Alignment last updated: 11/20/2008 16:57:05

Join Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <50 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

Alignment for AL591425.4 and BX255926.10

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AL591425.4 Mouse DNA sequence from clone RP23-278K23 on chromosome 11, complete sequence [htgs_phase3]

Length: 75,415 bp

BX255926.10 Mouse DNA sequence from clone RP23-440M18 on chromosome 11, complete sequence [htgs_phase3]

Length: 73,844 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 4386
Total Length: 2000
Aligned Length: 2000
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time	Id	Alignment	Releases
A	75415	2001	+	+	chenhc	Taxid 10090 chrom 11 Primary assembly	2008-11-20 16:57:05.723	64141	4386	GRCm39, GRCm38, MGSCv37

Alignment 1 of 1

 AL591425.4 : + : 73416..75415
 BX255926.10 : + : 1..2000
 Mismatches = 0, Gaps = 0, Length = 2000
 Percent identity = 100%
 Score = 3965 bits (2000), Expect = 0
  0 BAC and 4 Fosmid bridging clones.
  0 BAC and 4 Fosmid concordant clones.
  0 BAC and 0 Fosmid discordant clones.

AL591425.4  >73416   gaattctgggattgttctggagtgcaaaggcagagggacaggatggtcagagacaaaaac 73475  
BX255926.10 >1       ............................................................ 60     

AL591425.4  >73476   caaacaacaacaacaaaccagagctggagaacaaactgagacccagccagcttacttcac 73535  
BX255926.10 >61      ............................................................ 120    

AL591425.4  >73536   acattagtgaaagagtggtaacagctgtcacacactagaaggctcaaaaggtactcaagg 73595  
BX255926.10 >121     ............................................................ 180    

AL591425.4  >73596   cagatggtgaaagtgagttgtatctgtgccagcacccaggaagcagtggcaagagaacta 73655  
BX255926.10 >181     ............................................................ 240    

AL591425.4  >73656   gcaaatttgaggtcaacttcatctacatagaaacttccaggcaagcaggtctatttaatg 73715  
BX255926.10 >241     ............................................................ 300    

AL591425.4  >73716   aaatcaaaaaaggaaaaagaaaaaaaaaaagaaagaaaagaaaagaagaaacaaacaggg 73775  
BX255926.10 >301     ............................................................ 360    

AL591425.4  >73776   gcaaaaccaacagcaacaaaaccccatggcacactttttggtttttggtttttattttgt 73835  
BX255926.10 >361     ............................................................ 420    

AL591425.4  >73836   ttttcgagacagggtttcactgggtactccttgctgtcctggaacttgctctggctggcc 73895  
BX255926.10 >421     ............................................................ 480    

AL591425.4  >73896   tggatctcagagatccgcctgtctctgcctcttgagtgctggtattaagggcgaccacca 73955  
BX255926.10 >481     ............................................................ 540    

AL591425.4  >73956   ttgctgcccagctagtgacacatgctctcaatctcaacacttgggaagcagagctctgtg 74015  
BX255926.10 >541     ............................................................ 600    

AL591425.4  >74016   gaatcaaagccagcctgtacacagtggtacccagagctgcttggtgacaccttgtctcaa 74075  
BX255926.10 >601     ............................................................ 660    

AL591425.4  >74076   aaaaaaaaaatggtgtgggagtggagtgactaaagaagagatggtttaatatttaagagc 74135  
BX255926.10 >661     ............................................................ 720    

AL591425.4  >74136   actggctgctcatcttccagagaacctggaatctattcctggcacccacatggtgcctca 74195  
BX255926.10 >721     ............................................................ 780    

AL591425.4  >74196   caagcctctgtaattcaggtcccagaggatctgtagcccttttctggccttgcagtcatt 74255  
BX255926.10 >781     ............................................................ 840    

AL591425.4  >74256   tgtggtatatagacatatatatacggggacaacacacccatagacagttagttagttaat 74315  
BX255926.10 >841     ............................................................ 900    

AL591425.4  >74316   tcgttcattagtaccccactctagtgcacctgtgcacatgccgtgactggtatgtggagg 74375  
BX255926.10 >901     ............................................................ 960    

AL591425.4  >74376   tcagaggacaacttctaaggatcattttccttcctcctcttccttcccctgggtcccagg 74435  
BX255926.10 >961     ............................................................ 1020   

AL591425.4  >74436   gactaaattcgggttgtcaggttttgtggcaagtgcatttgtctgctgagccatctcact 74495  
BX255926.10 >1021    ............................................................ 1080   

AL591425.4  >74496   ctgcccccaccaccaccaccatttttttgaggtttgctcttgttcatactggtcttaaac 74555  
BX255926.10 >1081    ............................................................ 1140   

AL591425.4  >74556   tccttggctcaaactactgtcagcacacaagtccataaagctaccacaattcccctgttc 74615  
BX255926.10 >1141    ............................................................ 1200   

AL591425.4  >74616   taagaaaaaaaaataggtgtacctataatcacaggaatttgagattctggggcaggaagt 74675  
BX255926.10 >1201    ............................................................ 1260   

AL591425.4  >74676   ttactttggcttcgaggtcaacccagtctatagaatgagattttgtctcaaaacaacaag 74735  
BX255926.10 >1261    ............................................................ 1320   

AL591425.4  >74736   aagaaattagaaaatgaattggtaaaggaacatcgatttgtctatagtttggtctgaagt 74795  
BX255926.10 >1321    ............................................................ 1380   

AL591425.4  >74796   caaaatttctggtttctttgaagactcctttgtgtcatgtaatgtttttctaaaaactgt 74855  
BX255926.10 >1381    ............................................................ 1440   

AL591425.4  >74856   cttatgagagatgttttggctaaagcagacccatgaaaagatgatttgctaagaatagac 74915  
BX255926.10 >1441    ............................................................ 1500   

AL591425.4  >74916   acatgatgttcttctagagacagcctaaaaggggggggggtggatatgatgttttaccag 74975  
BX255926.10 >1501    ............................................................ 1560   

AL591425.4  >74976   agcatatacttgagaaaacacatgatgtttcttttaaaaagacataaatatagcccaagg 75035  
BX255926.10 >1561    ............................................................ 1620   

AL591425.4  >75036   gacagtagacactgccagatggtgttggttcaccttgccattctttgttggttatcattt 75095  
BX255926.10 >1621    ............................................................ 1680   

AL591425.4  >75096   gtcatcacttcatagaaggaaacgcaccaggtaacttctaacagctttatgacaatgggt 75155  
BX255926.10 >1681    ............................................................ 1740   

AL591425.4  >75156   aagtcttttttttttttttttttttttgaacgtactgaacacgagttttcctttgaaatg 75215  
BX255926.10 >1741    ............................................................ 1800   

AL591425.4  >75216   cattaatttaacagaccaccagcttccagcatcctggaagctaagaatgttatctgaagc 75275  
BX255926.10 >1801    ............................................................ 1860   

AL591425.4  >75276   ctgcaactgattcccagattcactataacccacttctgatgtctccaccaatctattcaa 75335  
BX255926.10 >1861    ............................................................ 1920   

AL591425.4  >75336   aaaagtgttttgatatgtgctccattactataaaaacttcaaattatttccacattggaa 75395  
BX255926.10 >1921    ............................................................ 1980   

AL591425.4  >75396   catggaaactgggttgacct 75415  
BX255926.10 >1981    .................... 2000

Events

Id	Type	Date	Whodid	Comment
8246	ImportOldDb	09/02/2005 19:34:00	f_old_db
8247	ReSetShortOvlp	09/04/2008 10:31:48	dbo
174898	CreateSwitchPt	11/20/2008 16:57:05	chenhc	tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
C3H-111N19				AL591425.4	99.54%	pos 32838 (F-)
C3H-126C7				BX255926.10	99.1%	pos 4721 (F-)
C3H-172G21				BX255926.10	99.59%	pos 40620 (F-)
C3H-88H12	BX255926.10	99.73%	pos 6772 (R-)
C3H-90C23	AL591425.4	99.44%	pos 62798 (R-)
C3H-90D23	AL591425.4	99.27%	pos 62619 (R-)
CH29-163E3	BX255926.10	100%	pos 15022 (R+)
CH29-1K13				AL591425.4	99.74%	pos 50639 (F+)
CH29-32J21				AL591425.4	99.79%	pos 42262 (F-)
CH29-486L5				AL591425.4	99.42%	pos 62722 (F+)
CH29-510M21				AL591425.4	99.08%	pos 45324 (F-)
CH29-523H8				AL591425.4	99.53%	pos 24981 (F+)
CH29-583G15				AL591425.4	99.64%	pos 25900 (F+)
RP24-228H22	AL591425.4	100%	pos 10690 (R-)
RP24-250H18	BX255926.10	99.14%	pos 42232 (R-)
RP24-252J22	AL591425.4	99.52%	pos 61072 (R-)
RP24-260B19	AL591425.4	99.74%	pos 69917 (R-)
RP24-367O21				BX255926.10	99.78%	pos 68503 (F+)
RP24-369G5				AL591425.4	99.18%	pos 70339 (F-)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
WI1-1018D8	BX255926.10	99.64%	pos 58803 (R-)	BX255926.10	99.53%	pos 20797 (F+)
WI1-1038G17				BX255926.10	100%	pos 57907 (F+)
WI1-1176P13	AL591425.4	100%	pos 44662 (R+)	BX255926.10	100%	pos 15307 (F-)
WI1-121L19	AL591425.4	99.84%	pos 52738 (R-)	AL591425.4	99.29%	pos 15645 (F+)
WI1-1254A14	AL591425.4	100%	pos 28352 (R+)	AL591425.4	99.79%	pos 64187 (F-)
WI1-1331H11	AL591425.4	100%	pos 71431 (R+)	BX255926.10	99.51%	pos 39182 (F-)
WI1-1363K13	BX255926.10	99.84%	pos 70049 (R-)	BX255926.10	100%	pos 28156 (F+)
WI1-1416J3	BX255926.10	100%	pos 62751 (R+)
WI1-1417G19				BX255926.10	99.67%	pos 65089 (F+)
WI1-1444E15	AL591425.4	99.85%	pos 15442 (R+)	AL591425.4	100%	pos 54798 (F-)
WI1-1558F22	AL591425.4	99.85%	pos 16740 (R-)
WI1-155A11	BX255926.10	100%	pos 28272 (R+)	BX255926.10	99.04%	pos 67692 (F-)
WI1-1745A9				AL591425.4	99.74%	pos 39809 (F+)
WI1-175M13	AL591425.4	100%	pos 48181 (R+)	BX255926.10	100%	pos 15334 (F-)
WI1-1783A6				BX255926.10	99.82%	pos 40850 (F-)
WI1-1835M13	BX255926.10	99.68%	pos 10665 (R-)
WI1-1953H14	AL591425.4	99.72%	pos 54874 (R-)	AL591425.4	99.49%	pos 15603 (F+)
WI1-2004E1				BX255926.10	100%	pos 62802 (F+)
WI1-2004E2				BX255926.10	100%	pos 62754 (F+)
WI1-2004K1				BX255926.10	99.38%	pos 62801 (F+)
WI1-2079G3				BX255926.10	99.52%	pos 40792 (F-)
WI1-2085H1				AL591425.4	99.48%	pos 22672 (F-)
WI1-2107K16	AL591425.4	100%	pos 73279 (R+)	BX255926.10	99.39%	pos 40791 (F-)
WI1-258J20	AL591425.4	99.43%	pos 12118 (R+)	AL591425.4	100%	pos 52833 (F-)
WI1-2658G4				BX255926.10	100%	pos 52658 (F+)
WI1-273J1				BX255926.10	100%	pos 73113 (F+)
WI1-2901D23	AL591425.4	99.73%	pos 15834 (R+)	AL591425.4	100%	pos 55136 (F-)
WI1-2912A6	AL591425.4	99.81%	pos 15554 (R-)
WI1-373O2	AL591425.4	100%	pos 64183 (R-)	AL591425.4	100%	pos 24602 (F+)
WI1-377F3				BX255926.10	99.67%	pos 52674 (F+)
WI1-51G7	AL591425.4	100%	pos 15116 (R+)	AL591425.4	99.81%	pos 52840 (F-)
WI1-806M15	BX255926.10	100%	pos 59396 (R+)

Repeats

acc	start	stop	repeat id	strand	name	family	class
AL591425.4	4338	4365	14130927	+	(TC)n
AL591425.4	4591	4666	14130928	-	ID2	ID	SINE
AL591425.4	4932	5073	14130929	-	B1_Mur4	Alu	SINE
AL591425.4	5108	5292	14130930	+	B3	B2	SINE
AL591425.4	5293	5338	14130931	+	(CA)n		Simple_repeat
AL591425.4	5373	5531	14130932	+	ID_B1	B4	SINE
AL591425.4	5532	5993	14130933	-	RLTR28	ERVL	LTR
AL591425.4	5994	6156	14130934	+	B1_Mur4	Alu	SINE
AL591425.4	6157	6209	14130933	-	RLTR28	ERVL	LTR
AL591425.4	6210	6253	14130932	+	ID_B1	B4	SINE
AL591425.4	6263	6543	14130935	+	ID_B1	B4	SINE
AL591425.4	6600	6746	14130936	+	L1MC4		L1
AL591425.4	6948	7342	14130937	+	RMER10A	ERVL	LTR
AL591425.4	7339	7617	14130938	-	RMER17C	ERVK	LTR
AL591425.4	7800	7835	14130939	+	T-rich
AL591425.4	7838	7925	14130940	+	B3A	B2	SINE
AL591425.4	7935	7981	14130941	+	(CA)n		Simple_repeat
AL591425.4	7982	8054	14130942	-	ID_B1	B4	SINE
AL591425.4	8057	8221	14130943	-	MLTR12	ERV1	LTR
AL591425.4	8255	8277	14130944	+	(T)n
AL591425.4	8278	8423	14130945	-	B1_Mus2	Alu	SINE
AL591425.4	8424	8443	14130946	+	(T)n
AL591425.4	8485	8522	14130947	-	B1_Mur4	Alu	SINE
AL591425.4	8539	8640	14130948	+	(TC)n
AL591425.4	8642	8752	14130949	-	ID_B1	B4	SINE
AL591425.4	8759	9018	14130950	+	L1Md_F2		L1
AL591425.4	9493	9564	14130951	+	(A)n		Simple_repeat
AL591425.4	9820	9967	14130952	-	B1_Mm	Alu	SINE
AL591425.4	9971	10000	14130953	+	AT_rich		Low_complexity
AL591425.4	10017	10208	14130954	-	B2_Mm1a	B2	SINE
AL591425.4	10301	10369	14130955	+	RLTR20A4	ERVK	LTR
AL591425.4	4236	4271	14130926	+	(GA)n		Simple_repeat
AL591425.4	4067	4233	14130925	+	B2_Mm2	B2	SINE
AL591425.4	3909	4055	14130924	+	B1_Mur3	Alu	SINE
AL591425.4	3695	3904	14130923	+	MLTR12	ERV1	LTR
AL591425.4	3395	3631	14130922	+	MTD	ERVL-MaLR	LTR
AL591425.4	3067	3202	14130921	-	B1_Mus1	Alu	SINE
AL591425.4	3019	3066	14130920	+	(TTTTG)n
AL591425.4	2911	3009	14130919	+	(TG)n
AL591425.4	2626	2888	14130909	-	L1MEf		L1
AL591425.4	2390	2534	14130918	+	B1_Mur4	Alu	SINE
AL591425.4	2248	2364	14130917	-	B1F	Alu	SINE
AL591425.4	2200	2240	14130916	+	(TTTG)n
AL591425.4	2067	2170	14130915	-	RSINE1	B4	SINE
AL591425.4	1811	1909	14130914	-	B4A	B4	SINE
AL591425.4	1547	1663	14130913	+	B1_Mm	Alu	SINE
AL591425.4	1184	1546	14130912	-	MTEa	ERVL-MaLR	LTR
AL591425.4	1046	1144	14130911	-	B1F	Alu	SINE
AL591425.4	953	1022	14130910	+	C-rich
AL591425.4	861	928	14130909	-	L1MEf		L1
AL591425.4	734	831	14130908	+	(GA)n		Simple_repeat
AL591425.4	647	689	14130907	+	(TCTCC)n
AL591425.4	294	465	14130906	+	B3	B2	SINE
AL591425.4	59	191	14130905	-	B1_Mur2	Alu	SINE
AL591425.4	1	58	14130904	+	(TTTTA)n
AL591425.4	10340	10404	14130956	+	RLTR17B_Mm	ERVK	LTR
AL591425.4	18139	18166	14130979	+	(T)n
AL591425.4	18283	18375	14130980	+	PB1D7	Alu	SINE
AL591425.4	18409	18554	14130981	+	ID_B1	B4	SINE
AL591425.4	19346	19443	14130982	+	B1_Mur1	Alu	SINE
AL591425.4	19467	19783	14130983	+	B4	B4	SINE
AL591425.4	20149	20184	14130984	+	C-rich
AL591425.4	20201	20330	14130985	-	B1F	Alu	SINE
AL591425.4	20348	20390	14130986	+	(TG)n
AL591425.4	20394	20466	14130987	-	B4A	B4	SINE
AL591425.4	20479	20669	14130988	-	B2_Mm1a	B2	SINE
AL591425.4	20681	20703	14130989	+	(TTTTA)n
AL591425.4	20716	20849	14130990	-	B1_Mur3	Alu	SINE
AL591425.4	20908	20998	14130987	-	B4	B4	SINE
AL591425.4	21211	21348	14130991	-	B1_Mur2	Alu	SINE
AL591425.4	21353	21389	14130992	+	AT_rich		Low_complexity
AL591425.4	21390	21534	14130993	-	B1_Mur3	Alu	SINE
AL591425.4	21539	21572	14130994	+	AT_rich		Low_complexity
AL591425.4	21573	21720	14130995	-	B1_Mus1	Alu	SINE
AL591425.4	21721	21734	14130996	+	AT_rich		Low_complexity
AL591425.4	21735	21874	14130997	-	B3A	B2	SINE
AL591425.4	21965	22059	14130998	-	B3A	B2	SINE
AL591425.4	22171	22235	14130999	+	PB1D10	Alu	SINE
AL591425.4	22416	22502	14131000	+	B3A	B2	SINE
AL591425.4	22550	22592	14131001	+	T-rich
AL591425.4	22596	22662	14131002	-	ID4	ID	SINE
AL591425.4	22713	22733	14131003	+	(TGG)n		Simple_repeat
AL591425.4	22734	22808	14131004	+	(TG)n
AL591425.4	22810	22953	14131005	-	RSINE1	B4	SINE
AL591425.4	22977	23133	14131006	+	B3A	B2	SINE
AL591425.4	23134	23340	14131007	+	RSINE1	B4	SINE
AL591425.4	23341	23396	14131006	+	B2_Mm2	B2	SINE
AL591425.4	23588	23799	14131008	+	B3	B2	SINE
AL591425.4	10441	10837	14130957	-	MTA_Mm	ERVL-MaLR	LTR
AL591425.4	10843	10919	14130958	-	B4	B4	SINE
AL591425.4	10920	11064	14130959	-	B1_Mur2	Alu	SINE
AL591425.4	11065	11244	14130958	-	B4	B4	SINE
AL591425.4	11258	11435	14130960	+	(TTTCC)n
AL591425.4	11439	11465	14130961	+	(TTCCC)n
AL591425.4	11468	11618	14130962	+	(TTCTC)n
AL591425.4	11763	12061	14130963	+	MLT1C	ERVL-MaLR	LTR
AL591425.4	12101	12238	14130964	+	ID_B1	B4	SINE
AL591425.4	12531	12628	14130965	-	PB1D10	Alu	SINE
AL591425.4	12549	12641	14130966	-	ID_B1	B4	SINE
AL591425.4	12650	12695	14130967	+	(TCTA)n
AL591425.4	12965	13008	14130968	+	(TTTG)n
AL591425.4	13009	13155	14130969	-	B1_Mm	Alu	SINE
AL591425.4	13161	13293	14130970	-	PB1	Alu	SINE
AL591425.4	13453	13539	14130971	+	MIR	MIR	SINE
AL591425.4	13580	13679	14130972	-	B1F	Alu	SINE
AL591425.4	14003	14074	14130973	+	(GAA)n		Simple_repeat
AL591425.4	14080	14190	14130974	+	RSINE1	B4	SINE
AL591425.4	14196	14226	14130975	+	(TTA)n
AL591425.4	15609	15647	14130976	+	(CGG)n		Simple_repeat
AL591425.4	17212	17348	14130977	+	ID_B1	B4	SINE
AL591425.4	17290	17425	14130978	+	B1_Mur4	Alu	SINE
AL591425.4	17439	17535	14130977	+	ID_B1	B4	SINE
AL591425.4	23932	24090	14131009	-	L1M2		L1
AL591425.4	24091	24220	14131010	-	B1F2	Alu	SINE
AL591425.4	24221	24253	14131009	-	L1M2		L1
AL591425.4	25053	25135	14131011	+	RSINE1	B4	SINE
AL591425.4	25486	25508	14131012	+	(TTTTG)n
AL591425.4	25518	25663	14131013	-	B1_Mus1	Alu	SINE
AL591425.4	25808	25837	14131014	+	ID_B1	B4	SINE
AL591425.4	25838	25940	14131015	+	PB1D9	Alu	SINE
AL591425.4	25992	26092	14131016	-	MIRb	MIR	SINE
AL591425.4	27071	27131	14131017	+	T-rich
AL591425.4	28203	28368	14131018	+	MER5A	hAT-Charlie	DNA
AL591425.4	29149	29272	14131019	+	ID_B1	B4	SINE
AL591425.4	29274	29343	14131020	+	A-rich
AL591425.4	30619	30800	14131021	+	B3	B2	SINE
AL591425.4	30813	30853	14131022	+	G-rich
AL591425.4	32330	32361	14131023	+	(TTTG)n
AL591425.4	32520	32669	14131024	+	T-rich
AL591425.4	32922	33028	14131025	+	B1F	Alu	SINE
AL591425.4	33069	33100	14131026	+	(TG)n
AL591425.4	35091	35205	14131027	+	B1F	Alu	SINE
AL591425.4	35093	35222	14131028	-	YREP_Mm		Unknown
AL591425.4	35523	35766	14131029	+	B4A	B4	SINE
AL591425.4	35786	35832	14131030	+	(TA)n		Simple_repeat
AL591425.4	36014	36043	14131031	+	AT_rich		Low_complexity
AL591425.4	36067	36267	14131032	-	B3	B2	SINE
AL591425.4	37661	37715	14131033	+	(CA)n		Simple_repeat
AL591425.4	37750	37946	14131034	+	B2_Mm2	B2	SINE
AL591425.4	38068	38088	14131035	+	AT_rich		Low_complexity
AL591425.4	38094	38238	14131036	-	B1_Mus1	Alu	SINE
AL591425.4	38471	38661	14131037	-	B2_Mm1t	B2	SINE
AL591425.4	38857	39001	14131038	-	RSINE1	B4	SINE
AL591425.4	39202	39375	14131039	-	B3A	B2	SINE
AL591425.4	39376	39405	14131040	+	(CAG)n		Simple_repeat
AL591425.4	39406	39434	14131039	-	B3A	B2	SINE
AL591425.4	39631	39714	14131041	-	ID4_	ID	SINE
AL591425.4	39734	39800	14131042	+	ID4_	ID	SINE
AL591425.4	40497	40547	14131043	+	RLTR17B_Mm	ERVK	LTR
AL591425.4	40554	40766	14131044	-	URR1A	hAT-Charlie	DNA
AL591425.4	40843	40918	14131045	+	ID4	ID	SINE
AL591425.4	41071	41185	14131046	-	B1_Mus2	Alu	SINE
AL591425.4	41188	41373	14131047	+	ID_B1	B4	SINE
AL591425.4	41255	41395	14131048	-	YREP_Mm		Unknown
AL591425.4	41776	41826	14131049	+	(TCTA)n
AL591425.4	41827	41862	14131050	+	(CATA)n		Simple_repeat
AL591425.4	42276	42328	14131051	-	PB1	Alu	SINE
AL591425.4	42400	42421	14131052	+	AT_rich		Low_complexity
AL591425.4	42483	42567	14131053	-	B1F	Alu	SINE
AL591425.4	42675	42709	14131054	+	(TA)n		Simple_repeat
AL591425.4	42987	43089	14131055	-	RMER30	hAT-Charlie	DNA
AL591425.4	43090	43117	14131056	+	(TG)n
AL591425.4	43118	43178	14131055	-	RMER30	hAT-Charlie	DNA
AL591425.4	43221	43352	14131057	-	B1_Mur1	Alu	SINE
AL591425.4	43562	43701	14131058	+	B1_Mur3	Alu	SINE
AL591425.4	44562	44635	14131059	-	ID4_	ID	SINE
AL591425.4	45220	45412	14131060	-	B2_Mm2	B2	SINE
AL591425.4	45465	45497	14131061	+	(TC)n
AL591425.4	45498	45519	14131062	+	(TG)n
AL591425.4	45541	45792	14131063	-	B4A	B4	SINE
AL591425.4	46049	46130	14131064	-	ID2	ID	SINE
AL591425.4	46135	46172	14131065	+	(TTTTG)n
AL591425.4	46174	46249	14131066	-	ID_B1	B4	SINE
AL591425.4	46188	46254	14131067	-	B1F	Alu	SINE
AL591425.4	46303	46408	14131068	+	PB1D7	Alu	SINE
AL591425.4	46502	46787	14131069	+	B4A	B4	SINE
AL591425.4	46833	47011	14131070	+	RCHARR1	hAT-Charlie	DNA
AL591425.4	47012	47092	14131071	-	ID4_	ID	SINE
AL591425.4	47093	47336	14131070	+	RCHARR1	hAT-Charlie	DNA
AL591425.4	47345	47476	14131072	-	ID_B1	B4	SINE
AL591425.4	47475	47671	14131073	+	RCHARR1	hAT-Charlie	DNA
AL591425.4	47727	47875	14131074	+	B1_Mus1	Alu	SINE
AL591425.4	47939	48106	14131075	-	B3	B2	SINE
AL591425.4	48107	48185	14131076	+	B4A	B4	SINE
AL591425.4	48193	48274	14131077	+	ID4	ID	SINE
AL591425.4	48357	48527	14131078	+	B2_Mm2	B2	SINE
AL591425.4	48550	48697	14131079	+	L1MC5a		L1
AL591425.4	48698	48839	14131080	+	B1_Mur3	Alu	SINE
AL591425.4	48840	48953	14131079	+	L1MC5a		L1
AL591425.4	49395	49594	14131081	-	B3A	B2	SINE
AL591425.4	50310	50410	14131082	+	B1F	Alu	SINE
AL591425.4	51404	51520	14131083	+	C-rich
AL591425.4	53134	53169	14131084	+	(GA)n		Simple_repeat
AL591425.4	53418	53544	14131085	+	B1_Mus2	Alu	SINE
AL591425.4	54597	54710	14131086	+	RLTR22_Mur	ERVK	LTR
AL591425.4	55233	55254	14131087	+	(TTTTTA)n
AL591425.4	57249	57413	14131088	-	L2c		L2
AL591425.4	58122	58253	14131089	-	ID_B1	B4	SINE
AL591425.4	58961	59081	14131090	-	PB1D10	Alu	SINE
AL591425.4	59364	59718	14131091	+	MTE2b	ERVL-MaLR	LTR
AL591425.4	59796	59952	14131092	+	B1_Mur4	Alu	SINE
AL591425.4	60010	60095	14131093	+	B1_Mus2	Alu	SINE
AL591425.4	60133	60319	14131094	+	B3	B2	SINE
AL591425.4	60357	60499	14131095	+	B1_Mur1	Alu	SINE
AL591425.4	60526	60593	14131096	+	B3	B2	SINE
AL591425.4	60618	60730	14131097	+	B1_Mur4	Alu	SINE
AL591425.4	60748	60862	14131098	+	PB1D10	Alu	SINE
AL591425.4	61968	61990	14131099	+	(TTTG)n
AL591425.4	61994	62099	14131100	-	PB1D10	Alu	SINE
AL591425.4	62415	62569	14131101	+	RSINE1	B4	SINE
AL591425.4	62570	62589	14131102	+	B3A	B2	SINE
AL591425.4	62598	62668	14131103	+	MER53	hAT	DNA
AL591425.4	63714	63842	14131104	+	MIRb	MIR	SINE
AL591425.4	64913	64932	14131105	+	(CCCCG)n		Simple_repeat
AL591425.4	65264	65335	14131106	+	(TG)n
AL591425.4	65852	66000	14131107	+	B1_Mus1	Alu	SINE
AL591425.4	66966	67154	14131108	-	B2_Mm2	B2	SINE
AL591425.4	67157	67187	14131109	+	AT_rich		Low_complexity
AL591425.4	67190	67276	14131110	+	RSINE1	B4	SINE
AL591425.4	67277	67681	14131111	-	MTC	ERVL-MaLR	LTR
AL591425.4	67682	67774	14131110	+	RSINE1	B4	SINE
AL591425.4	67904	67985	14131112	+	PB1	Alu	SINE
AL591425.4	67958	68071	14131113	-	B3	B2	SINE
AL591425.4	68085	68230	14131114	-	B3A	B2	SINE
AL591425.4	68252	68348	14131115	-	PB1D9	Alu	SINE
AL591425.4	70356	70384	14131116	+	(CA)n		Simple_repeat
AL591425.4	70694	70805	14131117	+	PB1D10	Alu	SINE
AL591425.4	70820	70911	14131118	+	L1M4		L1
AL591425.4	70914	71009	14131119	+	PB1D10	Alu	SINE
AL591425.4	71057	71113	14131118	+	L1M4		L1
AL591425.4	71441	71529	14131120	+	LTR78B	ERV1	LTR
AL591425.4	71524	71651	14131121	+	ID_B1	B4	SINE
AL591425.4	71667	71814	14131122	+	RSINE1	B4	SINE
AL591425.4	71894	72009	14131123	+	RLTR25B	ERVK	LTR
AL591425.4	71913	72039	14131124	+	B1_Mur3	Alu	SINE
AL591425.4	72076	72139	14131125	+	(GA)n		Simple_repeat
AL591425.4	72232	72403	14131126	-	B4A	B4	SINE
AL591425.4	72436	72631	14131127	-	ORR1D2	ERVL-MaLR	LTR
AL591425.4	72665	72830	14131128	-	URR1B	hAT-Charlie	DNA
AL591425.4	72847	72939	14131127	-	ORR1D2	ERVL-MaLR	LTR
AL591425.4	73608	73732	14131129	+	B1F2	Alu	SINE
AL591425.4	73735	73770	14131130	+	A-rich
AL591425.4	73830	73968	14131131	-	B1_Mus1	Alu	SINE
AL591425.4	73970	74085	14131132	+	B1_Mur2	Alu	SINE
AL591425.4	74110	74301	14131133	+	B3	B2	SINE
AL591425.4	74346	74502	14131134	-	RSINE1	B4	SINE
AL591425.4	74636	74736	14131135	+	PB1D7	Alu	SINE
AL591425.4	74790	75134	14131136	+	RMER19B2	ERVK	LTR
AL591425.4	75161	75182	14131137	+	(T)n
AL591425.4	75205	75415	14131138	+	RMER5	ERV1	LTR
AL591425.4	1	59	16623649	N	DUST
AL591425.4	262	272	16623650	N	DUST
AL591425.4	461	479	16623651	N	DUST
AL591425.4	645	689	16623652	N	DUST
AL591425.4	734	831	16623653	N	DUST
AL591425.4	928	1029	16623654	N	DUST
AL591425.4	1654	1681	16623655	N	DUST
AL591425.4	2197	2240	16623656	N	DUST
AL591425.4	2512	2555	16623657	N	DUST
AL591425.4	2896	3067	16623658	N	DUST
AL591425.4	3236	3246	16623659	N	DUST
AL591425.4	4236	4271	16623660	N	DUST
AL591425.4	4338	4365	16623661	N	DUST
AL591425.4	4898	4945	16623662	N	DUST
AL591425.4	5293	5338	16623663	N	DUST
AL591425.4	7171	7219	16623664	N	DUST
AL591425.4	7460	7545	16623665	N	DUST
AL591425.4	7738	7762	16623666	N	DUST
AL591425.4	7803	7832	16623667	N	DUST
AL591425.4	7903	7981	16623668	N	DUST
AL591425.4	8255	8281	16623669	N	DUST
AL591425.4	8423	8443	16623670	N	DUST
AL591425.4	8539	8633	16623671	N	DUST
AL591425.4	8917	8945	16623672	N	DUST
AL591425.4	8964	9021	16623673	N	DUST
AL591425.4	9062	9072	16623674	N	DUST
AL591425.4	9493	9565	16623675	N	DUST
AL591425.4	9568	9593	16623676	N	DUST
AL591425.4	9816	9830	16623677	N	DUST
AL591425.4	9980	10051	16623678	N	DUST
AL591425.4	10310	10397	16623679	N	DUST
AL591425.4	10907	10931	16623680	N	DUST
AL591425.4	11256	11619	16623681	N	DUST
AL591425.4	12650	12695	16623682	N	DUST
AL591425.4	12957	13021	16623683	N	DUST
AL591425.4	13312	13326	16623684	N	DUST
AL591425.4	13677	13693	16623685	N	DUST
AL591425.4	13721	13733	16623686	N	DUST
AL591425.4	14003	14076	16623687	N	DUST
AL591425.4	14196	14226	16623688	N	DUST
AL591425.4	14374	14382	16623689	N	DUST
AL591425.4	14667	14682	16623690	N	DUST
AL591425.4	14846	14855	16623691	N	DUST
AL591425.4	14984	14997	16623692	N	DUST
AL591425.4	15612	15647	16623693	N	DUST
AL591425.4	16913	16919	16623694	N	DUST
AL591425.4	17414	17432	16623695	N	DUST
AL591425.4	18044	18081	16623696	N	DUST
AL591425.4	18144	18162	16623697	N	DUST
AL591425.4	18388	18416	16623698	N	DUST
AL591425.4	18649	18673	16623699	N	DUST
AL591425.4	18710	18716	16623700	N	DUST
AL591425.4	18758	18775	16623701	N	DUST
AL591425.4	19762	19818	16623702	N	DUST
AL591425.4	20149	20188	16623703	N	DUST
AL591425.4	20336	20411	16623704	N	DUST
AL591425.4	20463	20507	16623705	N	DUST
AL591425.4	20671	20727	16623706	N	DUST
AL591425.4	21182	21221	16623707	N	DUST
AL591425.4	21353	21400	16623708	N	DUST
AL591425.4	21539	21582	16623709	N	DUST
AL591425.4	22084	22090	16623710	N	DUST
AL591425.4	22118	22149	16623711	N	DUST
AL591425.4	22713	22808	16623712	N	DUST
AL591425.4	23329	23360	16623713	N	DUST
AL591425.4	23385	23396	16623714	N	DUST
AL591425.4	23790	23813	16623715	N	DUST
AL591425.4	25100	25153	16623716	N	DUST
AL591425.4	25180	25186	16623717	N	DUST
AL591425.4	25195	25201	16623718	N	DUST
AL591425.4	25302	25342	16623719	N	DUST
AL591425.4	25485	25526	16623720	N	DUST
AL591425.4	25929	25946	16623721	N	DUST
AL591425.4	26114	26126	16623722	N	DUST
AL591425.4	26149	26193	16623723	N	DUST
AL591425.4	26200	26209	16623724	N	DUST
AL591425.4	26546	26557	16623725	N	DUST
AL591425.4	26958	26964	16623726	N	DUST
AL591425.4	27063	27131	16623727	N	DUST
AL591425.4	27498	27529	16623728	N	DUST
AL591425.4	27628	27634	16623729	N	DUST
AL591425.4	29266	29366	16623730	N	DUST
AL591425.4	29375	29387	16623731	N	DUST
AL591425.4	30807	30854	16623732	N	DUST
AL591425.4	31049	31058	16623733	N	DUST
AL591425.4	31308	31315	16623734	N	DUST
AL591425.4	31468	31475	16623735	N	DUST
AL591425.4	32321	32363	16623736	N	DUST
AL591425.4	32474	32533	16623737	N	DUST
AL591425.4	32569	32669	16623738	N	DUST
AL591425.4	33069	33100	16623739	N	DUST
AL591425.4	34609	34629	16623740	N	DUST
AL591425.4	35294	35300	16623741	N	DUST
AL591425.4	35790	35832	16623742	N	DUST
AL591425.4	35980	36092	16623743	N	DUST
AL591425.4	36699	36705	16623744	N	DUST
AL591425.4	37635	37715	16623745	N	DUST
AL591425.4	37719	37725	16623746	N	DUST
AL591425.4	37735	37743	16623747	N	DUST
AL591425.4	37932	37947	16623748	N	DUST
AL591425.4	38060	38117	16623749	N	DUST
AL591425.4	38382	38391	16623750	N	DUST
AL591425.4	38471	38507	16623751	N	DUST
AL591425.4	39183	39220	16623752	N	DUST
AL591425.4	39376	39401	16623753	N	DUST
AL591425.4	39520	39545	16623754	N	DUST
AL591425.4	39613	39634	16623755	N	DUST
AL591425.4	39822	39830	16623756	N	DUST
AL591425.4	41776	41862	16623757	N	DUST
AL591425.4	42348	42355	16623758	N	DUST
AL591425.4	42398	42464	16623759	N	DUST
AL591425.4	42680	42709	16623760	N	DUST
AL591425.4	43090	43117	16623761	N	DUST
AL591425.4	43748	43754	16623762	N	DUST
AL591425.4	45220	45244	16623763	N	DUST
AL591425.4	45461	45519	16623764	N	DUST
AL591425.4	45763	45775	16623765	N	DUST
AL591425.4	46133	46172	16623766	N	DUST
AL591425.4	46400	46475	16623767	N	DUST
AL591425.4	47001	47018	16623768	N	DUST
AL591425.4	47345	47351	16623769	N	DUST
AL591425.4	47687	47694	16623770	N	DUST
AL591425.4	48499	48561	16623771	N	DUST
AL591425.4	48828	48839	16623772	N	DUST
AL591425.4	49338	49365	16623773	N	DUST
AL591425.4	49412	49449	16623774	N	DUST
AL591425.4	51078	51085	16623775	N	DUST
AL591425.4	51150	51163	16623776	N	DUST
AL591425.4	51446	51510	16623777	N	DUST
AL591425.4	53123	53169	16623778	N	DUST
AL591425.4	55040	55090	16623779	N	DUST
AL591425.4	55232	55256	16623780	N	DUST
AL591425.4	57616	57631	16623781	N	DUST
AL591425.4	59705	59711	16623782	N	DUST
AL591425.4	59940	59972	16623783	N	DUST
AL591425.4	60085	60092	16623784	N	DUST
AL591425.4	60488	60500	16623785	N	DUST
AL591425.4	60596	60610	16623786	N	DUST
AL591425.4	60852	60866	16623787	N	DUST
AL591425.4	61959	61996	16623788	N	DUST
AL591425.4	62227	62279	16623789	N	DUST
AL591425.4	62552	62570	16623790	N	DUST
AL591425.4	64677	64684	16623791	N	DUST
AL591425.4	64913	64933	16623792	N	DUST
AL591425.4	65264	65317	16623793	N	DUST
AL591425.4	65992	66000	16623794	N	DUST
AL591425.4	66966	66999	16623795	N	DUST
AL591425.4	68238	68261	16623796	N	DUST
AL591425.4	69114	69120	16623797	N	DUST
AL591425.4	70356	70384	16623798	N	DUST
AL591425.4	71020	71071	16623799	N	DUST
AL591425.4	71643	71661	16623800	N	DUST
AL591425.4	72076	72164	16623801	N	DUST
AL591425.4	73468	73493	16623802	N	DUST
AL591425.4	73721	73797	16623803	N	DUST
AL591425.4	73810	73839	16623804	N	DUST
AL591425.4	74074	74085	16623805	N	DUST
AL591425.4	74517	74523	16623806	N	DUST
AL591425.4	74620	74628	16623807	N	DUST
AL591425.4	74946	74955	16623808	N	DUST
AL591425.4	75161	75182	16623809	N	DUST
BX255926.10	7542	7674	14150869	-	B1_Mus1	Alu	SINE
BX255926.10	7673	7876	14150870	-	URR1A	hAT-Charlie	DNA
BX255926.10	7929	8085	14150871	-	RSINE1	B4	SINE
BX255926.10	8116	8305	14150872	-	B2_Mm1t	B2	SINE
BX255926.10	8399	8588	14150873	-	B2_Mm1t	B2	SINE
BX255926.10	8626	8729	14150874	+	MER5A	hAT-Charlie	DNA
BX255926.10	10504	10635	14150875	+	ID_B1	B4	SINE
BX255926.10	10749	10783	14150876	+	U2		snRNA
BX255926.10	12939	12961	14150877	-	ID_B1	B4	SINE
BX255926.10	12962	13070	14150878	-	PB1D9	Alu	SINE
BX255926.10	13156	13346	14150879	-	B2_Mm2	B2	SINE
BX255926.10	13404	13501	14150880	-	ID_B1	B4	SINE
BX255926.10	13515	13537	14150881	-	B4A	B4	SINE
BX255926.10	13538	13572	14150882	+	(TG)n
BX255926.10	13573	13773	14150881	-	B4A	B4	SINE
BX255926.10	13889	14021	14150883	-	B1_Mus1	Alu	SINE
BX255926.10	15217	15251	14150884	+	(CCCCG)n		Simple_repeat
BX255926.10	17395	17415	14150885	+	(TCC)n
BX255926.10	23113	23315	14150886	-	B3	B2	SINE
BX255926.10	23351	23461	14150887	-	RSINE1	B4	SINE
BX255926.10	23540	23688	14150888	-	B1_Mus1	Alu	SINE
BX255926.10	24821	24863	14150889	+	AT_rich		Low_complexity
BX255926.10	26036	26090	14150890	+	(TTTC)n
BX255926.10	26095	26240	14150891	-	B1_Mm	Alu	SINE
BX255926.10	26590	26738	14150892	+	PB1D11	Alu	SINE
BX255926.10	26892	26914	14150893	+	AT_rich		Low_complexity
BX255926.10	27417	27536	14150894	-	B1_Mus1	Alu	SINE
BX255926.10	28804	28948	14150895	+	B1_Mus2	Alu	SINE
BX255926.10	33376	33499	14150896	-	RSINE1	B4	SINE
BX255926.10	34043	34068	14150897	+	ID_B1	B4	SINE
BX255926.10	34069	34203	14150898	+	B1_Mur4	Alu	SINE
BX255926.10	34215	34275	14150899	+	ID4	ID	SINE
BX255926.10	34425	34598	14150900	+	URR1A	hAT-Charlie	DNA
BX255926.10	7351	7504	14150868	+	B1_Mur3	Alu	SINE
BX255926.10	7304	7333	14150867	+	(CACCAT)n		Simple_repeat
BX255926.10	7047	7293	14150866	+	ID_B1	B4	SINE
BX255926.10	7036	7130	14150865	+	MT2B	ERVL	LTR
BX255926.10	6994	7014	14150864	+	AT_rich		Low_complexity
BX255926.10	5519	5730	14150863	-	B3	B2	SINE
BX255926.10	5259	5440	14150862	+	B3	B2	SINE
BX255926.10	5142	5239	14150861	+	PB1D10	Alu	SINE
BX255926.10	4436	4497	14150860	+	L2b		L2
BX255926.10	4333	4355	14150859	+	(G)n		Simple_repeat
BX255926.10	4057	4332	14150858	-	MTD	ERVL-MaLR	LTR
BX255926.10	3995	4064	14150857	+	B1F2	Alu	SINE
BX255926.10	3315	3387	14150856	+	MIRb	MIR	SINE
BX255926.10	2093	2304	14150855	-	B4	B4	SINE
BX255926.10	1790	2092	14150854	+	RMER5	ERV1	LTR
BX255926.10	1746	1767	14150853	+	(T)n
BX255926.10	1375	1719	14150852	+	RMER19B2	ERVK	LTR
BX255926.10	1221	1321	14150851	+	PB1D7	Alu	SINE
BX255926.10	931	1087	14150850	-	RSINE1	B4	SINE
BX255926.10	695	886	14150849	+	B3	B2	SINE
BX255926.10	555	670	14150848	+	B1_Mur2	Alu	SINE
BX255926.10	415	553	14150847	-	B1_Mus1	Alu	SINE
BX255926.10	320	355	14150846	+	A-rich
BX255926.10	193	317	14150845	+	B1F2	Alu	SINE
BX255926.10	35184	35261	14150901	+	ID4	ID	SINE
BX255926.10	35264	35354	14150902	+	A-rich
BX255926.10	37651	37666	14150903	-	B1F	Alu	SINE
BX255926.10	37667	37728	14150904	-	ID_B1	B4	SINE
BX255926.10	37979	38111	14150905	+	ID_B1	B4	SINE
BX255926.10	38138	38239	14150906	+	PB1D9	Alu	SINE
BX255926.10	38240	38268	14150907	+	(TAAA)n		Simple_repeat
BX255926.10	38273	38478	14150908	+	B3	B2	SINE
BX255926.10	38691	38805	14150909	-	PB1D9	Alu	SINE
BX255926.10	38886	38914	14150910	+	(CAAA)n		Simple_repeat
BX255926.10	39168	39264	14150911	+	MIR3	MIR	SINE
BX255926.10	39289	39437	14150912	+	B1_Mus1	Alu	SINE
BX255926.10	39755	39896	14150913	+	ID_B1	B4	SINE
BX255926.10	39952	40116	14150914	+	L1M3		L1
BX255926.10	40416	40535	14150915	-	B1_Mm	Alu	SINE
BX255926.10	40551	40729	14150916	-	B4A	B4	SINE
BX255926.10	40789	40893	14150917	+	ID_B1	B4	SINE
BX255926.10	40917	41037	14150918	-	PB1	Alu	SINE
BX255926.10	41064	41222	14150919	+	RSINE1	B4	SINE
BX255926.10	41266	41397	14150920	+	B1F2	Alu	SINE
BX255926.10	41398	41427	14150921	+	(TAA)n		Simple_repeat
BX255926.10	41538	41676	14150922	+	ID_B1	B4	SINE
BX255926.10	41677	41816	14150923	+	B1_Mm	Alu	SINE
BX255926.10	41817	41898	14150922	+	ID_B1	B4	SINE
BX255926.10	42338	42446	14150924	+	B1_Mus2	Alu	SINE
BX255926.10	42447	42475	14150925	+	(TAAAA)n		Simple_repeat
BX255926.10	42497	42536	14150926	+	B2_Mm2	B2	SINE
BX255926.10	42537	42683	14150927	+	B1_Mus2	Alu	SINE
BX255926.10	42684	42865	14150926	+	B2_Mm2	B2	SINE
BX255926.10	43381	43504	14150917	+	ID_B1	B4	SINE
BX255926.10	43812	43895	14150928	+	PB1D10	Alu	SINE
BX255926.10	44176	44315	14150929	+	B1_Mur3	Alu	SINE
BX255926.10	44418	44479	14150930	+	GA-rich
BX255926.10	44485	44551	14150931	+	HAL1M8	L1	LINE
BX255926.10	44937	45046	14150932	+	RLTR48A	ERV1	LTR
BX255926.10	45059	45387	14150932	+	RLTR48A	ERV1	LTR
BX255926.10	45388	45506	14150933	+	RSINE1	B4	SINE
BX255926.10	45517	45703	14150934	+	B3	B2	SINE
BX255926.10	45764	46070	14150935	+	ORR1C2	ERVL-MaLR	LTR
BX255926.10	46084	46104	14150936	+	AT_rich		Low_complexity
BX255926.10	46123	46286	14150937	+	B1_Mur3	Alu	SINE
BX255926.10	46314	46504	14150938	+	B2_Mm2	B2	SINE
BX255926.10	46514	46743	14150939	+	ID_B1	B4	SINE
BX255926.10	46744	46913	14150940	+	RSINE1	B4	SINE
BX255926.10	46914	46935	14150939	+	B4	B4	SINE
BX255926.10	47083	47233	14150941	-	L1MB7		L1
BX255926.10	47357	47488	14150942	+	PB1D9	Alu	SINE
BX255926.10	47553	47713	14150943	-	B3	B2	SINE
BX255926.10	47792	47873	14150944	-	ID_B1	B4	SINE
BX255926.10	47902	47932	14150945	+	(CA)n		Simple_repeat
BX255926.10	48176	48252	14150946	+	ID_B1	B4	SINE
BX255926.10	48582	48652	14150947	+	ID4_	ID	SINE
BX255926.10	48847	48949	14150948	+	RLTR17B_Mm	ERVK	LTR
BX255926.10	48916	49013	14150949	-	B1_Mur1	Alu	SINE
BX255926.10	49160	49303	14150950	+	B1_Mus1	Alu	SINE
BX255926.10	49304	49358	14150951	+	A-rich
BX255926.10	49360	49504	14150952	+	B1_Mus1	Alu	SINE
BX255926.10	50303	50350	14150953	+	(GA)n		Simple_repeat
BX255926.10	50995	51063	14150954	+	ID_B1	B4	SINE
BX255926.10	51149	51276	14150955	+	B3A	B2	SINE
BX255926.10	54227	54370	14150956	-	B1_Mus1	Alu	SINE
BX255926.10	54373	54479	14150957	+	MER46C	TcMar-Tigger	DNA
BX255926.10	54560	54764	14150958	+	ID_B1	B4	SINE
BX255926.10	54767	54921	14150959	+	B1_Mus1	Alu	SINE
BX255926.10	55100	55273	14150960	+	B2_Mm2	B2	SINE
BX255926.10	55489	55637	14150961	+	RSINE1	B4	SINE
BX255926.10	55809	56018	14150962	+	B3	B2	SINE
BX255926.10	58057	58137	14150963	-	ID4	ID	SINE
BX255926.10	58288	58466	14150964	+	(CA)n		Simple_repeat
BX255926.10	58467	58531	14150965	-	RLTR20A4	ERVK	LTR
BX255926.10	59659	59792	14150966	-	RSINE1	B4	SINE
BX255926.10	59796	59845	14150967	-	B3	B2	SINE
BX255926.10	59846	59902	14150968	+	(TG)n
BX255926.10	59903	60048	14150967	-	B3	B2	SINE
BX255926.10	60138	60280	14150969	+	B1_Mus1	Alu	SINE
BX255926.10	60299	60442	14150970	+	B1_Mus1	Alu	SINE
BX255926.10	60548	60733	14150971	-	MIR	MIR	SINE
BX255926.10	60755	60901	14150972	-	B1_Mus2	Alu	SINE
BX255926.10	60941	61140	14150973	-	B3	B2	SINE
BX255926.10	61141	61215	14150974	-	PB1D10	Alu	SINE
BX255926.10	61314	61395	14150975	-	ID4	ID	SINE
BX255926.10	61475	61496	14150976	+	(G)n		Simple_repeat
BX255926.10	62070	62129	14150977	-	B1_Mus1	Alu	SINE
BX255926.10	62130	62175	14150978	-	B4	B4	SINE
BX255926.10	62296	62427	14150979	+	B1_Mus2	Alu	SINE
BX255926.10	62429	62584	14150980	+	(GA)n		Simple_repeat
BX255926.10	62585	62708	14150981	+	GA-rich
BX255926.10	63615	63805	14150982	+	B3	B2	SINE
BX255926.10	63811	63854	14150983	+	A-rich
BX255926.10	63902	64013	14150984	-	PB1D10	Alu	SINE
BX255926.10	64300	64427	14150985	-	B1_Mus2	Alu	SINE
BX255926.10	64499	64681	14150986	-	B3	B2	SINE
BX255926.10	64764	64871	14150987	+	RSINE1	B4	SINE
BX255926.10	64872	64927	14150988	+	(TC)n
BX255926.10	64928	64948	14150987	+	RSINE1	B4	SINE
BX255926.10	67012	67190	14151000	+	ID_B1	B4	SINE
BX255926.10	67568	67617	14151001	+	MER44D	TcMar-Tigger	DNA
BX255926.10	67618	67729	14151002	+	PB1D10	Alu	SINE
BX255926.10	67730	67782	14151001	+	MER44D	TcMar-Tigger	DNA
BX255926.10	67981	68000	14151003	+	(TAAAA)n		Simple_repeat
BX255926.10	68083	68166	14151004	-	B3	B2	SINE
BX255926.10	68167	68316	14151005	-	B1_Mur4	Alu	SINE
BX255926.10	68317	68449	14151004	-	B3	B2	SINE
BX255926.10	68465	68606	14151006	-	B1F	Alu	SINE
BX255926.10	68664	68800	14151007	+	B1_Mur2	Alu	SINE
BX255926.10	68805	68864	14151008	+	(TAGA)n		Simple_repeat
BX255926.10	68868	68980	14151009	+	RLTR51A_Mm	ERVK?	LTR
BX255926.10	68987	69089	14151010	-	PB1D10	Alu	SINE
BX255926.10	69155	69217	14151011	+	MIR3	MIR	SINE
BX255926.10	69214	69300	14151012	-	L2c		L2
BX255926.10	69767	69905	14151013	+	ID_B1	B4	SINE
BX255926.10	70120	70190	14151014	+	B1_Mur3	Alu	SINE
BX255926.10	70205	70387	14151015	-	B3	B2	SINE
BX255926.10	70469	70540	14151016	-	ID4	ID	SINE
BX255926.10	70626	70839	14151017	-	B3	B2	SINE
BX255926.10	71476	71490	14151018	+	ID		ID
BX255926.10	71491	71569	14151019	+	B1F2	Alu	SINE
BX255926.10	72001	72032	14151020	+	(T)n
BX255926.10	72033	72181	14151021	-	B1_Mur3	Alu	SINE
BX255926.10	72355	72572	14151022	+	B4A	B4	SINE
BX255926.10	72573	72618	14151023	+	T-rich
BX255926.10	72623	72769	14151024	-	B1_Mur4	Alu	SINE
BX255926.10	72789	72928	14151025	+	B1_Mur4	Alu	SINE
BX255926.10	73049	73125	14151026	-	MER5A	hAT-Charlie	DNA
BX255926.10	73126	73170	14151027	+	(CCG)n
BX255926.10	73171	73263	14151026	-	MER5A	hAT-Charlie	DNA
BX255926.10	73344	73468	14151028	-	MLT1J	ERVL-MaLR	LTR
BX255926.10	66799	66865	14150999	+	PB1	Alu	SINE
BX255926.10	66617	66710	14150998	-	RSINE1	B4	SINE
BX255926.10	66470	66616	14150997	-	B1_Mus2	Alu	SINE
BX255926.10	66214	66234	14150996	+	AT_rich		Low_complexity
BX255926.10	66143	66170	14150995	+	(TTG)n
BX255926.10	65794	65896	14150994	-	MIR	MIR	SINE
BX255926.10	65558	65587	14150993	+	(CA)n		Simple_repeat
BX255926.10	65426	65557	14150992	-	B3	B2	SINE
BX255926.10	65238	65406	14150991	+	B2_Mm1t	B2	SINE
BX255926.10	65073	65227	14150990	+	B2_Mm1t	B2	SINE
BX255926.10	64970	65036	14150989	-	RLTR20A4	ERVK	LTR
BX255926.10	73505	73602	14151029	+	ORR1F	ERVL-MaLR	LTR
BX255926.10	73622	73786	14151030	+	RSINE1	B4	SINE
BX255926.10	73798	73842	14151031	+	(CA)n		Simple_repeat
BX255926.10	53	78	16795062	N	DUST
BX255926.10	306	382	16795063	N	DUST
BX255926.10	395	424	16795064	N	DUST
BX255926.10	659	670	16795065	N	DUST
BX255926.10	1102	1108	16795066	N	DUST
BX255926.10	1205	1213	16795067	N	DUST
BX255926.10	1531	1540	16795068	N	DUST
BX255926.10	1746	1767	16795069	N	DUST
BX255926.10	4333	4355	16795070	N	DUST
BX255926.10	6500	6516	16795071	N	DUST
BX255926.10	7000	7014	16795072	N	DUST
BX255926.10	7308	7324	16795073	N	DUST
BX255926.10	7514	7551	16795074	N	DUST
BX255926.10	7887	7906	16795075	N	DUST
BX255926.10	8109	8148	16795076	N	DUST
BX255926.10	8399	8413	16795077	N	DUST
BX255926.10	10623	10635	16795078	N	DUST
BX255926.10	13154	13163	16795079	N	DUST
BX255926.10	13538	13572	16795080	N	DUST
BX255926.10	13863	13900	16795081	N	DUST
BX255926.10	14353	14380	16795082	N	DUST
BX255926.10	15217	15251	16795083	N	DUST
BX255926.10	17389	17417	16795084	N	DUST
BX255926.10	18115	18144	16795085	N	DUST
BX255926.10	21448	21466	16795086	N	DUST
BX255926.10	21730	21736	16795087	N	DUST
BX255926.10	22010	22022	16795088	N	DUST
BX255926.10	22888	22894	16795089	N	DUST
BX255926.10	23527	23549	16795090	N	DUST
BX255926.10	26019	26099	16795091	N	DUST
BX255926.10	26892	26913	16795092	N	DUST
BX255926.10	27417	27427	16795093	N	DUST
BX255926.10	28938	28978	16795094	N	DUST
BX255926.10	29227	29233	16795095	N	DUST
BX255926.10	29412	29418	16795096	N	DUST
BX255926.10	34187	34211	16795097	N	DUST
BX255926.10	35264	35354	16795098	N	DUST
BX255926.10	38114	38129	16795099	N	DUST
BX255926.10	38693	38699	16795100	N	DUST
BX255926.10	38884	38940	16795101	N	DUST
BX255926.10	39426	39448	16795102	N	DUST
BX255926.10	41398	41452	16795103	N	DUST
BX255926.10	41806	41834	16795104	N	DUST
BX255926.10	41898	41910	16795105	N	DUST
BX255926.10	42445	42492	16795106	N	DUST
BX255926.10	42673	42706	16795107	N	DUST
BX255926.10	42859	42865	16795108	N	DUST
BX255926.10	43029	43065	16795109	N	DUST
BX255926.10	43502	43509	16795110	N	DUST
BX255926.10	44397	44486	16795111	N	DUST
BX255926.10	44697	44718	16795112	N	DUST
BX255926.10	44755	44771	16795113	N	DUST
BX255926.10	45282	45308	16795114	N	DUST
BX255926.10	46276	46307	16795115	N	DUST
BX255926.10	46681	46742	16795116	N	DUST
BX255926.10	46899	46955	16795117	N	DUST
BX255926.10	47902	47932	16795118	N	DUST
BX255926.10	48413	48419	16795119	N	DUST
BX255926.10	48866	48909	16795120	N	DUST
BX255926.10	49025	49036	16795121	N	DUST
BX255926.10	49292	49361	16795122	N	DUST
BX255926.10	49505	49517	16795123	N	DUST
BX255926.10	49544	49550	16795124	N	DUST
BX255926.10	50286	50295	16795125	N	DUST
BX255926.10	50303	50335	16795126	N	DUST
BX255926.10	50340	50348	16795127	N	DUST
BX255926.10	50350	50365	16795128	N	DUST
BX255926.10	51316	51332	16795129	N	DUST
BX255926.10	51655	51668	16795130	N	DUST
BX255926.10	52146	52156	16795131	N	DUST
BX255926.10	54753	54759	16795132	N	DUST
BX255926.10	54910	54943	16795133	N	DUST
BX255926.10	58288	58530	16795134	N	DUST
BX255926.10	59795	59810	16795135	N	DUST
BX255926.10	59846	59902	16795136	N	DUST
BX255926.10	60721	60765	16795137	N	DUST
BX255926.10	61141	61147	16795138	N	DUST
BX255926.10	61196	61263	16795139	N	DUST
BX255926.10	61475	61496	16795140	N	DUST
BX255926.10	61978	61984	16795141	N	DUST
BX255926.10	62046	62060	16795142	N	DUST
BX255926.10	62273	62290	16795143	N	DUST
BX255926.10	62428	62737	16795144	N	DUST
BX255926.10	63811	63842	16795145	N	DUST
BX255926.10	64280	64293	16795146	N	DUST
BX255926.10	64476	64486	16795147	N	DUST
BX255926.10	64681	64709	16795148	N	DUST
BX255926.10	64872	65029	16795149	N	DUST
BX255926.10	65213	65231	16795150	N	DUST
BX255926.10	65373	65404	16795151	N	DUST
BX255926.10	65558	65587	16795152	N	DUST
BX255926.10	66127	66173	16795153	N	DUST
BX255926.10	66335	66414	16795154	N	DUST
BX255926.10	66446	66480	16795155	N	DUST
BX255926.10	67981	68002	16795156	N	DUST
BX255926.10	68083	68097	16795157	N	DUST
BX255926.10	68800	68873	16795158	N	DUST
BX255926.10	68899	68977	16795159	N	DUST
BX255926.10	70186	70199	16795160	N	DUST
BX255926.10	70860	70871	16795161	N	DUST
BX255926.10	70954	70966	16795162	N	DUST
BX255926.10	71982	72000	16795163	N	DUST
BX255926.10	72008	72044	16795164	N	DUST
BX255926.10	72569	72649	16795165	N	DUST
BX255926.10	73126	73170	16795166	N	DUST
BX255926.10	73802	73842	16795167	N	DUST

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Curator Links

Alignment for AL591425.4 and BX255926.10

Alignment Summary

Alignment 1 of 1