Alignment last updated: 11/20/2008 16:49:04
Join Legend
Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.
Alignment for AC157923.4 and AC102297.12
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AC157923.4 Mus musculus chromosome 1, clone RP23-178F20, complete sequence [htgs_phase3]
Length: 204,025 bp
AC102297.12 Mus musculus chromosome 1, clone RP24-392K18, complete sequence [htgs_phase3]
Length: 167,248 bp
Alignment Summary
Join evaluation: Alignment count: 1
|
| Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time | Id | Alignment | Releases |
| A | 1 | 9584 | - | + | chenhc | Taxid 10090 chrom 1 Primary assembly | 2008-11-20 16:49:04.706 | 54457 | 24980 | GRCm39, GRCm38, MGSCv37 |
Alignment 1 of 1
AC157923.4 : - : 9583..1 AC102297.12 : + : 1..9583 Mismatches = 0, Gaps = 0, Length = 9583 Percent identity = 100% Score = 1.9e+04 bits (9583), Expect = 0 7 BAC and 5 Fosmid bridging clones. 7 BAC and 5 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AC157923.4 <9583 gatctttggcattgctcctaagtcatttctttaccctggtctaaatgaaacaagctctta 9524 AC102297.12 >1 ............................................................ 60 AC157923.4 <9523 aaaccctttttgaagcaaggtgtcattgagatagccactcttctgtgctctctgtatgca 9464 AC102297.12 >61 ............................................................ 120 AC157923.4 <9463 cattcatagatatatgtgccttctccaatacaaacaaataaacaaatggttaattttttg 9404 AC102297.12 >121 ............................................................ 180 AC157923.4 <9403 tgagagaagaaaacttgatttagtgttctcaggctgtagtggacttttttttttttttaa 9344 AC102297.12 >181 ............................................................ 240 AC157923.4 <9343 tacaataccttctgatcccaagaaaatttcttgttcacaggtgtgtgtgtgtgtgtgtgt 9284 AC102297.12 >241 ............................................................ 300 AC157923.4 <9283 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagagagagagagagagagaga 9224 AC102297.12 >301 ............................................................ 360 AC157923.4 <9223 gagagagagagagagagagatcgttaaaatgtctaactatactcttgtctcataccctca 9164 AC102297.12 >361 ............................................................ 420 AC157923.4 <9163 agctcctggtggacagtttagggtttcagaatgcaaactcagttctggtgtcctagtttg 9104 AC102297.12 >421 ............................................................ 480 AC157923.4 <9103 gtttgggtgttctgttgccgtgataaaacacacacaatagtcaacttgggaggaaagggt 9044 AC102297.12 >481 ............................................................ 540 AC157923.4 <9043 ttgttcagcatacactttcaggaaactgtccatctctgagggactaggcagaagctcagc 8984 AC102297.12 >541 ............................................................ 600 AC157923.4 <8983 caagaacctagaggcaggaacagaagcaaagaccatcacagaggaatgctgtttcctgga 8924 AC102297.12 >601 ............................................................ 660 AC157923.4 <8923 ttttttttttttaatagcttgctcagcttgttttcttagtcagtttggagccatttgcct 8864 AC102297.12 >661 ............................................................ 720 AC157923.4 <8863 aggagtggcaccacccttggtgggccaagctttcccacagtcaggaatacatcaagacaa 8804 AC102297.12 >721 ............................................................ 780 AC157923.4 <8803 tgactccagaggccaatctgatgagggtaattcctaatttgagggtcccacttcccaggt 8744 AC102297.12 >781 ............................................................ 840 AC157923.4 <8743 gactctagttgctgtcaatttgacaaaagactcatcagccctctagggaagccacctcaa 8684 AC102297.12 >841 ............................................................ 900 AC157923.4 <8683 gcctgcagccagagagcttcaggagttgtggctttagggcatgccaatttgtatgtaggc 8624 AC102297.12 >901 ............................................................ 960 AC157923.4 <8623 agcaataattagaagcaaaccataacaaagccttctcctaccactgaaaaagtcatcccc 8564 AC102297.12 >961 ............................................................ 1020 AC157923.4 <8563 tacagggataacattaaattaaggtcctttctggtactgtatgctatcagtttaattcta 8504 AC102297.12 >1021 ............................................................ 1080 AC157923.4 <8503 taatgctatgcgtagtcatggtgcaaaagatgtgcagccagccaacagctaagaacgtga 8444 AC102297.12 >1081 ............................................................ 1140 AC157923.4 <8443 ggcataatttatggagagcagcatgttcataggcagtgctgtggagcagatggaggtaca 8384 AC102297.12 >1141 ............................................................ 1200 AC157923.4 <8383 catttccctgtaaagctcccaattgttttctcaatctgccatcatgtgattgttgcttgc 8324 AC102297.12 >1201 ............................................................ 1260 AC157923.4 <8323 gcagttctccaagctgacccacctcatacaaaattgttaggagcatctcatctgtacaac 8264 AC102297.12 >1261 ............................................................ 1320 AC157923.4 <8263 acccgtgtttggtttggaagatagacgttctgagcacactcaagtaaaggtagacattct 8204 AC102297.12 >1321 ............................................................ 1380 AC157923.4 <8203 aagcacacatgagtaaagatgaattcgtggagaatctttgctgtttcccttctgttgggc 8144 AC102297.12 >1381 ............................................................ 1440 AC157923.4 <8143 cacatctaagagacacttccttgcgaggatgggtgcggtagagagtacttattctgcaaa 8084 AC102297.12 >1441 ............................................................ 1500 AC157923.4 <8083 tactgcggaatgtgcaggtccatgagcttctctggaaaaagaaggaaatataaatgcttt 8024 AC102297.12 >1501 ............................................................ 1560 AC157923.4 <8023 cttattctgcacttcacatatgacctaagagtgcccagtcttgatcaagagcagaaagct 7964 AC102297.12 >1561 ............................................................ 1620 AC157923.4 <7963 acatggaaatccaagaatgagctttgagttggttgcatcaaccagtcaaaattgcttatg 7904 AC102297.12 >1621 ............................................................ 1680 AC157923.4 <7903 catatttaggacggcaagagaaaatattaatttcaatttacaagtcatcgaaaggcacct 7844 AC102297.12 >1681 ............................................................ 1740 AC157923.4 <7843 tgtggcccacataatgaatagccctgtgttaaaagtaatacatgtttgttctttcacaaa 7784 AC102297.12 >1741 ............................................................ 1800 AC157923.4 <7783 taaatttccctctgaaatatagacatctgtcaaggactcaattatctttccctgcatgag 7724 AC102297.12 >1801 ............................................................ 1860 AC157923.4 <7723 ctgtaaaagaacataaaggaaataatatactacactgcttatttgaaagagatcaggggt 7664 AC102297.12 >1861 ............................................................ 1920 AC157923.4 <7663 atgcagctccacactggcacgttcttaatttcatggtgttaagaaaagaaactctgagcg 7604 AC102297.12 >1921 ............................................................ 1980 AC157923.4 <7603 tggaacagcaaaccccttcctgctgtacttgtgcaattcccatcagtgtacacatagggg 7544 AC102297.12 >1981 ............................................................ 2040 AC157923.4 <7543 aagggttttttcctcattaagtagaatcactaagatcgcttccctgtcttactctactaa 7484 AC102297.12 >2041 ............................................................ 2100 AC157923.4 <7483 cccttgtaaggagaatgtgcacatcgaatttcctttgaaaaaacaaaggaatcaccacac 7424 AC102297.12 >2101 ............................................................ 2160 AC157923.4 <7423 tcctgggctccaagagtatgcagaagaacaagggcacaaagtgtatttcacagatgtaaa 7364 AC102297.12 >2161 ............................................................ 2220 AC157923.4 <7363 tggtcatttaaatgagattagacatttatgaaatgtatgcatcaaacagccccccccaaa 7304 AC102297.12 >2221 ............................................................ 2280 AC157923.4 <7303 tcaaaaaatataataagacatagttaagctgagctaggctgcctccatgcaatgtaaacg 7244 AC102297.12 >2281 ............................................................ 2340 AC157923.4 <7243 ggttgcctgtgcttctgctttttttccccccgctctgatacactccagggccttcccact 7184 AC102297.12 >2341 ............................................................ 2400 AC157923.4 <7183 ttcactgtaggatgcacacataaataaaataacaaaatattttgtagaaagctctgccag 7124 AC102297.12 >2401 ............................................................ 2460 AC157923.4 <7123 gttaagtacacagagccttcctgaataccctgtattaccttctcttgtgtcgctttaaaa 7064 AC102297.12 >2461 ............................................................ 2520 AC157923.4 <7063 tagacttgaaaaaaattctaaagaagaatattttaatagcttcccagagagcagaatgta 7004 AC102297.12 >2521 ............................................................ 2580 AC157923.4 <7003 ttatcattatggtacaaagggcatcattcatttttaattctctgctccacaggtgttccc 6944 AC102297.12 >2581 ............................................................ 2640 AC157923.4 <6943 tactcaggctgtggttgacacttagagggcctaattatgattcatacatcccccatcccc 6884 AC102297.12 >2641 ............................................................ 2700 AC157923.4 <6883 cagaaaccggtctttctaatatcacagaatgcagttattgagaggaagaaaacacagttc 6824 AC102297.12 >2701 ............................................................ 2760 AC157923.4 <6823 agtcctcaaagccagacaccgtgatcctcaatcttgtccacacctagggagctttaaaaa 6764 AC102297.12 >2761 ............................................................ 2820 AC157923.4 <6763 ccatgccgcctcagccaggcctcagaacctaataaaggggagcctcttgggggtggggtc 6704 AC102297.12 >2821 ............................................................ 2880 AC157923.4 <6703 cgaggacaggtatttatttgatctttccagatgttattttatttggtggtgtttcgtatg 6644 AC102297.12 >2881 ............................................................ 2940 AC157923.4 <6643 tagcaatagcagccatcggcaaggaataaacaagtaagaacaaccctttaaaacacatta 6584 AC102297.12 >2941 ............................................................ 3000 AC157923.4 <6583 atatgaactgctttgcctcttacatgcaattggttgtgtttgcttttctttttccaaatc 6524 AC102297.12 >3001 ............................................................ 3060 AC157923.4 <6523 aaaaaagatgcttataaggtctgataagctgttcatatcacgatatgtgttctctaccac 6464 AC102297.12 >3061 ............................................................ 3120 AC157923.4 <6463 atatgatgtttgactagaatactgggtttcattcaatatgaaagtccatgatctgctctt 6404 AC102297.12 >3121 ............................................................ 3180 AC157923.4 <6403 ttcttggtggctttgtgactgactccaaagccacagatcactgaagagaacccttctagg 6344 AC102297.12 >3181 ............................................................ 3240 AC157923.4 <6343 gaaattgactcttaataaatcttaacttctccttgagctataacgccagtattcatttag 6284 AC102297.12 >3241 ............................................................ 3300 AC157923.4 <6283 caactaaaacagatatgatgtttataattaattttctataacgtccaaagtttagaaaca 6224 AC102297.12 >3301 ............................................................ 3360 AC157923.4 <6223 aagtaattagagacagaagatgtcctgtagattcagtaccaatgatgaacgagatatttg 6164 AC102297.12 >3361 ............................................................ 3420 AC157923.4 <6163 attcagaaaagggagattgaaaatcttggggcaagtttatgtaagtagttaatacataca 6104 AC102297.12 >3421 ............................................................ 3480 AC157923.4 <6103 tgcttgtaaaatgaaaataagctgatgccaaagggaattcatgataataatatgcaatat 6044 AC102297.12 >3481 ............................................................ 3540 AC157923.4 <6043 ttgtacaattaatactgatctttccccatacagtttattattatgggaatatgaaataca 5984 AC102297.12 >3541 ............................................................ 3600 AC157923.4 <5983 ggggatctataaatataaagagaaaatataaagaaaaattatctgttgttggaaattcat 5924 AC102297.12 >3601 ............................................................ 3660 AC157923.4 <5923 aagaagtagattccctttacaagcgcaatgtgctccaagacctcagggaatatataacac 5864 AC102297.12 >3661 ............................................................ 3720 AC157923.4 <5863 agcagataatactcaaccttatagaccttactatacaaatacatatatgcaataaaattt 5804 AC102297.12 >3721 ............................................................ 3780 AC157923.4 <5803 aagttataaattaataagaaggtaacaacaatgactaatgatgaagttgaataattacaa 5744 AC102297.12 >3781 ............................................................ 3840 AC157923.4 <5743 ccctgttactatataaagtagtagaagtaagtcatttagactgtataatggttcctggaa 5684 AC102297.12 >3841 ............................................................ 3900 AC157923.4 <5683 tttttcatttagtattttaagacaggaattgataagtaattgaaacagttaaggaagaac 5624 AC102297.12 >3901 ............................................................ 3960 AC157923.4 <5623 tattgtgttggagaagtttactggtctaataggatctgactggagagtagatacagacgg 5564 AC102297.12 >3961 ............................................................ 4020 AC157923.4 <5563 tcaattaaaaccaaatgcttccctcaaagacttgctgagattccccctaacctaagaaat 5504 AC102297.12 >4021 ............................................................ 4080 AC157923.4 <5503 caatccatcaatagtcatagggcctaaagaccactgaacacctacaagggtttttaacac 5444 AC102297.12 >4081 ............................................................ 4140 AC157923.4 <5443 aactttccaagatttggtgtttgatttctgctttgtttttcttttgaaaatgtatttaac 5384 AC102297.12 >4141 ............................................................ 4200 AC157923.4 <5383 tcttcactaagtggattgattttgtctaagaaaatagcagggaccatgagcaaaatacaa 5324 AC102297.12 >4201 ............................................................ 4260 AC157923.4 <5323 aaatttactggtgtatcaaatgagaaagactgggggactcttttaaagcatccatgtgta 5264 AC102297.12 >4261 ............................................................ 4320 AC157923.4 <5263 tgatctcagtattaccacggaaaaatatattatggatttccaggctttgcaaaataatta 5204 AC102297.12 >4321 ............................................................ 4380 AC157923.4 <5203 tataatacacttattgttgggaaaagatcaatagtattttcaaaaggcataatctgtccc 5144 AC102297.12 >4381 ............................................................ 4440 AC157923.4 <5143 ctttgttataatatgctgtttcttttcagtaacttggaaactgaagcaaacttgctacac 5084 AC102297.12 >4441 ............................................................ 4500 AC157923.4 <5083 aaatagatttttcatttttaaaacatatttgaatgcttttctcactgtgcagctgtagat 5024 AC102297.12 >4501 ............................................................ 4560 AC157923.4 <5023 ttgtgtctctattttaagttcttagtgcgatggtattagaaatttggcttcagcaagaaa 4964 AC102297.12 >4561 ............................................................ 4620 AC157923.4 <4963 aattcccagatgtgtaaagaatgacatattatctagtcctatttagcagcaaagcaaacc 4904 AC102297.12 >4621 ............................................................ 4680 AC157923.4 <4903 acataagagtgttgtgttttttataattatttcattacaaataagaaaaagagatttgtc 4844 AC102297.12 >4681 ............................................................ 4740 AC157923.4 <4843 agagttggcatgcaaggagtcataataacaaattttcattgttgtttaccattgttaatg 4784 AC102297.12 >4741 ............................................................ 4800 AC157923.4 <4783 tgctgggcgatgtgcacattccttcactgacgctcggggcctttagtaaacagaaaggag 4724 AC102297.12 >4801 ............................................................ 4860 AC157923.4 <4723 ctggtttggagcaggttttcttcaacataaaattattacagaagggcaataatataatta 4664 AC102297.12 >4861 ............................................................ 4920 AC157923.4 <4663 gcacagaaaattgttccaagattcaagcctcatactcgagaaacaataatggctataaga 4604 AC102297.12 >4921 ............................................................ 4980 AC157923.4 <4603 aacaactatttctaaacgccagaattttcccaattcgtggtccacagacactgctccctt 4544 AC102297.12 >4981 ............................................................ 5040 AC157923.4 <4543 tgtggagagatattgaccttgaacgagagactgaaggaagttatactctccttacagaag 4484 AC102297.12 >5041 ............................................................ 5100 AC157923.4 <4483 tacatgattctcttcaggacagaatgtctactgtgtcagatgcttaaatatctctagcag 4424 AC102297.12 >5101 ............................................................ 5160 AC157923.4 <4423 gtatagagggattggacaggtcacagccttccttggaagttagcttggtttctaatacca 4364 AC102297.12 >5161 ............................................................ 5220 AC157923.4 <4363 aagcaataaagagaaactatcagtagccatggaagcattatgtagggacaaagggttccc 4304 AC102297.12 >5221 ............................................................ 5280 AC157923.4 <4303 aaaccagcagtgacaaatatcctagttcaagtttgtccccctgcattgtaacatgtttta 4244 AC102297.12 >5281 ............................................................ 5340 AC157923.4 <4243 atccctatatgatagtctttgctgaatgattgaaaggcgtggataatgtctggagaagag 4184 AC102297.12 >5341 ............................................................ 5400 AC157923.4 <4183 ccatgaagaccatttgccatggtagtgacattgaggaaatggcatcacattatctgtaga 4124 AC102297.12 >5401 ............................................................ 5460 AC157923.4 <4123 gcagcctgtggtagtgtcacagaggatggttgtatgtgttggcattctctctgctgagat 4064 AC102297.12 >5461 ............................................................ 5520 AC157923.4 <4063 gagtatctgacaaaagtgcatgaaagaaggaagagtttgtttttgtccccagttttgtca 4004 AC102297.12 >5521 ............................................................ 5580 AC157923.4 <4003 cagccagttcatcatggcaggtatatgaggcagccagtcatgtcatttctatagtcaggt 3944 AC102297.12 >5581 ............................................................ 5640 AC157923.4 <3943 gacagaaaggcagatgttggtgctcaggcagctttatcctacctattcagtacagcacgg 3884 AC102297.12 >5641 ............................................................ 5700 AC157923.4 <3883 tatgccatgggatggtacagtcctgttcaggctgagtctttcaaattctgttagcctttc 3824 AC102297.12 >5701 ............................................................ 5760 AC157923.4 <3823 tggaagcacactcatcgatacattcacaactgtgtttccatggtgattctgaatcctatc 3764 AC102297.12 >5761 ............................................................ 5820 AC157923.4 <3763 aagtgtccagtgaggtttatctgtcatagagaggcaatgagaaatcccaggactagtttg 3704 AC102297.12 >5821 ............................................................ 5880 AC157923.4 <3703 tagaacgatgtcatgatccttacattgctccggaaggggaacctggctaaagcggtcctt 3644 AC102297.12 >5881 ............................................................ 5940 AC157923.4 <3643 cttatatcagtctaactagttagaagattagaacaatgctcgaggggttgcaggatgatt 3584 AC102297.12 >5941 ............................................................ 6000 AC157923.4 <3583 actccacgcactgctaatgcttactgccctggcttttcatttgttatagtttatagaaaa 3524 AC102297.12 >6001 ............................................................ 6060 AC157923.4 <3523 aggaattggggagccattctggatcaaccgatatgtttcatctctcttcagtataactat 3464 AC102297.12 >6061 ............................................................ 6120 AC157923.4 <3463 ttgaagtggaaatttctggtttcattggagactcctgatgttttgctgaagcagacacgt 3404 AC102297.12 >6121 ............................................................ 6180 AC157923.4 <3403 gagaggacccatgatatttggaaagaatgtaaatataaacccacagacagtgtgagaagg 3344 AC102297.12 >6181 ............................................................ 6240 AC157923.4 <3343 ctcttgcattggttcaccttgcaccaagttgctgatctttgcttgtcaggacttcctaga 3284 AC102297.12 >6241 ............................................................ 6300 AC157923.4 <3283 gagtaacttgctaaagaacctcttgtgatattccagctggttcttaccacttccatggac 3224 AC102297.12 >6301 ............................................................ 6360 AC157923.4 <3223 ttccatggaacctcaccatttcttctggattgagctgccactactgattcatgtttggca 3164 AC102297.12 >6361 ............................................................ 6420 AC157923.4 <3163 tttgctagttagactggactgctgttgctgattcatgtttgatgttttagactgctaata 3104 AC102297.12 >6421 ............................................................ 6480 AC157923.4 <3103 tcctgacaacaaagattaggatctcccccaaggaactacttctaaacaggtctacaacct 3044 AC102297.12 >6481 ............................................................ 6540 AC157923.4 <3043 gtttcctattaatctttctttctccctacctttggtaagtgggctagaggggtagttgat 2984 AC102297.12 >6541 ............................................................ 6600 AC157923.4 <2983 acatttaagaactattactaaaataggttttgaaaaatctaagcctacaactattagtta 2924 AC102297.12 >6601 ............................................................ 6660 AC157923.4 <2923 gtattctgttgcacattaataaatatggtttttgtttcctactctataactttaaaaaga 2864 AC102297.12 >6661 ............................................................ 6720 AC157923.4 <2863 ttcattatggtaggtcacaagtatgttcacccttaatattcataatctatatagatgtta 2804 AC102297.12 >6721 ............................................................ 6780 AC157923.4 <2803 ctctatggaggaaaaggaatgttgcaagtacaatgaaggttaaggattttgaaataatct 2744 AC102297.12 >6781 ............................................................ 6840 AC157923.4 <2743 tattctcaattatgtagggggctaatccaagcataacagtcctcaaaaatactatacaaa 2684 AC102297.12 >6841 ............................................................ 6900 AC157923.4 <2683 ggtagaaaagttgacaacaaaatttcagaaattcaaaaataggcagtatttatgagacat 2624 AC102297.12 >6901 ............................................................ 6960 AC157923.4 <2623 aagatggatttaattaatatggctagattttaagacaaaggaggatagtaggtctagagt 2564 AC102297.12 >6961 ............................................................ 7020 AC157923.4 <2563 ttgtagttaacctcagaccaacagccaagaaggaaacaggtttcacaactacaagttagt 2504 AC102297.12 >7021 ............................................................ 7080 AC157923.4 <2503 taagtttataagcatcctagacctagaccataggttctcaaccagcgttttccagcttgt 2444 AC102297.12 >7081 ............................................................ 7140 AC157923.4 <2443 gaggcaccatccccacaggaatctcatatcagatatcttgcatatcagatgtttacatta 2384 AC102297.12 >7141 ............................................................ 7200 AC157923.4 <2383 tggtccataacagtagcaaaattgcagttatgaaatagcaatgaaatggttatatggttt 2324 AC102297.12 >7201 ............................................................ 7260 AC157923.4 <2323 ggggtcaccacaacatatgggatgcatcaaagggttgcagcattgggaaggttgagaacc 2264 AC102297.12 >7261 ............................................................ 7320 AC157923.4 <2263 actgatagatcttcagaaggttgcataaacctaccaatgcatatatattttgactaataa 2204 AC102297.12 >7321 ............................................................ 7380 AC157923.4 <2203 tatatgctatgcttcagacctaaacaaatgcatgatttttaagaaatgtgtcctatcttg 2144 AC102297.12 >7381 ............................................................ 7440 AC157923.4 <2143 ctgtgtggtgttaggtttgtagaaatatgttaaagcaataatagaaatgcctattctact 2084 AC102297.12 >7441 ............................................................ 7500 AC157923.4 <2083 aatctactatgagaactgtgctctgtgcctctttatctttggctctcagcacctcttatg 2024 AC102297.12 >7501 ............................................................ 7560 AC157923.4 <2023 gtatcaacattaacaatagtggaaagaaaaggaaggatggtaaaatacttctagtaaaga 1964 AC102297.12 >7561 ............................................................ 7620 AC157923.4 <1963 cagggaaattcttaaggcaagaagtcaacaatagatatagagttgggaaaacaaagaagg 1904 AC102297.12 >7621 ............................................................ 7680 AC157923.4 <1903 agttacacagacggtcacagtgtgatgctggtgtagagagcctttctgcattatatttta 1844 AC102297.12 >7681 ............................................................ 7740 AC157923.4 <1843 gagtcgatggaagcatggtggcatcccttagtagttcatggctttctctcatctcccaga 1784 AC102297.12 >7741 ............................................................ 7800 AC157923.4 <1783 ccatccattgccaaaaagcatagacaaaagacttctggagtatagttctttattctaaat 1724 AC102297.12 >7801 ............................................................ 7860 AC157923.4 <1723 agatggagtattattcatgtaggtgttactcatctcttttgtgtagctattgctggtaga 1664 AC102297.12 >7861 ............................................................ 7920 AC157923.4 <1663 aatctgtttttctcatagtctcacccagatgcctgcaatttcacctcaccaaccatccat 1604 AC102297.12 >7921 ............................................................ 7980 AC157923.4 <1603 tctcttatatgactactgtcattgtcctagatcaagtcactatttatattaaatattttt 1544 AC102297.12 >7981 ............................................................ 8040 AC157923.4 <1543 aacttttaaaatgtgtacgcttaagtaacaataaaataaactcatagagacatacctgat 1484 AC102297.12 >8041 ............................................................ 8100 AC157923.4 <1483 ttaagacattggataatgctggaaactcagcaacaccttatgcttcaccctcagtggcac 1424 AC102297.12 >8101 ............................................................ 8160 AC157923.4 <1423 tcttctttccccagaggtagatattatcctgagctttattgtcttttcttgctattctct 1364 AC102297.12 >8161 ............................................................ 8220 AC157923.4 <1363 gtacactttccacattcaaatgtttttctgagtgtatcagttgcttttctgtggtattga 1304 AC102297.12 >8221 ............................................................ 8280 AC157923.4 <1303 taattcaccatgatccaagcaactcatagaagaagagtttatttggtctcaagattctgt 1244 AC102297.12 >8281 ............................................................ 8340 AC157923.4 <1243 ttagggttgggagtccttgatgtcaggagaggcatagcagtaggtggctggagcctgaga 1184 AC102297.12 >8341 ............................................................ 8400 AC157923.4 <1183 cctcacatcttcacccacattcagaaagcagtcaacaaactgcaagcagataaggttata 1124 AC102297.12 >8401 ............................................................ 8460 AC157923.4 <1123 aaccctcagaaccctcctcaggtggcatactttccccaagcaaggctcataagagctcca 1064 AC102297.12 >8461 ............................................................ 8520 AC157923.4 <1063 taacttcctcagagtcaccgactgtggaccaagcattcagaatgtgagcatgtgcggtca 1004 AC102297.12 >8521 ............................................................ 8580 AC157923.4 <1003 tgcttcattacaaccaccacacaaagcataattggttttatgtgatgttgaaacaaataa 944 AC102297.12 >8581 ............................................................ 8640 AC157923.4 <943 gaatgaaataatcatagtagcaaacaaaacagttcacgaggaaacacataggaaatgcat 884 AC102297.12 >8641 ............................................................ 8700 AC157923.4 <883 ataattaataaaatataaggaaatgcatatgtatatatgtgtatagaaactaagttgtaa 824 AC102297.12 >8701 ............................................................ 8760 AC157923.4 <823 attatttttattagttttcagatagcttatacattctagagtgccttttatgttggttca 764 AC102297.12 >8761 ............................................................ 8820 AC157923.4 <763 gtgtcctttaatgatcttcatcaaagtttttttttaatataccccaaggtatttattgta 704 AC102297.12 >8821 ............................................................ 8880 AC157923.4 <703 tcttaaggagtacttggatacttttcattggatcaagtaatgttgctaaaaccactcata 644 AC102297.12 >8881 ............................................................ 8940 AC157923.4 <643 taaacatattctggtgcaggtgtaagagtttctttagggaacacctcaagggaagaagta 584 AC102297.12 >8941 ............................................................ 9000 AC157923.4 <583 ccaggccacgaagtttttcagtgtgcagtgttaccaggtaataaaaaaaaattgtttccc 524 AC102297.12 >9001 ............................................................ 9060 AC157923.4 <523 cagctattgtactaatttcatccgtattagctttctaattaagaaaagtaactattaatg 464 AC102297.12 >9061 ............................................................ 9120 AC157923.4 <463 atgcgtcctactttcttttccatccctatcctgccacaagctttgatctgcttctctaga 404 AC102297.12 >9121 ............................................................ 9180 AC157923.4 <403 aggatgctttccacagatatgttcctcacaacctcaacccagttccggtcagggtgccgc 344 AC102297.12 >9181 ............................................................ 9240 AC157923.4 <343 agccacatcctattgcctacacaacagatacagctcttggctcttttcaatattcctcat 284 AC102297.12 >9241 ............................................................ 9300 AC157923.4 <283 atttccttttctccaaagctcattgggctaaattggccagcttttgcactgttttctttc 224 AC102297.12 >9301 ............................................................ 9360 AC157923.4 <223 tcttcttcaatccatattctgtgcccttaagattttcttacttaattttttcctgtctgg 164 AC102297.12 >9361 ............................................................ 9420 AC157923.4 <163 aatgccttttctctctgcccctaactactactccttcttaggaagccccattgctaccca 104 AC102297.12 >9421 ............................................................ 9480 AC157923.4 <103 cctctcctgggattcataccctgcgtatttcatctgtgtgtcctaaaacctcgcagcatc 44 AC102297.12 >9481 ............................................................ 9540 AC157923.4 <43 ctgcctgccatgtattgctcattacaacactgactaggaattc 1 AC102297.12 >9541 ........................................... 9583
Events
| Id | Type | Date | Whodid | Comment |
| 38144 | ImportOldDb | 09/28/2005 13:47:00 | f_old_db | |
| 38145 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
| 165214 | CreateSwitchPt | 11/20/2008 16:49:04 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
BAC Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| C3H-103K10 | AC102297.12 | 99.03% | pos 162563 (R-) | AC102297.12 | 99.01% | pos 25523 (F+) |
| C3H-110G2 | AC157923.4 | 99.55% | pos 60908 (R-) | AC102297.12 | 99.49% | pos 72389 (F-) |
| C3H-151H13 | AC157923.4 | 99.23% | pos 92581 (R+) | |||
| C3H-183H18 | AC102297.12 | 99.48% | pos 146058 (R-) | AC157923.4 | 99.36% | pos 28230 (F-) |
| C3H-34A12 | AC157923.4 | 99.77% | pos 92435 (R-) | AC102297.12 | 99.39% | pos 74195 (F-) |
| C3H-53D17 | AC157923.4 | 100% | pos 11277 (R+) | AC157923.4 | 99.38% | pos 149062 (F-) |
| CH29-12J12 | AC157923.4 | 100% | pos 180702 (R+) | |||
| CH29-31B15 | AC102297.12 | 99.64% | pos 134249 (R-) | AC157923.4 | 99.5% | pos 102026 (F-) |
| CH29-44G16 | AC157923.4 | 99.41% | pos 191767 (F+) | |||
| CH29-488H24 | AC157923.4 | 99.5% | pos 130824 (F+) | |||
| AC157923.4 | 99.38% | pos 130972 (F+) | ||||
| CH29-488J23 | AC157923.4 | 99.49% | pos 37634 (F+) | |||
| AC157923.4 | 100% | pos 37681 (F+) | ||||
| CH29-506E16 | AC102297.12 | 99.08% | pos 21368 (F+) | |||
| CH29-522F19 | AC102297.12 | 99.76% | pos 99482 (R-) | |||
| CH29-591M10 | AC102297.12 | 99.39% | pos 42280 (R-) | AC157923.4 | 99.63% | pos 141201 (F-) |
| CH29-591P10 | AC157923.4 | 99.63% | pos 102107 (R+) | |||
| CH29-5I17 | AC157923.4 | 100% | pos 160991 (F-) | |||
| RP23-62G17 | AC157923.4 | 99.43% | pos 123026 (R-) | |||
| RP24-181I2 | AC102297.12 | 99.7% | pos 84461 (F-) | |||
| RP24-214D15 | AC157923.4 | 99.01% | pos 118379 (F+) | |||
| RP24-228L22 | AC157923.4 | 99.74% | pos 40955 (R+) | |||
| RP24-241F16 | AC157923.4 | 100% | pos 174578 (R-) | AC157923.4 | 99.85% | pos 17479 (F+) |
| RP24-244I20 | AC157923.4 | 100% | pos 191095 (R+) | |||
| RP24-285E13 | AC157923.4 | 99.59% | pos 153084 (R-) | AC102297.12 | 99.32% | pos 44342 (F-) |
| RP24-294K23 | AC157923.4 | 99.64% | pos 116233 (F+) | |||
| RP24-296I20 | AC157923.4 | 99.43% | pos 98816 (R+) | |||
| RP24-321H22 | AC102297.12 | 99.38% | pos 119677 (F+) | |||
| RP24-367J22 | AC102297.12 | 99.09% | pos 152497 (R-) | |||
| RP24-386D9 | AC157923.4 | 99.43% | pos 9371 (F+) | |||
| RP24-392K18 | AC102297.12 | 99.28% | pos 29 (R+) | AC102297.12 | 99.08% | pos 167187 (F-) |
| AC157923.4 | 99.28% | pos 9555 (R-) | ||||
| RP24-76P4 | AC102297.12 | 99.78% | pos 31300 (R+) | |||
| RP24-93C3 | AC157923.4 | 99.64% | pos 94231 (R-) | |||
Fosmid Ends
| Clone | R | F | ||||
|---|---|---|---|---|---|---|
| Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
| WI1-1053J7 | AC157923.4 | 100% | pos 181907 (R+) | |||
| WI1-106I20 | AC157923.4 | 99.76% | pos 76401 (R+) | AC157923.4 | 99.41% | pos 114842 (F-) |
| WI1-1096B24 | AC157923.4 | 100% | pos 119656 (R+) | AC157923.4 | 100% | pos 159356 (F-) |
| WI1-1114B19 | AC157923.4 | 100% | pos 122395 (F-) | |||
| WI1-115C23 | AC157923.4 | 99.57% | pos 179864 (R+) | |||
| WI1-1160K9 | AC157923.4 | 99.8% | pos 124280 (R-) | AC157923.4 | 99.65% | pos 80415 (F+) |
| WI1-1183L2 | AC157923.4 | 99.5% | pos 167693 (R+) | |||
| WI1-1223M16 | AC157923.4 | 99.53% | pos 85462 (R-) | AC157923.4 | 100% | pos 46080 (F+) |
| WI1-1425L18 | AC102297.12 | 100% | pos 130831 (F+) | |||
| WI1-1483K1 | AC157923.4 | 100% | pos 105817 (R+) | AC157923.4 | 100% | pos 148411 (F-) |
| WI1-1518M14 | AC157923.4 | 100% | pos 34351 (R+) | AC157923.4 | 99.4% | pos 73861 (F-) |
| WI1-1579N7 | AC102297.12 | 100% | pos 81492 (F-) | |||
| WI1-1580H24 | AC102297.12 | 99.7% | pos 112900 (R+) | AC102297.12 | 100% | pos 152028 (F-) |
| WI1-1597J3 | AC102297.12 | 99.73% | pos 50650 (R-) | AC157923.4 | 99.84% | pos 1293 (F-) |
| AC102297.12 | 99.84% | pos 8291 (F+) | ||||
| WI1-1601G24 | AC157923.4 | 100% | pos 85462 (R-) | AC157923.4 | 99.83% | pos 46075 (F+) |
| WI1-1656K3 | AC102297.12 | 99.81% | pos 132739 (F+) | |||
| WI1-1705M9 | AC157923.4 | 100% | pos 168248 (R+) | |||
| WI1-1762O7 | AC157923.4 | 100% | pos 80453 (F+) | |||
| WI1-1978P19 | AC157923.4 | 99.6% | pos 9601 (R+) | AC157923.4 | 99.68% | pos 48676 (F-) |
| WI1-1983O23 | AC157923.4 | 100% | pos 46235 (R-) | AC157923.4 | 99.81% | pos 6965 (F+) |
| AC102297.12 | 99.81% | pos 2619 (F-) | ||||
| WI1-2034B1 | AC157923.4 | 99.71% | pos 176950 (R+) | |||
| WI1-2183J4 | AC157923.4 | 100% | pos 165718 (F+) | |||
| WI1-2209G23 | AC102297.12 | 99.31% | pos 126797 (R+) | |||
| WI1-2226A20 | AC102297.12 | 100% | pos 77377 (F-) | |||
| WI1-2285O24 | AC102297.12 | 99.82% | pos 126767 (R+) | |||
| WI1-2406M7 | AC157923.4 | 100% | pos 168044 (R+) | |||
| WI1-2417J15 | AC157923.4 | 99.77% | pos 140941 (R-) | AC157923.4 | 100% | pos 98776 (F+) |
| WI1-2487K6 | AC102297.12 | 100% | pos 151997 (F-) | |||
| WI1-2523L12 | AC102297.12 | 99.07% | pos 12636 (R-) | AC157923.4 | 99.81% | pos 33157 (F-) |
| WI1-2733M9 | AC157923.4 | 99.83% | pos 111011 (R-) | AC157923.4 | 99.83% | pos 69694 (F+) |
| WI1-2808O10 | AC157923.4 | 99.71% | pos 107430 (R+) | AC157923.4 | 100% | pos 145352 (F-) |
| WI1-2863G4 | AC102297.12 | 99.66% | pos 92021 (R-) | AC102297.12 | 100% | pos 48696 (F+) |
| WI1-2895H16 | AC157923.4 | 99.78% | pos 174502 (R+) | |||
| WI1-292L22 | AC102297.12 | 100% | pos 27932 (R+) | AC102297.12 | 100% | pos 71603 (F-) |
| WI1-325D9 | AC157923.4 | 100% | pos 23017 (F+) | |||
| WI1-442L11 | AC102297.12 | 99.82% | pos 128037 (R+) | |||
| WI1-472K22 | AC157923.4 | 100% | pos 155315 (R+) | |||
| WI1-497G6 | AC157923.4 | 100% | pos 15937 (R-) | AC102297.12 | 100% | pos 34196 (F-) |
| WI1-533F14 | AC157923.4 | 100% | pos 48401 (R+) | AC157923.4 | 99.42% | pos 84658 (F-) |
| WI1-676J19 | AC157923.4 | 100% | pos 18324 (R-) | |||
| WI1-848C12 | AC157923.4 | 100% | pos 200649 (R+) | |||
| WI1-856M14 | AC157923.4 | 100% | pos 43465 (R-) | AC102297.12 | 100% | pos 5799 (F-) |
| AC157923.4 | 100% | pos 3785 (F+) | ||||
| WI1-934M3 | AC157923.4 | 99.32% | pos 186822 (F+) | |||
| WI1-942M18 | AC157923.4 | 100% | pos 69477 (R-) | AC157923.4 | 100% | pos 32202 (F+) |
| WI1-952M2 | AC102297.12 | 99.78% | pos 93976 (R+) | AC102297.12 | 100% | pos 131778 (F-) |
| WI1-973I22 | AC157923.4 | 100% | pos 135796 (F+) | |||
| WI1-988O14 | AC157923.4 | 99.6% | pos 151992 (R+) | AC157923.4 | 99.55% | pos 189366 (F-) |
| WI1-990G18 | AC102297.12 | 100% | pos 130979 (F+) | |||
Repeats
Too repeats, not showing repeat table.