Tamara Goldfarb, Eric Cox, Catherine M. Farrell, Tripti Gupta, Vinita S. Joardar, Vamsi K. Kodali, Michael R. Murphy, Nuala A. O’Leary, Shashikant Pujar, Bhanu Rajput, Sanjida H. Rangwala, Lillian D. Riddick, David Webb, Mathew W. Wright, Terence D. Murphy, Kim D. Pruitt

Mamm Genome. 2015; 26(9-10): 379–390. Published online 2015 Jul 28. doi: 10.1007/s00335-015-9585-8

PMCID:: PMC4602073

Article PDF–1.7M

Select item 874468411.

RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse

Catherine M. Farrell, Tamara Goldfarb, Sanjida H. Rangwala, Alexander Astashyn, Olga D. Ermolaeva, Vichet Hem, Kenneth S. Katz, Vamsi K. Kodali, Frank Ludwig, Craig L. Wallin, Kim D. Pruitt, Terence D. Murphy

Genome Res. 2022 Jan; 32(1): 175–188. doi: 10.1101/gr.275819.121

PMCID:: PMC8744684

Article PDF–4.4M

Select item 634487512.

RefSeq curation and annotation of stop codon recoding in vertebrates

Bhanu Rajput, Kim D Pruitt, Terence D Murphy

Nucleic Acids Res. 2019 Jan 25; 47(2): 594–606. Published online 2018 Dec 7. doi: 10.1093/nar/gky1234

PMCID:: PMC6344875

Article PDF–8.7M

Select item 575333113.

RefSeq: an update on prokaryotic genome annotation and curation

Daniel H Haft, Michael DiCuccio, Azat Badretdin, Vyacheslav Brover, Vyacheslav Chetvernin, Kathleen O’Neill, Wenjun Li, Farideh Chitsaz, Myra K Derbyshire, Noreen R Gonzales, Marc Gwadz, Fu Lu, Gabriele H Marchler, James S Song, Narmada Thanki, Roxanne A Yamashita, Chanjuan Zheng, Françoise Thibaud-Nissen, Lewis Y Geer, Aron Marchler-Bauer, Kim D Pruitt

Nucleic Acids Res. 2018 Jan 4; 46(Database issue): D851–D860. Published online 2017 Nov 3. doi: 10.1093/nar/gkx1068

PMCID:: PMC5753331

Article PDF–225K

Select item 268657214.

NCBI Reference Sequences: current status, policy and new initiatives

Kim D. Pruitt, Tatiana Tatusova, William Klimke, Donna R. Maglott

Nucleic Acids Res. 2009 Jan; 37(Database issue): D32–D36. Published online 2008 Oct 16. doi: 10.1093/nar/gkn721

PMCID:: PMC2686572

Article PDF–85K

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